Wall clock time and date at job start Tue Mar 31 2020 16:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47150 * 185.83200 * 3 2 1 5 5 H 1.09007 * 109.46915 * 55.00203 * 4 3 2 6 6 C 1.52997 * 109.47085 * 174.99839 * 4 3 2 7 7 O 1.45198 * 109.47524 * 295.00131 * 4 3 2 8 8 C 1.34838 * 117.00115 * 149.99740 * 7 4 3 9 9 O 1.21594 * 120.00230 * 0.02562 * 8 7 4 10 10 C 1.46738 * 119.99864 * 179.97438 * 8 7 4 11 11 C 1.36476 * 126.78261 * 0.03146 * 10 8 7 12 12 N 1.35403 * 109.76347 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.77238 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02426 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.37979 * 110.44843 * 0.26347 * 12 11 10 24 24 C 1.39127 * 133.17490 * 180.42656 * 23 12 11 25 25 C 1.37772 * 119.92747 * 179.55921 * 24 23 12 26 26 C 1.38742 * 120.63468 * 359.76175 * 25 24 23 27 27 C 1.37768 * 120.29583 * 359.97438 * 26 25 24 28 28 C 1.39250 * 119.67251 * 359.97438 * 27 26 25 29 29 H 4.44645 * 5.63442 * 180.02562 * 4 1 2 30 30 H 1.09006 * 109.47074 * 65.83390 * 3 2 1 31 31 H 1.09000 * 109.47144 * 305.83910 * 3 2 1 32 32 H 1.09004 * 109.47316 * 180.02562 * 6 4 3 33 33 H 1.08998 * 109.47702 * 300.00271 * 6 4 3 34 34 H 1.09007 * 109.46947 * 60.00383 * 6 4 3 35 35 H 1.08001 * 125.11454 * 359.97438 * 11 10 8 36 36 H 1.09004 * 109.46794 * 145.02525 * 13 12 11 37 37 H 1.09000 * 109.47559 * 25.03001 * 13 12 11 38 38 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 39 39 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.08000 * 120.03165 * 359.32067 * 24 23 12 42 42 H 1.07995 * 119.68080 * 179.74031 * 25 24 23 43 43 H 1.08000 * 119.85019 * 179.97438 * 26 25 24 44 44 H 1.08006 * 120.16103 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4359 0.1466 5 1 2.7205 1.8864 1.0389 6 6 4.6801 1.4256 0.2719 7 8 2.7709 2.2077 -1.0217 8 6 2.5602 3.5272 -0.8414 9 8 2.6948 4.0192 0.2623 10 6 2.1697 4.3697 -1.9776 11 6 1.9809 3.9660 -3.2675 12 7 1.6253 5.0258 -4.0316 13 6 1.3431 4.9631 -5.4677 14 6 2.6061 5.3243 -6.2520 15 6 2.3155 5.2604 -7.7294 16 1 1.3285 4.9897 -8.0744 17 6 3.3080 5.5537 -8.6405 18 7 4.5097 5.8837 -8.2203 19 14 2.9456 5.4820 -10.4716 20 1 2.4717 6.8109 -10.9349 21 1 4.1822 5.1136 -11.2068 22 1 1.8951 4.4645 -10.7289 23 6 1.5726 6.1741 -3.2685 24 6 1.2591 7.4977 -3.5608 25 6 1.2852 8.4468 -2.5625 26 6 1.6173 8.0960 -1.2619 27 6 1.9255 6.7895 -0.9517 28 6 1.9020 5.8198 -1.9508 29 1 -1.0502 -0.0004 0.0002 30 1 3.0095 -0.4199 -0.9377 31 1 3.0096 -0.6009 0.8331 32 1 5.0430 2.4481 0.3767 33 1 4.9688 0.8463 1.1488 34 1 5.1150 0.9751 -0.6204 35 1 2.0975 2.9535 -3.6250 36 1 0.5489 5.6683 -5.7130 37 1 1.0272 3.9540 -5.7323 38 1 3.4002 4.6190 -6.0067 39 1 2.9219 6.3334 -5.9876 40 1 5.2080 6.0897 -8.8614 41 1 0.9992 7.7815 -4.5699 42 1 1.0452 9.4739 -2.7947 43 1 1.6343 8.8504 -0.4893 44 1 2.1833 6.5187 0.0616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516783709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:30 Heat of formation + Delta-G solvation = 10.327516 kcal Electronic energy + Delta-G solvation = -26368.366366 eV Core-core repulsion = 22638.291298 eV Total energy + Delta-G solvation = -3730.075069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 5.59 seconds Orbital eigenvalues (eV) -41.28724 -39.96844 -36.94231 -36.74407 -34.50360 -34.08820 -32.46404 -31.88661 -30.47947 -28.95472 -28.67798 -27.60446 -25.41750 -23.64528 -22.61283 -21.87416 -21.44607 -20.36983 -19.75901 -18.41134 -17.65028 -16.97070 -16.45470 -16.09962 -15.79081 -15.29553 -15.12571 -14.85536 -14.53499 -14.27080 -14.08109 -13.83499 -13.63347 -13.42245 -13.01914 -12.92933 -12.60298 -12.48134 -12.35882 -12.21206 -11.84422 -11.48502 -11.37659 -11.24038 -11.09813 -10.76296 -10.73215 -10.68005 -10.39420 -10.30482 -10.24904 -10.08015 -9.95039 -9.46149 -9.28151 -8.56577 -7.99820 -7.43751 -6.20247 -4.26810 1.19922 1.77188 2.16753 2.60827 2.70491 2.82478 3.15189 3.20384 3.27992 3.30218 3.45630 4.15320 4.19944 4.29751 4.67525 4.87569 4.88865 4.93275 4.96334 4.97797 5.15968 5.25541 5.29808 5.36171 5.45360 5.45993 5.64682 5.69484 5.74683 5.82247 5.85088 5.93842 5.96473 5.98604 6.01867 6.29748 6.34056 6.62740 6.67331 6.82918 6.89621 6.98750 7.29574 7.33866 7.49590 7.49848 7.50750 7.76394 8.08762 8.12061 8.78794 9.39262 10.90548 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010194 B = 0.003346 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.008620 B = 8365.190517 C =10045.075908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.188 4.188 3 C -0.008 4.008 4 C 0.092 3.908 5 H 0.088 0.912 6 C -0.170 4.170 7 O -0.351 6.351 8 C 0.547 3.453 9 O -0.524 6.524 10 C -0.252 4.252 11 C 0.157 3.843 12 N -0.449 5.449 13 C 0.100 3.900 14 C 0.011 3.989 15 C -0.532 4.532 16 H 0.060 0.940 17 C 0.063 3.937 18 N -0.887 5.887 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.091 3.909 24 C -0.109 4.109 25 C -0.111 4.111 26 C -0.141 4.141 27 C -0.078 4.078 28 C -0.058 4.058 29 H 0.216 0.784 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.181 0.819 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.024 0.976 39 H 0.026 0.974 40 H 0.264 0.736 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.066 -6.843 15.621 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.188 4.188 3 C -0.045 4.045 4 C 0.037 3.963 5 H 0.106 0.894 6 C -0.228 4.228 7 O -0.269 6.269 8 C 0.395 3.605 9 O -0.415 6.415 10 C -0.261 4.261 11 C 0.020 3.980 12 N -0.125 5.125 13 C -0.019 4.019 14 C -0.026 4.026 15 C -0.570 4.570 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.525 5.525 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.013 4.013 24 C -0.129 4.129 25 C -0.130 4.130 26 C -0.160 4.160 27 C -0.096 4.096 28 C -0.062 4.062 29 H 0.233 0.767 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.198 0.802 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.910 -6.666 15.530 17.599 hybrid contribution -0.164 -0.064 -1.074 1.088 sum -5.074 -6.730 14.456 16.734 Atomic orbital electron populations 1.24892 0.95974 1.00039 1.01026 1.22884 0.94389 1.01003 1.00553 1.18892 0.85471 0.95440 1.04655 1.22574 0.95470 0.89825 0.88422 0.89444 1.22212 0.93865 1.03686 1.03002 1.86640 1.80035 1.21122 1.39059 1.19954 0.72946 0.80092 0.87558 1.90772 1.50401 1.73990 1.26295 1.18810 1.23202 0.92299 0.91754 1.22306 0.93017 0.93153 0.89530 1.44493 1.52794 1.05422 1.09835 1.22524 1.02263 1.03230 0.73927 1.19466 0.90715 0.98076 0.94364 1.20973 0.97423 1.48408 0.90226 0.92225 1.25001 0.94924 0.94716 0.99382 1.69969 1.02289 1.45501 1.34733 0.86509 0.77900 0.78504 0.84619 1.20474 1.21040 1.19710 1.18257 1.04421 0.88739 0.89924 1.20169 1.03080 0.89477 1.00139 1.20766 1.01052 0.98614 0.92562 1.20889 1.02804 0.95786 0.96529 1.20535 0.98964 0.91601 0.98525 1.18623 1.03486 0.91269 0.92794 0.76689 0.88229 0.87588 0.91358 0.90699 0.91148 0.80191 0.90003 0.89640 0.95744 0.95613 0.92613 0.85638 0.85841 0.86175 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 19.25 29.55 0.57 -1.58 16 2 C -0.19 -2.12 13.10 -37.12 -0.49 -2.61 16 3 C -0.01 -0.07 5.43 -29.52 -0.16 -0.23 16 4 C 0.09 1.04 2.54 -26.74 -0.07 0.97 16 5 H 0.09 1.09 7.16 -51.93 -0.37 0.71 16 6 C -0.17 -1.60 9.55 37.16 0.35 -1.24 16 7 O -0.35 -5.04 9.46 -40.87 -0.39 -5.42 16 8 C 0.55 9.18 7.91 34.16 0.27 9.45 16 9 O -0.52 -9.58 15.42 -19.34 -0.30 -9.88 16 10 C -0.25 -4.38 6.27 -103.33 -0.65 -5.03 16 11 C 0.16 2.57 11.04 -16.61 -0.18 2.39 16 12 N -0.45 -7.98 2.74 -114.21 -0.31 -8.30 16 13 C 0.10 1.84 5.89 -4.05 -0.02 1.82 16 14 C 0.01 0.27 5.30 -27.88 -0.15 0.12 16 15 C -0.53 -13.81 9.11 -34.44 -0.31 -14.13 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 19 Si 0.90 20.46 29.54 -169.99 -5.02 15.43 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 C 0.09 1.65 6.79 -83.96 -0.57 1.08 16 24 C -0.11 -1.80 9.97 -39.42 -0.39 -2.19 16 25 C -0.11 -1.59 10.01 -39.57 -0.40 -1.99 16 26 C -0.14 -2.01 10.03 -39.57 -0.40 -2.41 16 27 C -0.08 -1.27 9.85 -39.38 -0.39 -1.66 16 28 C -0.06 -1.05 6.27 -104.95 -0.66 -1.71 16 29 H 0.22 1.59 7.80 -54.08 -0.42 1.17 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.18 2.43 8.06 -52.49 -0.42 2.01 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 42 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.13 2.02 7.45 -52.48 -0.39 1.62 16 LS Contribution 389.46 15.07 5.87 5.87 Total: -1.00 -32.03 389.46 -9.37 -41.40 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.22 Total: 3.00 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -3.74 Total: -17.34 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.42 Total: -33.06 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.68 Total: -15.30 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.03 -9.37 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516783709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.727 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.59 seconds