Wall clock time and date at job start Tue Mar 31 2020 16:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46940 * 2 1 4 4 O 1.42901 * 109.47656 * 120.00163 * 2 1 3 5 5 C 1.35898 * 116.99780 * 88.80217 * 4 2 1 6 6 C 1.38816 * 120.02097 * 354.75832 * 5 4 2 7 7 C 1.38173 * 120.08231 * 179.73698 * 6 5 4 8 8 C 1.38153 * 120.12961 * 0.51010 * 7 6 5 9 9 C 1.38904 * 120.04199 * 359.76583 * 8 7 6 10 10 N 1.39844 * 120.04696 * 180.02562 * 9 8 7 11 11 C 1.34773 * 119.99989 * 215.64146 * 10 9 8 12 12 O 1.21562 * 120.00207 * 354.82064 * 11 10 9 13 13 C 1.47854 * 120.00249 * 174.82177 * 11 10 9 14 14 C 1.39933 * 120.02330 * 359.72197 * 13 11 10 15 15 C 1.38325 * 120.35474 * 179.69274 * 14 13 11 16 16 C 1.37751 * 120.41222 * 0.61252 * 15 14 13 17 17 C 1.40756 * 120.04443 * 359.67133 * 16 15 14 18 18 C 1.41435 * 120.17753 * 180.02562 * 17 16 15 19 19 H 1.08009 * 120.00149 * 325.16681 * 18 17 16 20 20 C 1.39933 * 120.00275 * 145.16907 * 18 17 16 21 21 N 1.30829 * 119.99553 * 358.09577 * 20 18 17 22 22 Si 1.86794 * 120.00427 * 178.10052 * 20 18 17 23 23 H 1.48502 * 109.46874 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47172 * 119.99895 * 22 20 18 25 25 H 1.48494 * 109.47395 * 240.00108 * 22 20 18 26 26 C 1.39006 * 120.02867 * 180.02562 * 13 11 10 27 27 C 1.38582 * 120.01630 * 175.02173 * 5 4 2 28 28 H 1.09007 * 109.46726 * 299.99618 * 1 2 3 29 29 H 1.09001 * 109.47627 * 59.99666 * 1 2 3 30 30 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47194 * 240.00621 * 2 1 3 32 32 H 1.09006 * 109.46654 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47506 * 299.99843 * 3 2 1 34 34 H 1.08998 * 109.47074 * 60.00790 * 3 2 1 35 35 H 1.07992 * 119.95514 * 359.97105 * 6 5 4 36 36 H 1.08007 * 119.92975 * 180.23038 * 7 6 5 37 37 H 1.08009 * 119.97867 * 179.74155 * 8 7 6 38 38 H 0.96995 * 120.00179 * 35.64245 * 10 9 8 39 39 H 1.07997 * 119.82293 * 359.97438 * 14 13 11 40 40 H 1.07997 * 119.79247 * 180.28262 * 15 14 13 41 41 H 1.08009 * 119.97851 * 179.69911 * 16 15 14 42 42 H 0.97002 * 120.00146 * 179.97438 * 21 20 18 43 43 H 1.07999 * 120.20352 * 359.97017 * 26 13 11 44 44 H 1.07991 * 120.06259 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1882 -2.0171 1.0724 6 6 1.8114 -2.6896 -0.0821 7 6 2.0007 -4.0547 -0.1815 8 6 2.5557 -4.7563 0.8713 9 6 2.9294 -4.0896 2.0311 10 7 3.4917 -4.7996 3.0967 11 6 3.2165 -4.4400 4.3660 12 8 2.5567 -3.4429 4.5858 13 6 3.7170 -5.2581 5.4913 14 6 4.4716 -6.4091 5.2388 15 6 4.9487 -7.1760 6.2865 16 6 4.6760 -6.8229 7.5898 17 6 3.9136 -5.6717 7.8633 18 6 3.6324 -5.3062 9.2003 19 1 3.4706 -6.0703 9.9464 20 6 3.5639 -3.9548 9.5567 21 7 3.7966 -3.0297 8.6613 22 14 3.1403 -3.4715 11.3106 23 1 2.9245 -4.6958 12.1229 24 1 4.2575 -2.6838 11.8906 25 1 1.9027 -2.6509 11.3128 26 6 3.4330 -4.8879 6.8007 27 6 2.7450 -2.7173 2.1308 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.3732 -2.1445 -0.9049 36 1 1.7100 -4.5748 -1.0823 37 1 2.6987 -5.8240 0.7926 38 1 4.0799 -5.5509 2.9222 39 1 4.6866 -6.6977 4.2206 40 1 5.5340 -8.0601 6.0813 41 1 5.0479 -7.4295 8.4024 42 1 3.7487 -2.0928 8.9081 43 1 2.8472 -4.0028 7.0002 44 1 3.0352 -2.1964 3.0311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522330761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:32 Heat of formation + Delta-G solvation = -32.130033 kcal Electronic energy + Delta-G solvation = -26208.962685 eV Core-core repulsion = 22477.046519 eV Total energy + Delta-G solvation = -3731.916166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.51617 -39.50147 -37.72049 -36.85128 -34.31842 -33.63828 -33.28205 -30.70565 -29.77629 -29.50655 -28.86013 -27.45287 -25.36003 -23.83624 -22.78232 -22.30981 -21.07037 -20.53499 -19.55984 -18.55067 -17.76135 -16.42441 -16.18473 -15.78704 -15.63443 -15.40496 -15.07388 -14.73676 -14.57199 -14.08117 -13.68987 -13.62215 -13.38659 -13.18886 -12.88310 -12.72727 -12.61879 -12.56947 -12.46574 -12.06491 -11.71705 -11.67104 -11.47167 -11.17736 -11.14704 -11.01774 -10.76283 -10.72923 -10.50966 -10.05455 -9.91721 -9.74319 -9.31885 -9.09152 -8.25519 -7.94572 -7.67631 -7.47231 -6.70505 -4.47698 1.35925 1.54991 2.11908 2.77195 3.07036 3.09298 3.10287 3.14335 3.55256 3.65087 3.94281 3.99041 4.55543 4.65819 4.69995 4.81906 4.91772 5.09683 5.22591 5.30030 5.34675 5.45143 5.49666 5.51412 5.53655 5.59009 5.66329 5.88156 5.95131 5.96466 6.07534 6.16665 6.37765 6.38656 6.52954 6.56899 6.64665 6.89032 6.95215 7.09166 7.21028 7.31139 7.54481 7.60203 7.64997 7.81728 7.97828 8.13490 8.46680 8.72073 8.78436 8.82929 10.23814 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.002959 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.453407 B = 9461.588329 C =11189.201978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.075 3.925 3 C -0.150 4.150 4 O -0.307 6.307 5 C 0.149 3.851 6 C -0.236 4.236 7 C -0.064 4.064 8 C -0.190 4.190 9 C 0.199 3.801 10 N -0.678 5.678 11 C 0.563 3.437 12 O -0.518 6.518 13 C -0.135 4.135 14 C -0.205 4.205 15 C -0.104 4.104 16 C -0.196 4.196 17 C 0.097 3.903 18 C -0.465 4.465 19 H 0.080 0.920 20 C 0.069 3.931 21 N -0.801 5.801 22 Si 0.916 3.084 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.273 1.273 26 C -0.074 4.074 27 C -0.158 4.158 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.412 0.588 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.282 0.718 43 H 0.138 0.862 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 2.606 -17.521 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.019 3.981 3 C -0.207 4.207 4 O -0.221 6.221 5 C 0.103 3.897 6 C -0.256 4.256 7 C -0.083 4.083 8 C -0.211 4.211 9 C 0.103 3.897 10 N -0.324 5.324 11 C 0.356 3.644 12 O -0.394 6.394 13 C -0.139 4.139 14 C -0.225 4.225 15 C -0.123 4.123 16 C -0.216 4.216 17 C 0.094 3.906 18 C -0.495 4.495 19 H 0.098 0.902 20 C -0.147 4.147 21 N -0.427 5.427 22 Si 0.741 3.259 23 H -0.185 1.185 24 H -0.199 1.199 25 H -0.198 1.198 26 C -0.094 4.094 27 C -0.179 4.179 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.249 0.751 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.093 0.907 43 H 0.156 0.844 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.061 3.692 -17.122 17.780 hybrid contribution 0.122 -0.191 0.405 0.464 sum -2.938 3.501 -16.717 17.330 Atomic orbital electron populations 1.22348 0.95081 1.03151 1.02981 1.22435 0.94360 0.93616 0.87702 1.21875 1.02148 0.93753 1.02950 1.86171 1.80886 1.17476 1.37546 1.18763 0.94608 0.82697 0.93668 1.21139 1.10000 0.95799 0.98639 1.20610 0.96658 0.93226 0.97757 1.20812 1.05970 0.99864 0.94415 1.17468 0.94435 0.90053 0.87734 1.43643 1.49469 1.34584 1.04744 1.19040 0.78609 0.84637 0.82154 1.90731 1.38513 1.25857 1.84304 1.19409 1.04569 0.97128 0.92752 1.20415 1.07143 0.98062 0.96902 1.20469 1.00155 0.98429 0.93207 1.21281 1.03618 1.01730 0.94990 1.17648 0.88959 0.90467 0.93504 1.19564 1.43265 0.92211 0.94463 0.90157 1.25919 0.92674 0.96413 0.99739 1.69730 1.35996 1.02006 1.34979 0.86132 0.78795 0.79308 0.81708 1.18534 1.19930 1.19774 1.21776 0.98149 1.00452 0.89025 1.20567 1.05211 0.92438 0.99698 0.91341 0.91212 0.91797 0.90800 0.91662 0.90720 0.91362 0.85654 0.85753 0.85706 0.75089 0.89037 0.88605 0.88312 0.90667 0.84424 0.83332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.28 37.15 0.34 -1.27 16 2 C 0.08 0.77 2.83 -26.73 -0.08 0.70 16 3 C -0.15 -1.27 9.56 37.16 0.36 -0.91 16 4 O -0.31 -4.54 9.78 -19.42 -0.19 -4.73 16 5 C 0.15 2.29 6.63 -39.24 -0.26 2.02 16 6 C -0.24 -2.94 8.45 -39.39 -0.33 -3.27 16 7 C -0.06 -0.74 10.03 -39.64 -0.40 -1.14 16 8 C -0.19 -2.50 9.96 -39.37 -0.39 -2.89 16 9 C 0.20 3.27 6.29 -83.74 -0.53 2.75 16 10 N -0.68 -11.64 5.27 -10.73 -0.06 -11.69 16 11 C 0.56 12.26 7.62 -12.33 -0.09 12.17 16 12 O -0.52 -12.88 13.79 5.31 0.07 -12.81 16 13 C -0.14 -3.12 5.87 -105.04 -0.62 -3.74 16 14 C -0.21 -4.15 9.54 -38.91 -0.37 -4.52 16 15 C -0.10 -2.14 10.01 -39.73 -0.40 -2.54 16 16 C -0.20 -4.54 9.78 -38.81 -0.38 -4.92 16 17 C 0.10 2.52 5.51 -106.87 -0.59 1.93 16 18 C -0.46 -12.14 9.04 -37.73 -0.34 -12.48 16 19 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 20 C 0.07 1.76 5.36 -17.34 -0.09 1.66 16 21 N -0.80 -21.34 10.84 55.55 0.60 -20.74 16 22 Si 0.92 18.99 29.56 -169.99 -5.02 13.96 16 23 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.07 -1.94 8.17 -38.44 -0.31 -2.25 16 27 C -0.16 -2.83 8.63 -39.24 -0.34 -3.17 16 28 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.62 7.37 -51.93 -0.38 0.24 16 31 H 0.07 0.66 6.05 -51.93 -0.31 0.35 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.13 1.23 5.58 -52.49 -0.29 0.94 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 38 H 0.41 5.82 6.86 -40.82 -0.28 5.54 16 39 H 0.09 1.49 6.40 -52.49 -0.34 1.15 16 40 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.10 2.12 8.06 -52.48 -0.42 1.69 16 42 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 43 H 0.14 3.95 5.96 -52.49 -0.31 3.64 16 44 H 0.15 3.09 6.25 -52.49 -0.33 2.77 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -30.26 366.68 -9.49 -39.74 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -5.60 Total: 12.63 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -4.82 Total: -21.89 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.55 Total: -32.44 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.12 Total: -17.54 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.26 -9.49 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522330761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.612 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds