Wall clock time and date at job start Tue Mar 31 2020 16:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46940 * 2 1 4 4 O 1.42901 * 109.47656 * 120.00163 * 2 1 3 5 5 C 1.35898 * 116.99780 * 88.80217 * 4 2 1 6 6 C 1.38816 * 120.02097 * 354.75832 * 5 4 2 7 7 C 1.38173 * 120.08231 * 179.73698 * 6 5 4 8 8 C 1.38153 * 120.12961 * 0.51010 * 7 6 5 9 9 C 1.38904 * 120.04199 * 359.76583 * 8 7 6 10 10 N 1.39844 * 120.04696 * 180.02562 * 9 8 7 11 11 C 1.34773 * 119.99989 * 215.64146 * 10 9 8 12 12 O 1.21562 * 120.00207 * 354.82064 * 11 10 9 13 13 C 1.47854 * 120.00249 * 174.82177 * 11 10 9 14 14 C 1.39933 * 120.02330 * 359.72197 * 13 11 10 15 15 C 1.38325 * 120.35474 * 179.69274 * 14 13 11 16 16 C 1.37751 * 120.41222 * 0.61252 * 15 14 13 17 17 C 1.40756 * 120.04443 * 359.67133 * 16 15 14 18 18 C 1.41435 * 120.17753 * 180.02562 * 17 16 15 19 19 H 1.08009 * 120.00149 * 325.16681 * 18 17 16 20 20 C 1.39933 * 120.00275 * 145.16907 * 18 17 16 21 21 N 1.30829 * 119.99553 * 358.09577 * 20 18 17 22 22 Si 1.86794 * 120.00427 * 178.10052 * 20 18 17 23 23 H 1.48502 * 109.46874 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47172 * 119.99895 * 22 20 18 25 25 H 1.48494 * 109.47395 * 240.00108 * 22 20 18 26 26 C 1.39006 * 120.02867 * 180.02562 * 13 11 10 27 27 C 1.38582 * 120.01630 * 175.02173 * 5 4 2 28 28 H 1.09007 * 109.46726 * 299.99618 * 1 2 3 29 29 H 1.09001 * 109.47627 * 59.99666 * 1 2 3 30 30 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47194 * 240.00621 * 2 1 3 32 32 H 1.09006 * 109.46654 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47506 * 299.99843 * 3 2 1 34 34 H 1.08998 * 109.47074 * 60.00790 * 3 2 1 35 35 H 1.07992 * 119.95514 * 359.97105 * 6 5 4 36 36 H 1.08007 * 119.92975 * 180.23038 * 7 6 5 37 37 H 1.08009 * 119.97867 * 179.74155 * 8 7 6 38 38 H 0.96995 * 120.00179 * 35.64245 * 10 9 8 39 39 H 1.07997 * 119.82293 * 359.97438 * 14 13 11 40 40 H 1.07997 * 119.79247 * 180.28262 * 15 14 13 41 41 H 1.08009 * 119.97851 * 179.69911 * 16 15 14 42 42 H 0.97002 * 120.00146 * 179.97438 * 21 20 18 43 43 H 1.07999 * 120.20352 * 359.97017 * 26 13 11 44 44 H 1.07991 * 120.06259 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1882 -2.0171 1.0724 6 6 1.8114 -2.6896 -0.0821 7 6 2.0007 -4.0547 -0.1815 8 6 2.5557 -4.7563 0.8713 9 6 2.9294 -4.0896 2.0311 10 7 3.4917 -4.7996 3.0967 11 6 3.2165 -4.4400 4.3660 12 8 2.5567 -3.4429 4.5858 13 6 3.7170 -5.2581 5.4913 14 6 4.4716 -6.4091 5.2388 15 6 4.9487 -7.1760 6.2865 16 6 4.6760 -6.8229 7.5898 17 6 3.9136 -5.6717 7.8633 18 6 3.6324 -5.3062 9.2003 19 1 3.4706 -6.0703 9.9464 20 6 3.5639 -3.9548 9.5567 21 7 3.7966 -3.0297 8.6613 22 14 3.1403 -3.4715 11.3106 23 1 2.9245 -4.6958 12.1229 24 1 4.2575 -2.6838 11.8906 25 1 1.9027 -2.6509 11.3128 26 6 3.4330 -4.8879 6.8007 27 6 2.7450 -2.7173 2.1308 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.3732 -2.1445 -0.9049 36 1 1.7100 -4.5748 -1.0823 37 1 2.6987 -5.8240 0.7926 38 1 4.0799 -5.5509 2.9222 39 1 4.6866 -6.6977 4.2206 40 1 5.5340 -8.0601 6.0813 41 1 5.0479 -7.4295 8.4024 42 1 3.7487 -2.0928 8.9081 43 1 2.8472 -4.0028 7.0002 44 1 3.0352 -2.1964 3.0311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522330761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:31 Heat of formation + Delta-G solvation = -49.335283 kcal Electronic energy + Delta-G solvation = -26209.708761 eV Core-core repulsion = 22477.046519 eV Total energy + Delta-G solvation = -3732.662242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.80445 -40.83582 -39.20594 -38.34761 -35.83129 -35.39114 -34.15403 -32.35401 -31.35838 -30.91755 -30.13395 -28.17216 -27.23156 -25.26738 -23.86967 -23.60013 -22.82595 -21.72124 -21.10748 -19.81163 -19.36501 -17.97828 -17.43360 -17.05656 -16.95694 -16.70858 -16.49826 -16.27792 -15.98786 -15.58386 -15.10811 -14.80600 -14.65525 -14.51816 -14.40452 -14.28881 -13.80364 -13.57359 -13.41782 -13.23106 -12.96115 -12.88995 -12.86313 -12.58724 -12.53818 -12.49521 -12.19963 -11.94161 -11.91294 -11.58420 -11.52368 -11.20289 -11.15871 -10.77891 -9.62978 -9.41123 -9.32453 -9.01357 -8.57364 -6.44923 0.05277 0.45770 0.49512 0.98139 1.35958 1.43471 1.51869 1.93591 1.99087 2.20516 2.33369 2.75868 2.85282 3.61534 3.78727 3.85812 3.91660 4.01316 4.02625 4.21416 4.25985 4.32961 4.39078 4.52733 4.56597 4.65511 4.67592 4.79646 4.83174 4.85463 4.95554 5.06063 5.12552 5.16170 5.23764 5.29325 5.32882 5.33391 5.38880 5.47479 5.48867 5.81025 5.84843 5.89649 6.04119 6.25528 6.42063 6.52781 6.59619 6.89075 6.91957 7.13954 8.38348 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.002959 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.453407 B = 9461.588329 C =11189.201978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.064 3.936 3 C -0.149 4.149 4 O -0.338 6.338 5 C 0.136 3.864 6 C -0.224 4.224 7 C -0.051 4.051 8 C -0.180 4.180 9 C 0.172 3.828 10 N -0.657 5.657 11 C 0.560 3.440 12 O -0.564 6.564 13 C -0.145 4.145 14 C -0.180 4.180 15 C -0.101 4.101 16 C -0.197 4.197 17 C 0.062 3.938 18 C -0.500 4.500 19 H 0.083 0.917 20 C 0.022 3.978 21 N -0.846 5.846 22 Si 0.988 3.012 23 H -0.250 1.250 24 H -0.267 1.267 25 H -0.273 1.273 26 C -0.112 4.112 27 C -0.196 4.196 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.158 0.842 36 H 0.172 0.828 37 H 0.158 0.842 38 H 0.427 0.573 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.114 0.886 42 H 0.282 0.718 43 H 0.097 0.903 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 0.258 -21.286 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.009 3.991 3 C -0.206 4.206 4 O -0.253 6.253 5 C 0.090 3.910 6 C -0.243 4.243 7 C -0.069 4.069 8 C -0.200 4.200 9 C 0.077 3.923 10 N -0.304 5.304 11 C 0.351 3.649 12 O -0.443 6.443 13 C -0.149 4.149 14 C -0.199 4.199 15 C -0.119 4.119 16 C -0.217 4.217 17 C 0.060 3.940 18 C -0.531 4.531 19 H 0.101 0.899 20 C -0.190 4.190 21 N -0.474 5.474 22 Si 0.809 3.191 23 H -0.173 1.173 24 H -0.192 1.192 25 H -0.198 1.198 26 C -0.133 4.133 27 C -0.218 4.218 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.175 0.825 36 H 0.190 0.810 37 H 0.175 0.825 38 H 0.268 0.732 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.132 0.868 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.865 1.306 -20.940 21.175 hybrid contribution 0.087 0.483 1.273 1.364 sum -2.778 1.789 -19.667 19.942 Atomic orbital electron populations 1.22345 0.94121 1.02975 1.03780 1.22838 0.95199 0.94177 0.86915 1.21925 1.01803 0.92961 1.03901 1.86154 1.81250 1.17613 1.40300 1.18887 0.94828 0.83185 0.94094 1.21525 1.08329 0.96543 0.97895 1.21188 0.94355 0.92789 0.98611 1.21174 1.04494 1.01415 0.92900 1.17719 0.96262 0.89632 0.88694 1.43273 1.49093 1.34589 1.03398 1.18970 0.78351 0.83981 0.83549 1.90720 1.40688 1.27661 1.85204 1.19671 1.04802 0.98331 0.92060 1.20978 1.03715 0.95639 0.99616 1.20991 0.99488 0.99616 0.91821 1.21598 1.02538 1.00427 0.97116 1.17985 0.90343 0.92027 0.93622 1.19837 1.45309 0.92952 0.95003 0.89852 1.26843 0.92093 0.96111 1.03943 1.69880 1.38187 1.02172 1.37129 0.85059 0.78424 0.79131 0.76473 1.17348 1.19157 1.19798 1.21524 1.00224 1.00477 0.91082 1.20427 1.08177 0.93784 0.99371 0.92937 0.88014 0.92413 0.88814 0.92281 0.87490 0.92634 0.82476 0.81024 0.82463 0.73219 0.83942 0.83677 0.86821 0.90805 0.88469 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.28 71.98 0.67 -2.24 16 2 C 0.06 1.24 2.83 30.59 0.09 1.32 16 3 C -0.15 -2.39 9.56 71.98 0.69 -1.71 16 4 O -0.34 -10.42 9.78 -92.40 -0.90 -11.33 16 5 C 0.14 4.24 6.63 22.49 0.15 4.39 16 6 C -0.22 -4.90 8.45 22.39 0.19 -4.72 16 7 C -0.05 -0.95 10.03 22.23 0.22 -0.73 16 8 C -0.18 -4.10 9.96 22.41 0.22 -3.88 16 9 C 0.17 5.59 6.29 38.16 0.24 5.83 16 10 N -0.66 -22.31 5.27 -306.13 -1.61 -23.92 16 11 C 0.56 25.56 7.62 86.79 0.66 26.22 16 12 O -0.56 -30.74 13.79 -3.91 -0.05 -30.79 16 13 C -0.15 -6.90 5.87 -20.14 -0.12 -7.02 16 14 C -0.18 -6.83 9.54 22.70 0.22 -6.62 16 15 C -0.10 -3.85 10.01 22.18 0.22 -3.63 16 16 C -0.20 -9.02 9.78 22.77 0.22 -8.79 16 17 C 0.06 3.39 5.51 -21.32 -0.12 3.28 16 18 C -0.50 -27.61 9.04 23.47 0.21 -27.40 16 19 H 0.08 4.33 7.85 -2.91 -0.02 4.31 16 20 C 0.02 1.17 5.36 85.25 0.46 1.63 16 21 N -0.85 -48.94 10.84 21.82 0.24 -48.71 16 22 Si 0.99 41.01 29.56 68.60 2.03 43.04 16 23 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 C -0.11 -6.33 8.17 23.01 0.19 -6.14 16 27 C -0.20 -7.48 8.63 22.49 0.19 -7.29 16 28 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.02 7.37 -2.39 -0.02 1.00 16 31 H 0.09 1.41 6.05 -2.38 -0.01 1.39 16 32 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.16 2.39 5.58 -2.91 -0.02 2.37 16 36 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.43 10.96 6.86 -92.71 -0.64 10.33 16 39 H 0.14 3.91 6.40 -2.91 -0.02 3.89 16 40 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 41 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 42 H 0.28 15.15 8.30 -92.71 -0.77 14.38 16 43 H 0.10 6.20 5.96 -2.91 -0.02 6.18 16 44 H 0.10 4.75 6.25 -2.92 -0.02 4.73 16 Total: -1.00 -76.71 366.68 4.70 -72.01 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.40 Total: 37.16 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 4.61 Total: -37.47 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.38 Total: -72.63 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -0.96 Total: -42.12 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -76.71 4.70 -72.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522330761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.677 kcal (2) G-P(sol) polarization free energy of solvation -76.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds