Wall clock time and date at job start Tue Mar 31 2020 16:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47061 * 2 1 4 4 O 1.42898 * 109.47170 * 119.99676 * 2 1 3 5 5 C 1.35653 * 116.99863 * 83.05297 * 4 2 1 6 6 C 1.38711 * 120.15237 * 358.50571 * 5 4 2 7 7 C 1.38055 * 120.08490 * 180.29918 * 6 5 4 8 8 C 1.38554 * 120.39435 * 359.72442 * 7 6 5 9 9 C 1.37783 * 120.29907 * 359.97438 * 8 7 6 10 10 C 1.39721 * 119.90799 * 0.02562 * 9 8 7 11 11 C 1.47506 * 120.19192 * 180.02562 * 10 9 8 12 12 O 1.21596 * 120.00316 * 180.02562 * 11 10 9 13 13 N 1.34779 * 119.99937 * 0.27649 * 11 10 9 14 14 C 1.39866 * 120.00010 * 174.48577 * 13 11 10 15 15 C 1.39307 * 119.95138 * 327.23226 * 14 13 11 16 16 C 1.38478 * 120.42965 * 179.71735 * 15 14 13 17 17 C 1.37687 * 120.32202 * 0.55374 * 16 15 14 18 18 C 1.40746 * 119.88859 * 359.72348 * 17 16 15 19 19 C 1.41411 * 120.20837 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99753 * 146.81033 * 19 18 17 21 21 C 1.39931 * 119.99986 * 326.80212 * 19 18 17 22 22 N 1.30825 * 119.99827 * 169.19164 * 21 19 18 23 23 Si 1.86804 * 119.99868 * 349.19008 * 21 19 18 24 24 H 1.48501 * 109.46775 * 88.59319 * 23 21 19 25 25 H 1.48502 * 109.46662 * 208.59097 * 23 21 19 26 26 H 1.48495 * 109.47127 * 328.59016 * 23 21 19 27 27 C 1.38258 * 119.94894 * 147.49563 * 14 13 11 28 28 H 1.08993 * 109.47030 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47076 * 300.00261 * 1 2 3 30 30 H 1.09005 * 109.47069 * 59.99803 * 1 2 3 31 31 H 1.08991 * 109.46980 * 239.99905 * 2 1 3 32 32 H 1.09000 * 109.47080 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46890 * 299.99890 * 3 2 1 34 34 H 1.08996 * 109.47048 * 59.99703 * 3 2 1 35 35 H 1.07998 * 119.95602 * 0.02562 * 6 5 4 36 36 H 1.07997 * 119.80116 * 179.74069 * 7 6 5 37 37 H 1.07993 * 119.85114 * 180.02562 * 8 7 6 38 38 H 1.08005 * 120.04795 * 180.02562 * 9 8 7 39 39 H 0.96995 * 120.00249 * 354.49152 * 13 11 10 40 40 H 1.08001 * 119.78444 * 359.97427 * 15 14 13 41 41 H 1.08000 * 119.84238 * 180.27568 * 16 15 14 42 42 H 1.08006 * 120.05764 * 179.74712 * 17 16 15 43 43 H 0.97009 * 119.99973 * 179.97438 * 22 21 19 44 44 H 1.08005 * 120.16222 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0738 -2.0273 1.1120 6 6 1.6610 -2.6999 -0.0288 7 6 1.7245 -4.0780 -0.0807 8 6 2.2049 -4.7989 1.0006 9 6 2.6250 -4.1469 2.1393 10 6 2.5663 -2.7524 2.2055 11 6 3.0149 -2.0480 3.4213 12 8 2.9618 -0.8344 3.4754 13 7 3.4884 -2.7491 4.4705 14 6 4.0205 -2.0788 5.5767 15 6 4.6882 -0.8688 5.4017 16 6 5.2138 -0.1939 6.4906 17 6 5.0920 -0.7177 7.7581 18 6 4.4250 -1.9422 7.9498 19 6 4.2955 -2.4862 9.2486 20 1 3.4162 -3.0561 9.5101 21 6 5.3067 -2.2861 10.1950 22 7 5.1013 -2.6007 11.4481 23 14 6.9498 -1.5699 9.6690 24 1 6.8897 -0.0879 9.7417 25 1 8.0184 -2.0670 10.5724 26 1 7.2473 -1.9855 8.2747 27 6 3.8879 -2.6209 6.8417 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.2853 -2.1450 -0.8757 36 1 1.3979 -4.5972 -0.9696 37 1 2.2511 -5.8766 0.9503 38 1 2.9992 -4.7128 2.9797 39 1 3.4601 -3.7186 4.4584 40 1 4.7930 -0.4523 4.4107 41 1 5.7258 0.7458 6.3445 42 1 5.5071 -0.1897 8.6039 43 1 5.8024 -2.4624 12.1041 44 1 3.3737 -3.5609 6.9781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525934401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:39 Heat of formation + Delta-G solvation = -24.682256 kcal Electronic energy + Delta-G solvation = -26621.228161 eV Core-core repulsion = 22889.634955 eV Total energy + Delta-G solvation = -3731.593206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.79777 -39.41683 -37.83880 -37.18275 -34.43924 -33.39777 -33.19561 -31.49517 -30.23985 -29.98524 -28.51351 -27.50843 -25.08628 -24.18390 -23.51207 -21.53451 -21.19113 -20.93609 -19.75938 -18.66154 -17.67212 -17.16242 -16.19620 -15.90713 -15.72936 -15.21015 -15.12823 -15.03820 -14.68060 -14.36509 -14.06336 -13.61086 -13.55552 -13.36383 -12.92644 -12.62818 -12.59116 -12.57637 -12.47461 -12.07649 -12.04529 -11.95099 -11.64597 -11.52477 -11.07110 -11.00840 -10.86024 -10.69672 -10.51644 -10.08172 -9.70103 -9.45957 -9.28305 -9.24545 -8.88616 -8.38771 -7.61383 -7.07378 -6.83567 -4.45463 0.72197 1.19560 2.47532 2.67799 2.99196 3.10786 3.18338 3.27041 3.37161 3.51645 3.84914 4.05034 4.44344 4.51245 4.56571 4.61021 4.67343 4.78620 4.84929 4.98701 5.13753 5.21290 5.28134 5.43831 5.44240 5.53238 5.55829 5.59597 5.85404 5.91439 5.99686 6.03067 6.09733 6.20011 6.39212 6.45623 6.48596 6.59716 6.76949 6.83869 7.21260 7.30194 7.38007 7.52421 7.70900 7.90696 7.99549 8.17436 8.41293 8.62206 8.70850 8.87588 10.19654 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.002904 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.539461 B = 9640.755370 C =10547.436772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.070 3.930 3 C -0.147 4.147 4 O -0.270 6.270 5 C 0.189 3.811 6 C -0.225 4.225 7 C -0.056 4.056 8 C -0.169 4.169 9 C -0.048 4.048 10 C -0.168 4.168 11 C 0.552 3.448 12 O -0.498 6.498 13 N -0.668 5.668 14 C 0.170 3.830 15 C -0.225 4.225 16 C -0.069 4.069 17 C -0.244 4.244 18 C 0.107 3.893 19 C -0.452 4.452 20 H 0.090 0.910 21 C 0.083 3.917 22 N -0.821 5.821 23 Si 0.915 3.085 24 H -0.270 1.270 25 H -0.295 1.295 26 H -0.246 1.246 27 C -0.229 4.229 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.399 0.601 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.284 0.716 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.833 -1.608 -24.044 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.014 3.986 3 C -0.204 4.204 4 O -0.182 6.182 5 C 0.141 3.859 6 C -0.244 4.244 7 C -0.075 4.075 8 C -0.188 4.188 9 C -0.066 4.066 10 C -0.172 4.172 11 C 0.339 3.661 12 O -0.372 6.372 13 N -0.313 5.313 14 C 0.077 3.923 15 C -0.246 4.246 16 C -0.088 4.088 17 C -0.263 4.263 18 C 0.104 3.896 19 C -0.481 4.481 20 H 0.108 0.892 21 C -0.134 4.134 22 N -0.446 5.446 23 Si 0.743 3.257 24 H -0.196 1.196 25 H -0.223 1.223 26 H -0.169 1.169 27 C -0.251 4.251 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.235 0.765 40 H 0.127 0.873 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.094 0.906 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.786 -0.621 -23.606 24.313 hybrid contribution 0.515 -0.359 -0.245 0.674 sum -5.271 -0.980 -23.851 24.446 Atomic orbital electron populations 1.22398 0.95031 1.03010 1.03357 1.22543 0.94414 0.94242 0.87415 1.21812 1.02341 0.93212 1.03028 1.86472 1.78795 1.14859 1.38047 1.19016 0.91113 0.83378 0.92402 1.21269 1.09015 0.95699 0.98425 1.21095 0.95075 0.93193 0.98119 1.20970 1.03584 1.00316 0.93881 1.21239 0.95211 0.92077 0.98118 1.19462 1.09553 0.93302 0.94898 1.17982 0.78140 0.87379 0.82582 1.90835 1.52438 1.12924 1.81011 1.43408 1.60940 1.09759 1.17187 1.17501 0.95517 0.93946 0.85291 1.20406 1.07751 0.97997 0.98455 1.20504 0.97864 0.97751 0.92688 1.21188 1.10658 0.98314 0.96181 1.17506 0.89359 0.90021 0.92750 1.19402 1.05664 1.29938 0.93145 0.89238 1.26090 1.01031 0.92401 0.93893 1.69648 1.34896 1.37935 1.02167 0.86305 0.80047 0.79230 0.80108 1.19633 1.22268 1.16942 1.20764 1.12235 1.02045 0.90014 0.91953 0.91085 0.91037 0.91088 0.91520 0.90721 0.91043 0.84769 0.85484 0.85279 0.84866 0.76524 0.87252 0.88433 0.87862 0.90611 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.17 37.16 0.34 -1.18 16 2 C 0.07 0.70 2.86 -26.73 -0.08 0.62 16 3 C -0.15 -1.34 9.56 37.16 0.36 -0.99 16 4 O -0.27 -3.94 7.88 -40.54 -0.32 -4.26 16 5 C 0.19 2.55 6.58 -38.69 -0.25 2.30 16 6 C -0.23 -2.24 8.20 -39.47 -0.32 -2.56 16 7 C -0.06 -0.48 10.03 -39.53 -0.40 -0.87 16 8 C -0.17 -1.50 10.02 -39.63 -0.40 -1.90 16 9 C -0.05 -0.52 9.53 -39.19 -0.37 -0.90 16 10 C -0.17 -2.43 5.89 -104.85 -0.62 -3.05 16 11 C 0.55 10.10 7.50 -12.48 -0.09 10.01 16 12 O -0.50 -10.89 12.79 -16.60 -0.21 -11.11 16 13 N -0.67 -11.98 5.28 -10.86 -0.06 -12.04 16 14 C 0.17 3.75 6.28 -83.79 -0.53 3.23 16 15 C -0.23 -5.20 8.66 -39.10 -0.34 -5.54 16 16 C -0.07 -1.61 10.02 -39.69 -0.40 -2.01 16 17 C -0.24 -6.11 7.08 -38.84 -0.28 -6.38 16 18 C 0.11 2.78 5.10 -106.85 -0.54 2.23 16 19 C -0.45 -12.45 9.60 -37.74 -0.36 -12.81 16 20 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 21 C 0.08 2.22 5.47 -17.35 -0.09 2.13 16 22 N -0.82 -22.41 13.93 55.55 0.77 -21.63 16 23 Si 0.92 21.41 24.44 -169.99 -4.15 17.26 16 24 H -0.27 -6.15 6.51 56.52 0.37 -5.79 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.25 -5.86 6.85 56.52 0.39 -5.47 16 27 C -0.23 -5.39 9.70 -38.68 -0.38 -5.77 16 28 H 0.06 0.52 6.97 -51.93 -0.36 0.16 16 29 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.58 6.23 -51.93 -0.32 0.25 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.13 1.03 5.50 -52.49 -0.29 0.74 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.13 1.19 6.42 -52.48 -0.34 0.85 16 39 H 0.40 5.66 6.86 -40.82 -0.28 5.38 16 40 H 0.11 2.51 6.35 -52.49 -0.33 2.18 16 41 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 42 H 0.10 2.56 4.46 -52.48 -0.23 2.33 16 43 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 44 H 0.10 2.26 8.06 -52.48 -0.42 1.83 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -32.73 358.14 -8.89 -41.62 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.57 Total: 8.19 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -4.75 Total: -23.43 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.72 Total: -33.67 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.53 Total: -15.37 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.15 Total: 17.26 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.73 -8.89 -41.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525934401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.939 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds