Wall clock time and date at job start Tue Mar 31 2020 16:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47061 * 2 1 4 4 O 1.42898 * 109.47170 * 119.99676 * 2 1 3 5 5 C 1.35653 * 116.99863 * 83.05297 * 4 2 1 6 6 C 1.38711 * 120.15237 * 358.50571 * 5 4 2 7 7 C 1.38055 * 120.08490 * 180.29918 * 6 5 4 8 8 C 1.38554 * 120.39435 * 359.72442 * 7 6 5 9 9 C 1.37783 * 120.29907 * 359.97438 * 8 7 6 10 10 C 1.39721 * 119.90799 * 0.02562 * 9 8 7 11 11 C 1.47506 * 120.19192 * 180.02562 * 10 9 8 12 12 O 1.21596 * 120.00316 * 180.02562 * 11 10 9 13 13 N 1.34779 * 119.99937 * 0.27649 * 11 10 9 14 14 C 1.39866 * 120.00010 * 174.48577 * 13 11 10 15 15 C 1.39307 * 119.95138 * 327.23226 * 14 13 11 16 16 C 1.38478 * 120.42965 * 179.71735 * 15 14 13 17 17 C 1.37687 * 120.32202 * 0.55374 * 16 15 14 18 18 C 1.40746 * 119.88859 * 359.72348 * 17 16 15 19 19 C 1.41411 * 120.20837 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99753 * 146.81033 * 19 18 17 21 21 C 1.39931 * 119.99986 * 326.80212 * 19 18 17 22 22 N 1.30825 * 119.99827 * 169.19164 * 21 19 18 23 23 Si 1.86804 * 119.99868 * 349.19008 * 21 19 18 24 24 H 1.48501 * 109.46775 * 88.59319 * 23 21 19 25 25 H 1.48502 * 109.46662 * 208.59097 * 23 21 19 26 26 H 1.48495 * 109.47127 * 328.59016 * 23 21 19 27 27 C 1.38258 * 119.94894 * 147.49563 * 14 13 11 28 28 H 1.08993 * 109.47030 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47076 * 300.00261 * 1 2 3 30 30 H 1.09005 * 109.47069 * 59.99803 * 1 2 3 31 31 H 1.08991 * 109.46980 * 239.99905 * 2 1 3 32 32 H 1.09000 * 109.47080 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46890 * 299.99890 * 3 2 1 34 34 H 1.08996 * 109.47048 * 59.99703 * 3 2 1 35 35 H 1.07998 * 119.95602 * 0.02562 * 6 5 4 36 36 H 1.07997 * 119.80116 * 179.74069 * 7 6 5 37 37 H 1.07993 * 119.85114 * 180.02562 * 8 7 6 38 38 H 1.08005 * 120.04795 * 180.02562 * 9 8 7 39 39 H 0.96995 * 120.00249 * 354.49152 * 13 11 10 40 40 H 1.08001 * 119.78444 * 359.97427 * 15 14 13 41 41 H 1.08000 * 119.84238 * 180.27568 * 16 15 14 42 42 H 1.08006 * 120.05764 * 179.74712 * 17 16 15 43 43 H 0.97009 * 119.99973 * 179.97438 * 22 21 19 44 44 H 1.08005 * 120.16222 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0738 -2.0273 1.1120 6 6 1.6610 -2.6999 -0.0288 7 6 1.7245 -4.0780 -0.0807 8 6 2.2049 -4.7989 1.0006 9 6 2.6250 -4.1469 2.1393 10 6 2.5663 -2.7524 2.2055 11 6 3.0149 -2.0480 3.4213 12 8 2.9618 -0.8344 3.4754 13 7 3.4884 -2.7491 4.4705 14 6 4.0205 -2.0788 5.5767 15 6 4.6882 -0.8688 5.4017 16 6 5.2138 -0.1939 6.4906 17 6 5.0920 -0.7177 7.7581 18 6 4.4250 -1.9422 7.9498 19 6 4.2955 -2.4862 9.2486 20 1 3.4162 -3.0561 9.5101 21 6 5.3067 -2.2861 10.1950 22 7 5.1013 -2.6007 11.4481 23 14 6.9498 -1.5699 9.6690 24 1 6.8897 -0.0879 9.7417 25 1 8.0184 -2.0670 10.5724 26 1 7.2473 -1.9855 8.2747 27 6 3.8879 -2.6209 6.8417 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.2853 -2.1450 -0.8757 36 1 1.3979 -4.5972 -0.9696 37 1 2.2511 -5.8766 0.9503 38 1 2.9992 -4.7128 2.9797 39 1 3.4601 -3.7186 4.4584 40 1 4.7930 -0.4523 4.4107 41 1 5.7258 0.7458 6.3445 42 1 5.5071 -0.1897 8.6039 43 1 5.8024 -2.4624 12.1041 44 1 3.3737 -3.5609 6.9781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525934401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:38 Heat of formation + Delta-G solvation = -43.521799 kcal Electronic energy + Delta-G solvation = -26622.045105 eV Core-core repulsion = 22889.634955 eV Total energy + Delta-G solvation = -3732.410150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.85484 -40.75652 -39.18173 -38.44127 -36.12663 -35.07505 -34.17108 -32.57634 -32.11396 -30.84296 -30.14085 -28.19441 -27.06643 -25.29865 -24.39596 -22.98067 -22.91642 -21.85578 -21.21085 -19.81431 -19.32887 -18.29864 -17.81858 -17.32520 -16.72594 -16.58362 -16.43563 -16.11434 -15.96758 -15.70197 -15.35620 -15.02164 -14.66406 -14.56171 -14.40901 -14.18762 -13.92577 -13.63658 -13.50425 -13.26321 -13.16714 -12.90024 -12.80922 -12.78444 -12.60838 -12.41778 -12.26427 -11.93432 -11.81308 -11.62600 -11.60045 -11.16382 -11.04786 -10.60514 -10.08759 -9.55531 -9.24477 -8.85943 -8.84832 -6.54322 -0.19398 0.41078 0.70573 0.76148 1.28677 1.40927 1.50049 1.90973 2.11084 2.14559 2.22296 2.62984 2.85832 3.45016 3.63604 3.77071 3.78865 3.92472 4.04794 4.12448 4.23336 4.27246 4.38450 4.47917 4.50168 4.57662 4.65541 4.77390 4.79874 4.81665 4.84078 4.87801 4.94885 4.98250 5.12440 5.22406 5.24544 5.32903 5.36595 5.46290 5.56814 5.67212 5.78147 5.79380 5.91315 6.19714 6.34312 6.46522 6.60264 6.69118 6.82005 7.23326 8.23130 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.002904 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.539461 B = 9640.755370 C =10547.436772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.060 3.940 3 C -0.146 4.146 4 O -0.309 6.309 5 C 0.170 3.830 6 C -0.224 4.224 7 C -0.041 4.041 8 C -0.164 4.164 9 C -0.050 4.050 10 C -0.204 4.204 11 C 0.549 3.451 12 O -0.543 6.543 13 N -0.661 5.661 14 C 0.176 3.824 15 C -0.227 4.227 16 C -0.070 4.070 17 C -0.258 4.258 18 C 0.090 3.910 19 C -0.482 4.482 20 H 0.059 0.941 21 C 0.048 3.952 22 N -0.857 5.857 23 Si 0.968 3.032 24 H -0.259 1.259 25 H -0.279 1.279 26 H -0.254 1.254 27 C -0.235 4.235 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.107 0.893 34 H 0.049 0.951 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.163 0.837 38 H 0.147 0.853 39 H 0.417 0.583 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.104 0.896 43 H 0.293 0.707 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 -2.627 -27.901 28.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.005 3.995 3 C -0.203 4.203 4 O -0.222 6.222 5 C 0.121 3.879 6 C -0.243 4.243 7 C -0.059 4.059 8 C -0.182 4.182 9 C -0.068 4.068 10 C -0.208 4.208 11 C 0.340 3.660 12 O -0.421 6.421 13 N -0.307 5.307 14 C 0.082 3.918 15 C -0.247 4.247 16 C -0.089 4.089 17 C -0.278 4.278 18 C 0.087 3.913 19 C -0.512 4.512 20 H 0.077 0.923 21 C -0.166 4.166 22 N -0.485 5.485 23 Si 0.792 3.208 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.177 1.177 27 C -0.257 4.257 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.068 0.932 35 H 0.176 0.824 36 H 0.185 0.815 37 H 0.180 0.820 38 H 0.165 0.835 39 H 0.256 0.744 40 H 0.129 0.871 41 H 0.145 0.855 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.807 -1.678 -27.479 28.136 hybrid contribution 0.379 -0.083 0.694 0.795 sum -5.427 -1.761 -26.785 27.386 Atomic orbital electron populations 1.22364 0.93920 1.03224 1.03689 1.22857 0.95352 0.94229 0.87045 1.21858 1.01594 0.93302 1.03559 1.86430 1.79412 1.15885 1.40430 1.19344 0.91824 0.83297 0.93393 1.21559 1.08317 0.96627 0.97751 1.21635 0.92595 0.92582 0.99114 1.21398 1.01971 1.01995 0.92852 1.21471 0.95016 0.90657 0.99678 1.19327 1.12966 0.94732 0.93786 1.18693 0.76883 0.87111 0.83319 1.90796 1.54415 1.14960 1.81897 1.43353 1.60553 1.10704 1.16123 1.17548 0.94372 0.93705 0.86126 1.20635 1.07252 0.98284 0.98578 1.20816 0.97439 0.98720 0.91899 1.21268 1.11267 0.98228 0.97006 1.17655 0.90214 0.90687 0.92702 1.19389 1.05668 1.31460 0.94728 0.92291 1.26745 1.03581 0.92546 0.93707 1.69675 1.36314 1.39446 1.03015 0.85497 0.76722 0.79157 0.79426 1.18489 1.20541 1.17744 1.20908 1.12086 1.02603 0.90126 0.91756 0.93239 0.88154 0.88822 0.92704 0.87459 0.93170 0.82441 0.81490 0.81986 0.83503 0.74400 0.87115 0.85532 0.87787 0.89665 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.17 71.98 0.66 -2.01 16 2 C 0.06 1.14 2.86 30.60 0.09 1.22 16 3 C -0.15 -2.61 9.56 71.98 0.69 -1.92 16 4 O -0.31 -9.08 7.88 -68.76 -0.54 -9.62 16 5 C 0.17 4.40 6.58 22.85 0.15 4.55 16 6 C -0.22 -3.73 8.20 22.34 0.18 -3.55 16 7 C -0.04 -0.50 10.03 22.30 0.22 -0.27 16 8 C -0.16 -2.21 10.02 22.24 0.22 -1.99 16 9 C -0.05 -0.98 9.53 22.52 0.21 -0.76 16 10 C -0.20 -5.76 5.89 -20.01 -0.12 -5.88 16 11 C 0.55 20.35 7.50 86.69 0.65 21.00 16 12 O -0.54 -24.52 12.79 16.90 0.22 -24.30 16 13 N -0.66 -23.62 5.28 -306.52 -1.62 -25.24 16 14 C 0.18 7.83 6.28 38.12 0.24 8.07 16 15 C -0.23 -10.45 8.66 22.58 0.20 -10.25 16 16 C -0.07 -3.22 10.02 22.20 0.22 -2.99 16 17 C -0.26 -12.95 7.08 22.75 0.16 -12.79 16 18 C 0.09 4.80 5.10 -21.31 -0.11 4.69 16 19 C -0.48 -27.68 9.60 23.46 0.23 -27.45 16 20 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 21 C 0.05 2.61 5.47 85.25 0.47 3.08 16 22 N -0.86 -48.06 13.93 21.82 0.30 -47.76 16 23 Si 0.97 44.22 24.44 68.60 1.68 45.90 16 24 H -0.26 -11.31 6.51 99.48 0.65 -10.66 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.25 -11.80 6.85 99.48 0.68 -11.12 16 27 C -0.24 -11.26 9.70 22.85 0.22 -11.04 16 28 H 0.06 0.94 6.97 -2.39 -0.02 0.93 16 29 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.10 0.91 8.14 -2.38 -0.02 0.90 16 31 H 0.09 1.28 6.23 -2.39 -0.01 1.26 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.16 1.78 5.50 -2.91 -0.02 1.76 16 36 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.15 2.29 6.42 -2.91 -0.02 2.28 16 39 H 0.42 11.51 6.86 -92.71 -0.64 10.87 16 40 H 0.11 5.11 6.35 -2.91 -0.02 5.09 16 41 H 0.13 4.98 8.06 -2.91 -0.02 4.95 16 42 H 0.10 5.14 4.46 -2.91 -0.01 5.13 16 43 H 0.29 14.79 8.30 -92.70 -0.77 14.02 16 44 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -75.32 358.14 4.94 -70.38 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.32 Total: 28.94 kcal Atomic # 6 Polarization: -42.89 SS G_CDS: 4.59 Total: -38.30 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -1.31 Total: -73.00 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.33 Total: -33.92 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.68 Total: 45.90 kcal Total: -75.32 4.94 -70.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525934401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.860 kcal (2) G-P(sol) polarization free energy of solvation -75.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds