Wall clock time and date at job start Tue Mar 31 2020 16:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35903 * 117.00018 * 2 1 4 4 C 1.38729 * 120.05352 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94151 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05363 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94139 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47255 * 340.00138 * 7 6 5 9 9 C 1.53001 * 109.47198 * 100.00202 * 7 6 5 10 10 N 1.46499 * 109.47072 * 220.00178 * 7 6 5 11 11 C 1.34773 * 119.99969 * 155.00089 * 10 7 6 12 12 O 1.21613 * 119.99984 * 359.97438 * 11 10 7 13 13 C 1.47432 * 120.00087 * 180.02562 * 11 10 7 14 14 C 1.39221 * 120.28191 * 354.15856 * 13 11 10 15 15 C 1.38219 * 120.09408 * 180.28199 * 14 13 11 16 16 C 1.38837 * 120.67272 * 359.48535 * 15 14 13 17 17 C 1.37594 * 120.56942 * 0.51470 * 16 15 14 18 18 C 1.40708 * 119.88158 * 359.74779 * 17 16 15 19 19 C 1.40887 * 120.32556 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00051 * 145.82798 * 19 18 17 21 21 C 1.40269 * 120.00285 * 325.83324 * 19 18 17 22 22 N 1.30630 * 120.00217 * 350.76242 * 21 19 18 23 23 Si 1.86801 * 120.00261 * 170.75831 * 21 19 18 24 24 H 1.48509 * 109.47026 * 59.99968 * 23 21 19 25 25 H 1.48499 * 109.47644 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47209 * 300.00372 * 23 21 19 27 27 C 1.38265 * 120.11409 * 0.27723 * 6 5 4 28 28 C 1.38140 * 120.05294 * 359.45243 * 27 6 5 29 29 H 1.08996 * 109.46835 * 59.99970 * 1 2 3 30 30 H 1.09002 * 109.46831 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46934 * 300.00033 * 1 2 3 32 32 H 1.07995 * 120.02884 * 359.95071 * 4 3 2 33 33 H 1.07998 * 119.96954 * 180.02562 * 5 4 3 34 34 H 1.08991 * 109.46713 * 59.99642 * 9 7 6 35 35 H 1.08994 * 109.47335 * 180.02562 * 9 7 6 36 36 H 1.09001 * 109.46559 * 299.99741 * 9 7 6 37 37 H 0.96999 * 120.00277 * 335.00432 * 10 7 6 38 38 H 1.07997 * 119.95494 * 0.02562 * 14 13 11 39 39 H 1.08000 * 119.66640 * 179.72473 * 15 14 13 40 40 H 1.08003 * 119.71317 * 180.28372 * 16 15 14 41 41 H 1.07997 * 120.05688 * 179.76668 * 17 16 15 42 42 H 0.97003 * 120.00323 * 180.02562 * 22 21 19 43 43 H 1.07992 * 119.97029 * 179.70014 * 27 6 5 44 44 H 1.08000 * 120.02727 * 180.27779 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5169 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0185 -0.0028 8 1 5.0117 4.9041 0.3484 9 6 3.9939 5.5857 -1.4237 10 7 3.2654 5.9346 0.8847 11 6 3.9099 6.9781 1.4433 12 8 5.0899 7.1590 1.2111 13 6 3.1848 7.8997 2.3369 14 6 1.8097 7.7706 2.5125 15 6 1.1329 8.6404 3.3466 16 6 1.8119 9.6429 4.0259 17 6 3.1708 9.7954 3.8727 18 6 3.8826 8.9265 3.0252 19 6 5.2742 9.0738 2.8618 20 1 5.8959 8.2030 2.7151 21 6 5.8523 10.3515 2.8898 22 7 5.0911 11.4131 2.8855 23 14 7.7107 10.5352 2.9332 24 1 8.2991 9.9015 1.7258 25 1 8.0654 11.9770 2.9575 26 1 8.2453 9.8728 4.1500 27 6 1.9211 3.6048 0.0042 28 6 1.2916 2.3752 -0.0009 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0209 0.3799 -0.0002 33 1 5.1346 2.5750 -0.0019 34 1 2.9685 5.7001 -1.7748 35 1 4.4892 6.5567 -1.4247 36 1 4.5302 4.9041 -2.0840 37 1 2.3244 5.7901 1.0703 38 1 1.2705 6.9924 1.9929 39 1 0.0654 8.5367 3.4743 40 1 1.2683 10.3111 4.6774 41 1 3.6901 10.5804 4.4022 42 1 5.4908 12.2967 2.9045 43 1 1.3343 4.5113 0.0086 44 1 0.2130 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001543480731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:56 Heat of formation + Delta-G solvation = -47.108576 kcal Electronic energy + Delta-G solvation = -26561.100494 eV Core-core repulsion = 22828.534810 eV Total energy + Delta-G solvation = -3732.565685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.34276 -40.62776 -39.09036 -38.28802 -36.06681 -35.46552 -32.78115 -32.06373 -31.69017 -30.87414 -29.76065 -28.02960 -27.29948 -24.94990 -24.10838 -23.32683 -22.72142 -21.58046 -20.96470 -19.44048 -19.10346 -18.20249 -17.38904 -17.06253 -16.75028 -16.61208 -16.13810 -15.86220 -15.73262 -15.58265 -15.03722 -14.79995 -14.68491 -14.48542 -14.46203 -14.12075 -13.99981 -13.55255 -13.42402 -13.26168 -12.90375 -12.82930 -12.78868 -12.68412 -12.48177 -12.28051 -11.98039 -11.88689 -11.88497 -11.70759 -11.46922 -11.12650 -10.26342 -9.99851 -9.93500 -9.38312 -9.21324 -9.09266 -8.66128 -6.34449 0.36074 0.37977 0.54389 1.03258 1.33736 1.45155 1.51814 2.21613 2.37414 2.39421 2.45338 2.79759 2.81518 3.65680 3.74601 3.81332 3.95621 4.24527 4.26948 4.35054 4.37915 4.40623 4.42607 4.47250 4.55415 4.61026 4.67427 4.75608 4.78790 4.86013 5.00176 5.06863 5.11826 5.20472 5.26142 5.28223 5.35724 5.36617 5.54653 5.63344 5.76071 5.79296 5.84438 6.07424 6.12265 6.35930 6.44517 6.66015 6.81763 6.94018 7.02816 7.69760 8.31278 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.003030 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.396767 B = 9239.107466 C =10400.020236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.116 3.884 4 C -0.157 4.157 5 C -0.074 4.074 6 C -0.130 4.130 7 C 0.190 3.810 8 H 0.070 0.930 9 C -0.149 4.149 10 N -0.723 5.723 11 C 0.562 3.438 12 O -0.576 6.576 13 C -0.279 4.279 14 C -0.054 4.054 15 C -0.236 4.236 16 C -0.093 4.093 17 C -0.177 4.177 18 C 0.114 3.886 19 C -0.456 4.456 20 H 0.082 0.918 21 C 0.031 3.969 22 N -0.824 5.824 23 Si 0.978 3.022 24 H -0.273 1.273 25 H -0.260 1.260 26 H -0.258 1.258 27 C -0.077 4.077 28 C -0.202 4.202 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.063 0.937 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.080 0.920 37 H 0.403 0.597 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.289 0.711 43 H 0.136 0.864 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.676 -17.333 -6.139 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.070 3.930 4 C -0.175 4.175 5 C -0.093 4.093 6 C -0.131 4.131 7 C 0.086 3.914 8 H 0.088 0.912 9 C -0.207 4.207 10 N -0.377 5.377 11 C 0.355 3.645 12 O -0.457 6.457 13 C -0.284 4.284 14 C -0.073 4.073 15 C -0.255 4.255 16 C -0.111 4.111 17 C -0.197 4.197 18 C 0.111 3.889 19 C -0.485 4.485 20 H 0.100 0.900 21 C -0.183 4.183 22 N -0.450 5.450 23 Si 0.799 3.201 24 H -0.198 1.198 25 H -0.184 1.184 26 H -0.182 1.182 27 C -0.095 4.095 28 C -0.221 4.221 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.082 0.918 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.240 0.760 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.137 0.863 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.153 0.847 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.758 -17.149 -6.318 20.266 hybrid contribution 0.349 0.655 0.115 0.751 sum -8.409 -16.494 -6.203 19.525 Atomic orbital electron populations 1.23348 0.76479 1.05570 1.02297 1.86048 1.23448 1.26699 1.88634 1.19228 0.92634 0.84736 0.96364 1.20582 0.91856 0.98741 1.06370 1.20976 1.00621 0.90682 0.96988 1.19780 0.94408 0.93769 1.05123 1.19585 0.95579 0.85865 0.90403 0.91205 1.22093 1.02671 1.00621 0.95357 1.45958 1.14120 1.27911 1.49743 1.18418 0.86162 0.80640 0.79276 1.90652 1.17625 1.73863 1.63578 1.19845 0.94494 1.05950 1.08131 1.21045 0.92087 0.97686 0.96476 1.20795 0.99694 1.00031 1.05016 1.21180 0.93888 0.97495 0.98560 1.21297 0.94580 1.02150 1.01659 1.17862 0.93570 0.89678 0.87837 1.20087 0.93640 0.93898 1.40864 0.90049 1.26784 1.05167 0.94788 0.91583 1.69737 1.39496 0.99762 1.36010 0.85327 0.76767 0.78294 0.79726 1.19793 1.18388 1.18188 1.20893 0.93520 0.98071 0.97031 1.21416 1.01226 0.91456 1.07957 0.91594 0.86342 0.91843 0.83959 0.84254 0.91345 0.94551 0.90082 0.75974 0.85182 0.84952 0.86278 0.88261 0.90060 0.84662 0.83028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.23 10.50 -92.46 -0.97 -7.20 16 3 C 0.12 2.37 6.69 22.51 0.15 2.52 16 4 C -0.16 -3.28 9.99 22.37 0.22 -3.06 16 5 C -0.07 -1.66 9.66 22.26 0.22 -1.45 16 6 C -0.13 -3.18 4.96 -19.85 -0.10 -3.28 16 7 C 0.19 5.78 2.78 44.25 0.12 5.90 16 8 H 0.07 2.44 7.43 -2.39 -0.02 2.42 16 9 C -0.15 -4.20 9.46 71.98 0.68 -3.52 16 10 N -0.72 -25.11 4.97 -449.36 -2.24 -27.34 16 11 C 0.56 26.32 7.68 86.67 0.67 26.99 16 12 O -0.58 -31.45 13.25 -4.07 -0.05 -31.50 16 13 C -0.28 -13.71 5.92 -19.70 -0.12 -13.82 16 14 C -0.05 -2.17 9.52 22.50 0.21 -1.96 16 15 C -0.24 -9.21 10.03 22.41 0.22 -8.98 16 16 C -0.09 -4.04 10.01 22.26 0.22 -3.81 16 17 C -0.18 -9.24 8.62 22.72 0.20 -9.04 16 18 C 0.11 6.36 5.51 -21.11 -0.12 6.25 16 19 C -0.46 -26.54 7.68 23.41 0.18 -26.36 16 20 H 0.08 4.97 5.92 -2.91 -0.02 4.95 16 21 C 0.03 1.70 5.25 85.37 0.45 2.14 16 22 N -0.82 -44.60 11.14 21.88 0.24 -44.36 16 23 Si 0.98 42.24 29.57 68.60 2.03 44.27 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 27 C -0.08 -1.62 9.05 22.25 0.20 -1.42 16 28 C -0.20 -3.76 9.04 22.37 0.20 -3.55 16 29 H 0.07 0.54 7.66 -2.39 -0.02 0.53 16 30 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 32 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.14 2.78 8.03 -2.91 -0.02 2.76 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.40 11.64 4.91 -92.71 -0.46 11.18 16 38 H 0.13 4.00 6.44 -2.91 -0.02 3.98 16 39 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 40 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.10 5.40 6.59 -2.91 -0.02 5.38 16 42 H 0.29 14.15 8.29 -92.71 -0.77 13.39 16 43 H 0.14 2.48 6.89 -2.91 -0.02 2.46 16 44 H 0.15 1.99 6.30 -2.91 -0.02 1.97 16 Total: -1.00 -70.60 365.30 4.32 -66.28 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.58 Total: 35.03 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: 4.73 Total: -35.17 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -1.99 Total: -71.70 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -1.02 Total: -38.70 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -70.60 4.32 -66.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543480731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.171 kcal (2) G-P(sol) polarization free energy of solvation -70.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds