Wall clock time and date at job start Tue Mar 31 2020 14:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47328 * 2 1 4 4 C 1.50699 * 109.46990 * 179.75680 * 3 2 1 5 5 O 1.20824 * 120.00094 * 354.14461 * 4 3 2 6 6 O 1.34232 * 119.99693 * 174.13781 * 4 3 2 7 7 N 1.46900 * 109.46926 * 240.00058 * 2 1 3 8 8 C 1.46901 * 111.00428 * 65.16666 * 7 2 1 9 9 C 1.52993 * 109.47380 * 180.02562 * 8 7 2 10 10 O 1.42897 * 109.47162 * 64.99867 * 9 8 7 11 11 C 1.42904 * 113.99617 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46620 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00227 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99704 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99902 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99770 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47074 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46950 * 119.99898 * 16 14 12 19 19 H 1.48501 * 109.46883 * 239.99130 * 16 14 12 20 20 C 1.50701 * 109.47173 * 120.00265 * 2 1 3 21 21 C 1.38268 * 119.98310 * 269.72793 * 20 2 1 22 22 C 1.38230 * 120.04834 * 179.72459 * 21 20 2 23 23 C 1.38223 * 120.02297 * 0.54623 * 22 21 20 24 24 C 1.38438 * 119.97523 * 359.72468 * 23 22 21 25 25 F 1.35101 * 120.02664 * 180.02562 * 24 23 22 26 26 C 1.38178 * 119.98890 * 89.99658 * 20 2 1 27 27 H 1.08999 * 109.47387 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46662 * 299.99979 * 1 2 3 29 29 H 1.08997 * 109.46856 * 59.99981 * 1 2 3 30 30 H 1.08993 * 109.46860 * 299.75708 * 3 2 1 31 31 H 1.08995 * 109.46645 * 59.75582 * 3 2 1 32 32 H 0.96698 * 116.99393 * 180.02562 * 6 4 3 33 33 H 1.00905 * 111.00257 * 189.12160 * 7 2 1 34 34 H 1.08998 * 109.46902 * 300.00495 * 8 7 2 35 35 H 1.08998 * 109.46757 * 59.99601 * 8 7 2 36 36 H 1.09001 * 109.47131 * 185.00112 * 9 8 7 37 37 H 1.09006 * 109.47029 * 304.99850 * 9 8 7 38 38 H 1.08995 * 109.47476 * 299.99618 * 11 10 9 39 39 H 1.08991 * 109.47596 * 60.00163 * 11 10 9 40 40 H 0.97008 * 119.99639 * 180.02562 * 15 14 12 41 41 H 1.07999 * 119.97684 * 359.97246 * 21 20 2 42 42 H 1.07998 * 119.98889 * 180.27309 * 22 21 20 43 43 H 1.08000 * 120.01193 * 179.70495 * 23 22 21 44 44 H 1.07994 * 120.01222 * 0.02562 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0060 5 8 4.1507 0.4016 0.1167 6 8 4.2187 2.5987 -0.1117 7 7 2.0197 -0.6925 -1.1995 8 6 1.6521 0.0412 -2.4179 9 6 2.1775 -0.7094 -3.6432 10 8 1.5163 -1.9718 -3.7482 11 6 1.9369 -2.7570 -4.8656 12 6 1.1785 -4.0593 -4.8783 13 1 0.4487 -4.2667 -4.1098 14 6 1.4171 -4.9863 -5.8707 15 7 2.3062 -4.7339 -6.8063 16 14 0.4775 -6.6008 -5.8860 17 1 -0.4573 -6.6404 -4.7329 18 1 -0.2914 -6.7140 -7.1514 19 1 1.4349 -7.7316 -5.7858 20 6 2.0324 -0.7105 1.2304 21 6 2.2681 0.0019 2.3918 22 6 2.7234 -0.6494 3.5229 23 6 2.9544 -2.0118 3.4907 24 6 2.7241 -2.7250 2.3267 25 9 2.9490 -4.0568 2.2943 26 6 2.2625 -2.0725 1.1959 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6803 1.9550 -0.8921 31 1 1.6732 1.9575 0.8878 32 1 5.1843 2.5482 -0.1029 33 1 3.0171 -0.8373 -1.1516 34 1 0.5669 0.1224 -2.4797 35 1 2.0899 1.0389 -2.3872 36 1 1.9830 -0.1216 -4.5403 37 1 3.2508 -0.8689 -3.5390 38 1 1.7377 -2.2120 -5.7883 39 1 3.0050 -2.9590 -4.7864 40 1 2.4738 -5.3861 -7.5047 41 1 2.0925 1.0672 2.4165 42 1 2.9030 -0.0927 4.4308 43 1 3.3147 -2.5196 4.3731 44 1 2.0829 -2.6278 0.2873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604091831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:08 Heat of formation + Delta-G solvation = -175.627351 kcal Electronic energy + Delta-G solvation = -28256.069399 eV Core-core repulsion = 24087.161498 eV Total energy + Delta-G solvation = -4168.907902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.87518 -41.99430 -40.12845 -38.85651 -37.81826 -36.87476 -34.99434 -33.52742 -31.85249 -30.64976 -29.86674 -29.38505 -28.27765 -24.82013 -24.43688 -23.67673 -22.87287 -22.63996 -20.41720 -19.01362 -18.77472 -18.41288 -17.77237 -17.55030 -17.28523 -17.15257 -16.72288 -16.62060 -16.58083 -16.44183 -16.11583 -15.20883 -15.18597 -14.92195 -14.62474 -14.34890 -14.08053 -13.92842 -13.68881 -13.49363 -13.17962 -13.03293 -12.89157 -12.81478 -12.74957 -12.71919 -12.52263 -12.48935 -12.37803 -12.10773 -11.77041 -11.62496 -11.47053 -11.25581 -10.87574 -10.20484 -9.82933 -9.58378 -9.30327 -8.33184 -6.44814 0.22754 0.35158 1.23214 1.37867 1.39816 1.54679 2.12605 2.34082 2.66805 3.00569 3.05161 3.22593 3.28402 3.58307 3.63063 3.98419 4.10074 4.13803 4.16171 4.24548 4.29132 4.38077 4.45118 4.53890 4.56581 4.62236 4.72941 4.78428 4.83090 4.87935 5.02881 5.07289 5.15536 5.17831 5.26792 5.38221 5.39976 5.51011 5.54985 5.63533 5.96378 5.99626 6.17416 6.40217 6.56602 6.85338 7.00990 7.27430 8.79542 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011987 B = 0.003515 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.211197 B = 7963.182474 C = 9416.319584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.165 3.835 3 C -0.150 4.150 4 C 0.475 3.525 5 O -0.535 6.535 6 O -0.513 6.513 7 N -0.688 5.688 8 C 0.069 3.931 9 C 0.054 3.946 10 O -0.393 6.393 11 C 0.209 3.791 12 C -0.544 4.544 13 H 0.059 0.941 14 C 0.006 3.994 15 N -0.932 5.932 16 Si 0.982 3.018 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.273 1.273 20 C -0.029 4.029 21 C -0.131 4.131 22 C -0.085 4.085 23 C -0.163 4.163 24 C 0.067 3.933 25 F -0.159 7.159 26 C -0.148 4.148 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.150 0.850 32 H 0.425 0.575 33 H 0.344 0.656 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.025 0.975 38 H -0.014 1.014 39 H -0.023 1.023 40 H 0.270 0.730 41 H 0.157 0.843 42 H 0.167 0.833 43 H 0.148 0.852 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.063 19.502 21.704 29.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.074 3.926 3 C -0.188 4.188 4 C 0.319 3.681 5 O -0.425 6.425 6 O -0.327 6.327 7 N -0.322 5.322 8 C -0.059 4.059 9 C -0.023 4.023 10 O -0.312 6.312 11 C 0.134 3.866 12 C -0.582 4.582 13 H 0.078 0.922 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.805 3.195 17 H -0.190 1.190 18 H -0.192 1.192 19 H -0.198 1.198 20 C -0.029 4.029 21 C -0.149 4.149 22 C -0.102 4.102 23 C -0.182 4.182 24 C 0.048 3.952 25 F -0.138 7.138 26 C -0.168 4.168 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.286 0.714 33 H 0.165 0.835 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.004 0.996 39 H -0.005 1.005 40 H 0.079 0.921 41 H 0.174 0.826 42 H 0.184 0.816 43 H 0.166 0.834 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.896 18.635 21.646 28.576 hybrid contribution 1.718 -0.845 -0.884 2.109 sum 0.822 17.789 20.763 27.354 Atomic orbital electron populations 1.21867 0.90489 1.02864 1.03816 1.19767 0.96595 0.88677 0.87557 1.22415 0.86900 1.00240 1.09272 1.23729 0.92421 0.80826 0.71127 1.90772 1.71174 1.34339 1.46219 1.84490 1.28206 1.35407 1.84553 1.60508 1.21018 1.49934 1.00780 1.22060 1.02390 0.94114 0.87384 1.22590 0.95304 0.86175 0.98248 1.87910 1.64505 1.29551 1.49245 1.19780 0.93097 0.90072 0.83652 1.21407 1.23178 1.01794 1.11806 0.92238 1.25953 0.96258 1.02754 0.94250 1.70079 1.34678 1.37494 1.14858 0.85153 0.78332 0.77417 0.78612 1.18981 1.19243 1.19840 1.19513 0.96313 0.91963 0.95144 1.21387 1.00293 1.01255 0.91934 1.21311 0.96607 0.92740 0.99581 1.21372 1.03880 0.96116 0.96810 1.18136 1.03206 0.77260 0.96612 1.91448 1.92759 1.32329 1.97273 1.21023 1.01998 0.96397 0.97341 0.93305 0.88980 0.90643 0.85165 0.83245 0.71395 0.83453 0.88988 0.91392 0.92971 0.95703 0.99591 1.00506 0.92081 0.82573 0.81573 0.83408 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.36 71.98 0.60 -1.79 16 2 C 0.17 3.39 0.53 2.78 0.00 3.39 16 3 C -0.15 -1.93 3.86 29.85 0.12 -1.82 16 4 C 0.48 8.16 7.29 71.24 0.52 8.68 16 5 O -0.54 -13.63 13.34 21.97 0.29 -13.33 16 6 O -0.51 -6.18 13.42 -51.44 -0.69 -6.87 16 7 N -0.69 -20.14 4.88 -473.90 -2.31 -22.45 16 8 C 0.07 1.88 5.26 86.30 0.45 2.34 16 9 C 0.05 2.06 6.22 71.98 0.45 2.50 16 10 O -0.39 -19.99 10.27 -148.98 -1.53 -21.52 16 11 C 0.21 12.33 5.69 71.24 0.41 12.74 16 12 C -0.54 -33.94 9.43 25.60 0.24 -33.69 16 13 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 14 C 0.01 0.36 5.46 84.66 0.46 0.82 16 15 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 16 Si 0.98 46.30 29.54 68.60 2.03 48.32 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 C -0.03 -0.66 3.06 -19.87 -0.06 -0.72 16 21 C -0.13 -2.15 8.34 22.27 0.19 -1.96 16 22 C -0.08 -1.34 10.04 22.26 0.22 -1.12 16 23 C -0.16 -3.48 10.03 22.31 0.22 -3.26 16 24 C 0.07 1.96 7.30 22.37 0.16 2.12 16 25 F -0.16 -5.30 17.27 44.97 0.78 -4.53 16 26 C -0.15 -4.53 9.20 22.31 0.21 -4.33 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.22 6.53 -2.39 -0.02 1.20 16 30 H 0.13 1.32 6.32 -2.39 -0.02 1.30 16 31 H 0.15 0.87 6.52 -2.39 -0.02 0.85 16 32 H 0.42 2.44 9.10 -74.06 -0.67 1.77 16 33 H 0.34 11.40 6.33 -89.69 -0.57 10.83 16 34 H 0.09 2.41 6.44 -2.39 -0.02 2.39 16 35 H 0.07 1.37 6.16 -2.39 -0.01 1.35 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 38 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 40 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 41 H 0.16 1.40 6.15 -2.91 -0.02 1.38 16 42 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 43 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 44 H 0.12 4.27 7.40 -2.91 -0.02 4.25 16 Total: -1.00 -81.10 365.45 2.84 -78.26 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -0.19 Total: 15.79 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 4.19 Total: -16.11 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -2.03 Total: -80.02 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -1.93 Total: -41.72 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.78 Total: -4.53 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -81.10 2.84 -78.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604091831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.368 kcal (2) G-P(sol) polarization free energy of solvation -81.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds