Wall clock time and date at job start Tue Mar 31 2020 16:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47058 * 2 1 4 4 N 1.46502 * 109.47216 * 119.99632 * 2 1 3 5 5 C 1.34786 * 119.99896 * 275.00362 * 4 2 1 6 6 O 1.21282 * 119.99893 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99902 * 179.97438 * 5 4 2 8 8 H 1.09004 * 109.47056 * 59.99668 * 7 5 4 9 9 C 1.50695 * 109.47035 * 300.00004 * 7 5 4 10 10 H 1.07999 * 120.00342 * 324.88132 * 9 7 5 11 11 C 1.37879 * 120.00081 * 144.88244 * 9 7 5 12 12 N 1.31514 * 119.99847 * 5.18856 * 11 9 7 13 13 Si 1.86799 * 120.00260 * 185.19270 * 11 9 7 14 14 H 1.48504 * 109.46992 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47345 * 119.99748 * 13 11 9 16 16 H 1.48493 * 109.47493 * 239.99889 * 13 11 9 17 17 C 1.50698 * 109.47212 * 179.97438 * 7 5 4 18 18 C 1.38232 * 119.99688 * 66.01314 * 17 7 5 19 19 C 1.38242 * 119.99699 * 179.78810 * 18 17 7 20 20 C 1.38232 * 119.99919 * 0.44610 * 19 18 17 21 21 C 1.38236 * 120.00088 * 359.80431 * 20 19 18 22 22 C 1.38233 * 119.99983 * 246.28502 * 17 7 5 23 23 C 1.50698 * 109.47441 * 239.99699 * 2 1 3 24 24 C 1.38285 * 119.96962 * 279.97847 * 23 2 1 25 25 C 1.38248 * 120.10924 * 180.02562 * 24 23 2 26 26 C 1.38170 * 120.05492 * 359.97438 * 25 24 23 27 27 C 1.38713 * 119.94473 * 359.76846 * 26 25 24 28 28 O 1.35897 * 120.05817 * 180.25789 * 27 26 25 29 29 C 1.38120 * 119.97055 * 99.99732 * 23 2 1 30 30 H 1.09005 * 109.47422 * 300.00216 * 1 2 3 31 31 H 1.08994 * 109.47225 * 60.00067 * 1 2 3 32 32 H 1.09004 * 109.46776 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00360 * 95.00306 * 4 2 1 34 34 H 0.97000 * 120.00175 * 180.02562 * 12 11 9 35 35 H 1.07998 * 120.00102 * 359.97438 * 18 17 7 36 36 H 1.07995 * 119.99789 * 180.27220 * 19 18 17 37 37 H 1.07998 * 119.99806 * 179.83778 * 20 19 18 38 38 H 1.07997 * 120.00157 * 180.02562 * 21 20 19 39 39 H 1.08003 * 120.00441 * 359.97438 * 22 17 7 40 40 H 1.07997 * 119.94890 * 359.97438 * 24 23 2 41 41 H 1.07997 * 119.97507 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.02593 * 180.02562 * 26 25 24 43 43 H 0.96698 * 113.99759 * 270.25721 * 28 27 26 44 44 H 1.07997 * 120.02937 * 359.97438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8589 1.1588 2.4115 7 6 2.6488 -0.7285 3.5879 8 1 3.6479 -1.1211 3.3987 9 6 1.7185 -1.8647 3.9264 10 1 0.6570 -1.7629 3.7552 11 6 2.2224 -3.0343 4.4547 12 7 3.4990 -3.1222 4.7585 13 14 1.0921 -4.4940 4.7390 14 1 -0.2874 -4.1413 4.3172 15 1 1.5710 -5.6533 3.9439 16 1 1.0940 -4.8483 6.1810 17 6 2.7001 0.2400 4.7412 18 6 1.5302 0.7748 5.2473 19 6 1.5769 1.6599 6.3081 20 6 2.7943 2.0173 6.8569 21 6 3.9646 1.4865 6.3475 22 6 3.9176 0.5980 5.2895 23 6 2.0324 -0.7104 -1.2304 24 6 2.0670 -2.0924 -1.2643 25 6 2.5278 -2.7472 -2.3914 26 6 2.9546 -2.0217 -3.4871 27 6 2.9159 -0.6354 -3.4575 28 8 3.3301 0.0803 -4.5359 29 6 2.4582 0.0193 -2.3230 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1528 34 1 3.8537 -3.9452 5.1298 35 1 0.5794 0.4988 4.8158 36 1 0.6626 2.0743 6.7063 37 1 2.8310 2.7107 7.6840 38 1 4.9157 1.7654 6.7765 39 1 4.8320 0.1833 4.8916 40 1 1.7342 -2.6613 -0.4088 41 1 2.5535 -3.8266 -2.4157 42 1 3.3141 -2.5337 -4.3675 43 1 4.2717 0.3000 -4.5240 44 1 2.4309 1.0986 -2.2960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625101486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:57 Heat of formation + Delta-G solvation = -40.067244 kcal Electronic energy + Delta-G solvation = -26921.026658 eV Core-core repulsion = 23188.766309 eV Total energy + Delta-G solvation = -3732.260350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.08827 -39.10187 -37.90308 -36.94832 -34.70466 -33.66237 -31.43253 -31.01329 -29.92235 -29.82993 -28.96701 -27.22917 -24.22140 -23.56899 -22.75604 -21.61038 -21.35154 -20.32094 -19.27143 -18.17015 -16.89696 -16.56235 -16.13842 -16.00462 -15.64909 -15.20103 -14.88877 -14.55681 -14.15206 -14.05779 -14.01822 -13.64692 -13.35862 -12.99236 -12.71840 -12.47226 -12.30757 -12.23289 -12.06231 -11.83200 -11.66610 -11.59078 -11.43634 -11.11989 -11.05759 -10.99280 -10.45751 -10.40694 -10.25612 -10.00936 -9.42603 -8.97360 -8.81019 -8.71212 -8.57694 -8.38299 -7.93096 -7.59348 -6.29559 -4.35965 1.16509 1.24504 2.39274 2.41983 3.15365 3.25376 3.28316 3.49856 3.69148 3.99651 4.14571 4.25913 4.67435 4.83557 4.84797 5.05389 5.07384 5.25040 5.40079 5.46255 5.57587 5.73338 5.74527 5.80159 5.84013 5.89528 5.93941 6.08058 6.21596 6.29900 6.30552 6.35491 6.44677 6.49632 6.56800 6.61463 6.72977 6.86321 6.98561 7.15272 7.22263 7.38346 7.46010 7.50948 7.61295 7.75571 7.96212 8.07301 8.35355 8.68761 9.21706 9.30545 10.78736 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.003875 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.060194 B = 7224.419662 C = 8638.906395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.181 3.819 3 H 0.091 0.909 4 N -0.724 5.724 5 C 0.530 3.470 6 O -0.566 6.566 7 C 0.050 3.950 8 H 0.088 0.912 9 C -0.514 4.514 10 H 0.063 0.937 11 C 0.074 3.926 12 N -0.877 5.877 13 Si 0.896 3.104 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.282 1.282 17 C -0.008 4.008 18 C -0.085 4.085 19 C -0.135 4.135 20 C -0.149 4.149 21 C -0.132 4.132 22 C -0.118 4.118 23 C -0.065 4.065 24 C -0.118 4.118 25 C -0.100 4.100 26 C -0.150 4.150 27 C 0.102 3.898 28 O -0.501 6.501 29 C -0.135 4.135 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.404 0.596 34 H 0.266 0.734 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.389 0.611 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.455 2.156 -11.179 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 H 0.109 0.891 4 N -0.378 5.378 5 C 0.319 3.681 6 O -0.445 6.445 7 C 0.029 3.971 8 H 0.106 0.894 9 C -0.552 4.552 10 H 0.082 0.918 11 C -0.131 4.131 12 N -0.512 5.512 13 Si 0.723 3.277 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.208 1.208 17 C -0.009 4.009 18 C -0.103 4.103 19 C -0.153 4.153 20 C -0.167 4.167 21 C -0.150 4.150 22 C -0.136 4.136 23 C -0.066 4.066 24 C -0.136 4.136 25 C -0.118 4.118 26 C -0.169 4.169 27 C 0.058 3.942 28 O -0.311 6.311 29 C -0.154 4.154 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.240 0.760 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.244 0.756 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.193 2.826 -11.227 11.579 hybrid contribution 0.086 -1.351 0.380 1.406 sum -0.107 1.476 -10.847 10.948 Atomic orbital electron populations 1.22147 0.94612 1.02375 1.02244 1.19662 0.94055 0.96613 0.82107 0.89135 1.46087 1.68647 1.14401 1.08640 1.21667 0.75276 0.86386 0.84730 1.90580 1.51568 1.16898 1.85435 1.18119 1.00697 0.92237 0.86012 0.89414 1.20723 0.93311 0.96741 1.44377 0.91834 1.24971 0.95164 0.98724 0.94255 1.69928 1.12634 1.27405 1.41272 0.86463 0.80991 0.82048 0.78203 1.19462 1.20699 1.20796 1.20001 0.91965 0.92347 0.96584 1.20812 0.98362 0.95816 0.95334 1.20949 0.96924 0.99604 0.97809 1.20790 0.93045 1.01966 1.00939 1.20897 0.97290 0.98960 0.97876 1.20982 0.97684 0.97733 0.97230 1.19951 0.97598 0.93864 0.95164 1.21116 0.99891 0.93929 0.98696 1.21035 0.97947 1.00056 0.92728 1.21397 1.02848 0.93330 0.99300 1.18406 0.99565 0.89710 0.86553 1.84816 1.30465 1.74229 1.41613 1.21266 1.01395 1.00540 0.92241 0.91380 0.92315 0.92271 0.75964 0.92406 0.87168 0.87638 0.87755 0.87603 0.87071 0.85146 0.85435 0.85668 0.75558 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.46 37.16 0.35 -1.90 16 2 C 0.18 2.78 2.78 -69.08 -0.19 2.58 16 3 H 0.09 1.49 7.44 -51.93 -0.39 1.10 16 4 N -0.72 -12.97 4.93 -54.93 -0.27 -13.24 16 5 C 0.53 11.44 7.01 -10.98 -0.08 11.37 16 6 O -0.57 -13.37 15.08 5.56 0.08 -13.28 16 7 C 0.05 1.18 2.37 -94.08 -0.22 0.95 16 8 H 0.09 2.17 7.13 -51.93 -0.37 1.80 16 9 C -0.51 -12.54 7.47 -34.44 -0.26 -12.80 16 10 H 0.06 1.58 7.82 -52.49 -0.41 1.16 16 11 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 12 N -0.88 -22.75 12.84 55.43 0.71 -22.04 16 13 Si 0.90 19.48 29.54 -169.99 -5.02 14.46 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 15 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 C -0.01 -0.19 4.30 -104.63 -0.45 -0.64 16 18 C -0.09 -1.91 8.31 -39.58 -0.33 -2.24 16 19 C -0.13 -2.67 10.05 -39.58 -0.40 -3.07 16 20 C -0.15 -2.79 10.05 -39.58 -0.40 -3.19 16 21 C -0.13 -2.57 10.05 -39.58 -0.40 -2.96 16 22 C -0.12 -2.59 9.67 -39.58 -0.38 -2.97 16 23 C -0.07 -0.87 4.95 -104.65 -0.52 -1.39 16 24 C -0.12 -1.49 9.05 -39.56 -0.36 -1.84 16 25 C -0.10 -1.10 10.04 -39.60 -0.40 -1.50 16 26 C -0.15 -1.63 9.99 -39.43 -0.39 -2.02 16 27 C 0.10 1.18 6.71 -39.21 -0.26 0.92 16 28 O -0.50 -5.10 13.50 -19.42 -0.26 -5.36 16 29 C -0.14 -1.69 9.61 -39.43 -0.38 -2.06 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.40 6.95 6.75 -40.82 -0.28 6.68 16 34 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 35 H 0.11 2.49 7.90 -52.49 -0.41 2.08 16 36 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.11 2.35 7.96 -52.48 -0.42 1.93 16 40 H 0.13 1.61 6.91 -52.49 -0.36 1.25 16 41 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.39 2.12 9.06 45.56 0.41 2.54 16 44 H 0.13 1.48 8.04 -52.49 -0.42 1.06 16 LS Contribution 376.53 15.07 5.67 5.67 Total: -1.00 -29.76 376.53 -9.41 -39.17 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -5.16 Total: 15.65 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -5.16 Total: -21.02 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.44 Total: -35.28 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.18 Total: -18.64 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.76 -9.41 -39.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625101486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.899 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds