Wall clock time and date at job start Tue Mar 31 2020 16:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47502 * 2 1 4 4 O 1.42895 * 109.47381 * 120.00239 * 2 1 3 5 5 C 1.35964 * 117.00430 * 155.01750 * 4 2 1 6 6 C 1.38734 * 119.97860 * 5.19346 * 5 4 2 7 7 C 1.38078 * 120.01344 * 180.02562 * 6 5 4 8 8 C 1.38883 * 119.98597 * 359.97438 * 7 6 5 9 9 N 1.39982 * 120.01881 * 180.02562 * 8 7 6 10 10 C 1.34782 * 119.99910 * 153.93742 * 9 8 7 11 11 O 1.21629 * 120.00008 * 354.10509 * 10 9 8 12 12 C 1.47387 * 119.99621 * 174.10645 * 10 9 8 13 13 C 1.39251 * 120.28532 * 4.93281 * 12 10 9 14 14 C 1.38199 * 120.08592 * 179.97438 * 13 12 10 15 15 C 1.38841 * 120.68516 * 0.02562 * 14 13 12 16 16 C 1.37584 * 120.57050 * 0.02562 * 15 14 13 17 17 C 1.40707 * 119.88639 * 359.97438 * 16 15 14 18 18 C 1.40871 * 120.33004 * 180.02562 * 17 16 15 19 19 H 1.08007 * 120.00129 * 144.56358 * 18 17 16 20 20 C 1.40275 * 120.00185 * 324.56320 * 18 17 16 21 21 N 1.30630 * 120.00090 * 4.68870 * 20 18 17 22 22 Si 1.86795 * 120.00197 * 184.68295 * 20 18 17 23 23 H 1.48502 * 109.47232 * 90.00341 * 22 20 18 24 24 H 1.48500 * 109.47473 * 210.00297 * 22 20 18 25 25 H 1.48503 * 109.47150 * 330.00267 * 22 20 18 26 26 C 1.38888 * 119.96377 * 0.26480 * 8 7 6 27 27 C 1.38073 * 119.97723 * 359.47854 * 26 8 7 28 28 H 1.08997 * 109.46772 * 300.00112 * 1 2 3 29 29 H 1.09009 * 109.46787 * 59.99845 * 1 2 3 30 30 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47274 * 240.00349 * 2 1 3 32 32 H 1.09004 * 109.46571 * 59.99919 * 3 2 1 33 33 H 1.08999 * 109.47228 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46798 * 300.00483 * 3 2 1 35 35 H 1.07992 * 119.99337 * 0.02562 * 6 5 4 36 36 H 1.08002 * 120.00349 * 179.97438 * 7 6 5 37 37 H 0.97003 * 119.99881 * 333.92895 * 9 8 7 38 38 H 1.07997 * 119.95937 * 0.03032 * 13 12 10 39 39 H 1.08003 * 119.65847 * 180.28435 * 14 13 12 40 40 H 1.07997 * 119.71250 * 179.97438 * 15 14 13 41 41 H 1.07999 * 120.05244 * 179.97438 * 16 15 14 42 42 H 0.96994 * 120.00432 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.01159 * 179.73198 * 26 8 7 44 44 H 1.08004 * 119.98905 * 180.22536 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2474 -1.2247 1.0979 6 6 4.0324 -1.0266 -0.0287 7 6 5.2927 -1.5863 -0.0996 8 6 5.7746 -2.3473 0.9575 9 7 7.0523 -2.9147 0.8866 10 6 7.7338 -3.1840 2.0179 11 8 7.2866 -2.8371 3.0944 12 6 9.0210 -3.8987 1.9502 13 6 9.5885 -4.2081 0.7168 14 6 10.7959 -4.8779 0.6582 15 6 11.4566 -5.2506 1.8211 16 6 10.9204 -4.9599 3.0544 17 6 9.6923 -4.2787 3.1421 18 6 9.1350 -3.9758 4.3999 19 1 8.5904 -3.0540 4.5414 20 6 9.2875 -4.8715 5.4686 21 7 10.0226 -5.9416 5.3243 22 14 8.4394 -4.5340 7.0984 23 1 7.0915 -5.1571 7.0934 24 1 9.2463 -5.1087 8.2047 25 1 8.3062 -3.0678 7.2928 26 6 4.9861 -2.5493 2.0829 27 6 3.7282 -1.9845 2.1544 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.6577 -0.4345 -0.8505 36 1 5.9035 -1.4323 -0.9769 37 1 7.4472 -3.1141 0.0234 38 1 9.0850 -3.9233 -0.1951 39 1 11.2321 -5.1103 -0.3021 40 1 12.3991 -5.7739 1.7570 41 1 11.4412 -5.2541 3.9536 42 1 10.1278 -6.5612 6.0631 43 1 5.3584 -3.1446 2.9035 44 1 3.1164 -2.1385 3.0310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625908683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:48 Heat of formation + Delta-G solvation = -26.503969 kcal Electronic energy + Delta-G solvation = -26426.153182 eV Core-core repulsion = 22694.480980 eV Total energy + Delta-G solvation = -3731.672202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.34792 -39.36158 -37.63872 -36.51234 -34.23819 -33.64960 -32.92843 -30.75180 -30.19725 -29.69082 -28.08231 -27.40484 -25.49133 -23.57669 -22.77696 -21.88408 -21.12383 -20.60637 -19.33072 -18.25840 -17.81529 -16.84503 -16.36080 -15.62132 -15.40387 -15.27604 -14.69559 -14.37191 -14.23793 -14.02522 -13.73269 -13.53319 -13.23620 -13.09484 -12.83257 -12.75339 -12.58083 -12.46704 -12.29996 -12.15682 -11.98844 -11.62310 -11.34507 -11.17033 -11.08494 -10.88227 -10.71430 -10.62845 -10.49833 -10.09388 -9.80632 -9.50262 -9.34695 -8.80978 -8.36042 -7.69895 -7.41271 -7.24803 -6.80659 -4.49522 1.55556 1.62900 2.28638 2.77200 3.08191 3.16505 3.21135 3.22358 3.75751 3.86683 3.94494 4.22974 4.55718 4.64202 4.68983 4.82674 4.99338 5.05984 5.26663 5.31886 5.47555 5.50488 5.53757 5.55293 5.59752 5.79673 5.86656 5.90672 5.94705 6.01573 6.21657 6.24751 6.27920 6.47994 6.50362 6.72451 6.85780 6.92033 7.05043 7.16123 7.32104 7.41782 7.54758 7.61450 7.85720 7.92765 8.10970 8.21099 8.61908 8.76796 8.82482 9.20349 10.08844 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.003061 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.846874 B = 9145.736371 C =10690.461030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.077 3.923 3 C -0.181 4.181 4 O -0.314 6.314 5 C 0.095 3.905 6 C -0.189 4.189 7 C -0.128 4.128 8 C 0.139 3.861 9 N -0.685 5.685 10 C 0.562 3.438 11 O -0.519 6.519 12 C -0.263 4.263 13 C -0.060 4.060 14 C -0.240 4.240 15 C -0.098 4.098 16 C -0.145 4.145 17 C 0.140 3.860 18 C -0.416 4.416 19 H 0.110 0.890 20 C 0.066 3.934 21 N -0.795 5.795 22 Si 0.923 3.077 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.258 1.258 26 C -0.094 4.094 27 C -0.128 4.128 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.402 0.598 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.132 0.868 42 H 0.282 0.718 43 H 0.155 0.845 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.661 7.564 -9.940 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.021 3.979 3 C -0.238 4.238 4 O -0.229 6.229 5 C 0.049 3.951 6 C -0.208 4.208 7 C -0.149 4.149 8 C 0.043 3.957 9 N -0.330 5.330 10 C 0.358 3.642 11 O -0.397 6.397 12 C -0.268 4.268 13 C -0.079 4.079 14 C -0.259 4.259 15 C -0.117 4.117 16 C -0.164 4.164 17 C 0.136 3.864 18 C -0.444 4.444 19 H 0.128 0.872 20 C -0.152 4.152 21 N -0.421 5.421 22 Si 0.748 3.252 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.182 1.182 26 C -0.114 4.114 27 C -0.148 4.148 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.238 0.762 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.150 0.850 42 H 0.093 0.907 43 H 0.172 0.828 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.957 7.559 -8.835 16.678 hybrid contribution 0.025 -0.090 -0.194 0.215 sum -11.932 7.469 -9.029 16.723 Atomic orbital electron populations 1.21844 0.92819 1.03047 1.02805 1.22347 0.95110 0.92584 0.87895 1.22389 1.02411 0.96164 1.02830 1.86105 1.29819 1.68691 1.38274 1.18886 0.84909 0.96177 0.95089 1.20912 0.95688 1.05607 0.98569 1.20581 0.96447 0.98708 0.99139 1.17802 0.85878 0.96210 0.95769 1.43760 1.15144 1.63449 1.10616 1.18576 0.84808 0.78408 0.82399 1.90631 1.69672 1.51594 1.27811 1.19370 0.96879 1.16154 0.94357 1.20633 0.95351 0.97105 0.94813 1.20325 0.98785 1.10082 0.96747 1.20887 0.98361 0.99054 0.93399 1.21695 0.95946 1.02183 0.96604 1.17529 0.89502 0.87935 0.91436 1.20351 1.26129 1.05292 0.92601 0.87200 1.26204 0.93772 0.94341 1.00899 1.69683 1.29727 1.09386 1.33268 0.86046 0.79630 0.80287 0.79269 1.19245 1.20391 1.18163 1.21382 0.91639 0.99577 0.98834 1.20356 0.96418 0.99828 0.98150 0.91560 0.90789 0.91714 0.91077 0.91518 0.91669 0.91328 0.85609 0.85940 0.76175 0.89262 0.88999 0.88950 0.85032 0.90683 0.82769 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.56 37.16 0.36 -0.75 16 2 C 0.08 0.74 2.85 -26.73 -0.08 0.66 16 3 C -0.18 -1.53 9.17 37.16 0.34 -1.19 16 4 O -0.31 -4.16 9.80 -19.63 -0.19 -4.36 16 5 C 0.09 1.38 6.60 -39.21 -0.26 1.12 16 6 C -0.19 -2.48 8.24 -39.46 -0.33 -2.81 16 7 C -0.13 -1.80 9.94 -39.40 -0.39 -2.19 16 8 C 0.14 2.40 6.41 -83.66 -0.54 1.86 16 9 N -0.68 -12.35 5.31 -10.81 -0.06 -12.41 16 10 C 0.56 12.64 7.51 -12.53 -0.09 12.55 16 11 O -0.52 -12.98 10.78 5.25 0.06 -12.92 16 12 C -0.26 -6.22 5.92 -104.37 -0.62 -6.84 16 13 C -0.06 -1.24 9.53 -39.22 -0.37 -1.61 16 14 C -0.24 -4.95 10.03 -39.37 -0.39 -5.35 16 15 C -0.10 -2.16 10.01 -39.60 -0.40 -2.56 16 16 C -0.15 -3.61 8.66 -38.89 -0.34 -3.95 16 17 C 0.14 3.67 5.57 -106.54 -0.59 3.07 16 18 C -0.42 -11.11 7.79 -37.82 -0.29 -11.41 16 19 H 0.11 3.04 5.71 -52.48 -0.30 2.74 16 20 C 0.07 1.65 5.43 -17.30 -0.09 1.56 16 21 N -0.80 -20.01 10.64 55.56 0.59 -19.42 16 22 Si 0.92 19.52 29.56 -169.99 -5.03 14.49 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 26 C -0.09 -1.71 8.69 -39.40 -0.34 -2.05 16 27 C -0.13 -2.06 9.98 -39.46 -0.39 -2.45 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.63 6.29 -51.93 -0.33 0.30 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.62 6.93 -51.93 -0.36 0.26 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.13 1.32 5.43 -52.49 -0.28 1.03 16 36 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.40 6.08 6.84 -40.82 -0.28 5.80 16 38 H 0.09 1.50 6.41 -52.49 -0.34 1.16 16 39 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.13 3.37 6.19 -52.49 -0.32 3.04 16 42 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 43 H 0.15 3.17 5.90 -52.49 -0.31 2.86 16 44 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 360.24 15.07 5.43 5.43 Total: -1.00 -28.97 360.24 -9.48 -38.45 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -5.46 Total: 13.08 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -4.82 Total: -22.33 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.53 Total: -31.83 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.14 Total: -17.28 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.97 -9.48 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625908683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.947 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds