Wall clock time and date at job start Tue Mar 31 2020 16:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47502 * 2 1 4 4 O 1.42895 * 109.47381 * 120.00239 * 2 1 3 5 5 C 1.35964 * 117.00430 * 155.01750 * 4 2 1 6 6 C 1.38734 * 119.97860 * 5.19346 * 5 4 2 7 7 C 1.38078 * 120.01344 * 180.02562 * 6 5 4 8 8 C 1.38883 * 119.98597 * 359.97438 * 7 6 5 9 9 N 1.39982 * 120.01881 * 180.02562 * 8 7 6 10 10 C 1.34782 * 119.99910 * 153.93742 * 9 8 7 11 11 O 1.21629 * 120.00008 * 354.10509 * 10 9 8 12 12 C 1.47387 * 119.99621 * 174.10645 * 10 9 8 13 13 C 1.39251 * 120.28532 * 4.93281 * 12 10 9 14 14 C 1.38199 * 120.08592 * 179.97438 * 13 12 10 15 15 C 1.38841 * 120.68516 * 0.02562 * 14 13 12 16 16 C 1.37584 * 120.57050 * 0.02562 * 15 14 13 17 17 C 1.40707 * 119.88639 * 359.97438 * 16 15 14 18 18 C 1.40871 * 120.33004 * 180.02562 * 17 16 15 19 19 H 1.08007 * 120.00129 * 144.56358 * 18 17 16 20 20 C 1.40275 * 120.00185 * 324.56320 * 18 17 16 21 21 N 1.30630 * 120.00090 * 4.68870 * 20 18 17 22 22 Si 1.86795 * 120.00197 * 184.68295 * 20 18 17 23 23 H 1.48502 * 109.47232 * 90.00341 * 22 20 18 24 24 H 1.48500 * 109.47473 * 210.00297 * 22 20 18 25 25 H 1.48503 * 109.47150 * 330.00267 * 22 20 18 26 26 C 1.38888 * 119.96377 * 0.26480 * 8 7 6 27 27 C 1.38073 * 119.97723 * 359.47854 * 26 8 7 28 28 H 1.08997 * 109.46772 * 300.00112 * 1 2 3 29 29 H 1.09009 * 109.46787 * 59.99845 * 1 2 3 30 30 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47274 * 240.00349 * 2 1 3 32 32 H 1.09004 * 109.46571 * 59.99919 * 3 2 1 33 33 H 1.08999 * 109.47228 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46798 * 300.00483 * 3 2 1 35 35 H 1.07992 * 119.99337 * 0.02562 * 6 5 4 36 36 H 1.08002 * 120.00349 * 179.97438 * 7 6 5 37 37 H 0.97003 * 119.99881 * 333.92895 * 9 8 7 38 38 H 1.07997 * 119.95937 * 0.03032 * 13 12 10 39 39 H 1.08003 * 119.65847 * 180.28435 * 14 13 12 40 40 H 1.07997 * 119.71250 * 179.97438 * 15 14 13 41 41 H 1.07999 * 120.05244 * 179.97438 * 16 15 14 42 42 H 0.96994 * 120.00432 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.01159 * 179.73198 * 26 8 7 44 44 H 1.08004 * 119.98905 * 180.22536 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2474 -1.2247 1.0979 6 6 4.0324 -1.0266 -0.0287 7 6 5.2927 -1.5863 -0.0996 8 6 5.7746 -2.3473 0.9575 9 7 7.0523 -2.9147 0.8866 10 6 7.7338 -3.1840 2.0179 11 8 7.2866 -2.8371 3.0944 12 6 9.0210 -3.8987 1.9502 13 6 9.5885 -4.2081 0.7168 14 6 10.7959 -4.8779 0.6582 15 6 11.4566 -5.2506 1.8211 16 6 10.9204 -4.9599 3.0544 17 6 9.6923 -4.2787 3.1421 18 6 9.1350 -3.9758 4.3999 19 1 8.5904 -3.0540 4.5414 20 6 9.2875 -4.8715 5.4686 21 7 10.0226 -5.9416 5.3243 22 14 8.4394 -4.5340 7.0984 23 1 7.0915 -5.1571 7.0934 24 1 9.2463 -5.1087 8.2047 25 1 8.3062 -3.0678 7.2928 26 6 4.9861 -2.5493 2.0829 27 6 3.7282 -1.9845 2.1544 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.6577 -0.4345 -0.8505 36 1 5.9035 -1.4323 -0.9769 37 1 7.4472 -3.1141 0.0234 38 1 9.0850 -3.9233 -0.1951 39 1 11.2321 -5.1103 -0.3021 40 1 12.3991 -5.7739 1.7570 41 1 11.4412 -5.2541 3.9536 42 1 10.1278 -6.5612 6.0631 43 1 5.3584 -3.1446 2.9035 44 1 3.1164 -2.1385 3.0310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625908683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:46 Heat of formation + Delta-G solvation = -41.663085 kcal Electronic energy + Delta-G solvation = -26426.810531 eV Core-core repulsion = 22694.480980 eV Total energy + Delta-G solvation = -3732.329550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.62789 -40.73536 -39.11988 -38.03233 -35.84761 -35.22793 -33.89026 -32.03958 -31.81555 -31.43991 -29.36961 -28.09498 -27.29787 -24.86433 -24.17392 -23.24378 -22.62460 -21.92112 -20.84482 -19.60569 -19.20812 -18.41099 -17.83881 -17.10851 -16.72491 -16.32623 -16.01186 -15.96686 -15.89594 -15.32697 -15.01537 -14.82710 -14.59341 -14.51225 -14.19886 -14.12134 -13.82889 -13.52569 -13.43778 -13.12772 -13.09008 -12.93255 -12.90542 -12.78428 -12.46432 -12.33593 -12.18244 -11.86614 -11.80286 -11.56928 -11.52736 -11.21537 -10.79616 -10.21922 -9.92191 -9.46352 -9.22067 -8.64405 -8.54259 -6.41833 0.24469 0.36603 0.63787 1.01900 1.32159 1.45417 1.48497 2.18840 2.22027 2.27300 2.37920 2.75149 2.90410 3.69595 3.81663 3.89141 3.95510 4.03316 4.17547 4.22319 4.33101 4.35384 4.46467 4.60074 4.63813 4.71262 4.76278 4.85196 4.87972 4.90773 5.04735 5.09737 5.14698 5.22568 5.25658 5.29097 5.32616 5.36844 5.43659 5.57318 5.62744 5.81055 5.96251 6.10292 6.11525 6.32938 6.55724 6.62155 6.75787 6.90571 6.97187 7.53649 8.27402 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.003061 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.846874 B = 9145.736371 C =10690.461030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 C -0.179 4.179 4 O -0.328 6.328 5 C 0.102 3.898 6 C -0.179 4.179 7 C -0.109 4.109 8 C 0.110 3.890 9 N -0.667 5.667 10 C 0.557 3.443 11 O -0.554 6.554 12 C -0.278 4.278 13 C -0.057 4.057 14 C -0.231 4.231 15 C -0.094 4.094 16 C -0.177 4.177 17 C 0.109 3.891 18 C -0.456 4.456 19 H 0.086 0.914 20 C 0.030 3.970 21 N -0.822 5.822 22 Si 0.980 3.020 23 H -0.271 1.271 24 H -0.257 1.257 25 H -0.267 1.267 26 C -0.116 4.116 27 C -0.145 4.145 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.418 0.582 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.288 0.712 43 H 0.118 0.882 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 8.682 -13.868 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 C -0.236 4.236 4 O -0.244 6.244 5 C 0.057 3.943 6 C -0.198 4.198 7 C -0.129 4.129 8 C 0.015 3.985 9 N -0.313 5.313 10 C 0.352 3.648 11 O -0.434 6.434 12 C -0.283 4.283 13 C -0.075 4.075 14 C -0.250 4.250 15 C -0.113 4.113 16 C -0.196 4.196 17 C 0.105 3.895 18 C -0.485 4.485 19 H 0.104 0.896 20 C -0.185 4.185 21 N -0.449 5.449 22 Si 0.802 3.198 23 H -0.196 1.196 24 H -0.181 1.181 25 H -0.191 1.191 26 C -0.137 4.137 27 C -0.164 4.164 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.180 0.820 36 H 0.177 0.823 37 H 0.257 0.743 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.135 0.865 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.988 8.681 -12.812 20.204 hybrid contribution 0.207 -0.333 0.750 0.846 sum -12.781 8.348 -12.062 19.456 Atomic orbital electron populations 1.21883 0.91289 1.03179 1.03946 1.22758 0.96381 0.92953 0.86946 1.22391 1.01761 0.95533 1.03892 1.86116 1.28970 1.68695 1.40572 1.18937 0.85630 0.95013 0.94752 1.21295 0.94903 1.04797 0.98788 1.20918 0.96807 0.96434 0.98766 1.17982 0.85450 0.98257 0.96843 1.43366 1.15227 1.62800 1.09885 1.18582 0.84852 0.78243 0.83087 1.90628 1.70327 1.52931 1.29560 1.19737 0.97508 1.15945 0.95070 1.21084 0.95407 0.95837 0.95180 1.20843 0.98222 1.08073 0.97896 1.21260 0.99227 0.97957 0.92832 1.21612 0.96193 1.04367 0.97462 1.17903 0.90324 0.88952 0.92325 1.20272 1.28153 1.05682 0.94371 0.89599 1.26810 0.94277 0.94049 1.03314 1.69717 1.30861 1.10011 1.34266 0.85232 0.78657 0.79457 0.76490 1.19604 1.18057 1.19103 1.21138 0.93088 1.00658 0.98783 1.20353 0.95950 1.00815 0.99286 0.92023 0.88056 0.92118 0.89718 0.92261 0.92592 0.88565 0.82006 0.82337 0.74332 0.84690 0.84775 0.86206 0.86860 0.90064 0.86462 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.56 71.98 0.69 -1.07 16 2 C 0.06 1.04 2.85 30.60 0.09 1.13 16 3 C -0.18 -2.44 9.17 71.98 0.66 -1.78 16 4 O -0.33 -8.15 9.80 -93.15 -0.91 -9.07 16 5 C 0.10 2.83 6.60 22.51 0.15 2.98 16 6 C -0.18 -4.11 8.24 22.35 0.18 -3.93 16 7 C -0.11 -2.72 9.94 22.39 0.22 -2.50 16 8 C 0.11 3.71 6.41 38.15 0.24 3.95 16 9 N -0.67 -23.57 5.31 -306.36 -1.63 -25.20 16 10 C 0.56 25.86 7.51 86.65 0.65 26.51 16 11 O -0.55 -29.71 10.78 -4.12 -0.04 -29.76 16 12 C -0.28 -13.35 5.92 -19.70 -0.12 -13.46 16 13 C -0.06 -2.19 9.53 22.50 0.21 -1.98 16 14 C -0.23 -8.78 10.03 22.40 0.22 -8.55 16 15 C -0.09 -4.03 10.01 22.26 0.22 -3.81 16 16 C -0.18 -9.09 8.66 22.72 0.20 -8.89 16 17 C 0.11 5.96 5.57 -21.11 -0.12 5.84 16 18 C -0.46 -26.20 7.79 23.41 0.18 -26.02 16 19 H 0.09 5.21 5.71 -2.91 -0.02 5.19 16 20 C 0.03 1.60 5.43 85.37 0.46 2.07 16 21 N -0.82 -43.59 10.64 21.88 0.23 -43.36 16 22 Si 0.98 42.51 29.56 68.60 2.03 44.54 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 C -0.12 -4.42 8.69 22.39 0.19 -4.23 16 27 C -0.14 -4.77 9.98 22.35 0.22 -4.55 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.13 6.29 -2.39 -0.02 1.12 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.88 6.93 -2.39 -0.02 0.86 16 34 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.16 2.56 5.43 -2.91 -0.02 2.54 16 36 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.42 11.49 6.84 -92.71 -0.63 10.86 16 38 H 0.14 3.91 6.41 -2.91 -0.02 3.89 16 39 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 40 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 41 H 0.11 6.13 6.19 -2.91 -0.02 6.11 16 42 H 0.29 13.84 8.29 -92.71 -0.77 13.07 16 43 H 0.12 5.32 5.90 -2.91 -0.02 5.30 16 44 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -69.30 360.24 4.66 -64.64 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: 0.41 Total: 36.50 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 4.57 Total: -38.29 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -1.40 Total: -68.56 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.96 Total: -38.83 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -69.30 4.66 -64.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625908683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.979 kcal (2) G-P(sol) polarization free energy of solvation -69.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds