Wall clock time and date at job start Tue Mar 31 2020 14:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39725 * 119.59283 * 29.10889 * 3 2 1 5 5 C 1.37971 * 119.20494 * 179.97438 * 4 3 2 6 6 C 1.40242 * 118.39678 * 359.97438 * 5 4 3 7 7 C 1.47671 * 120.43763 * 180.02562 * 6 5 4 8 8 O 1.21575 * 119.99630 * 172.32126 * 7 6 5 9 9 N 1.34776 * 120.00460 * 352.31993 * 7 6 5 10 10 C 1.47168 * 125.59086 * 5.07393 * 9 7 6 11 11 C 1.54659 * 107.35236 * 180.90773 * 10 9 7 12 12 C 1.53314 * 102.71384 * 20.50850 * 11 10 9 13 13 C 1.53297 * 112.22039 * 204.98481 * 12 11 10 14 14 C 1.54664 * 102.71886 * 271.82730 * 13 12 11 15 15 N 1.47161 * 107.35058 * 339.48769 * 14 13 12 16 16 C 1.36933 * 125.59294 * 179.13536 * 15 14 13 17 17 H 1.08006 * 120.00132 * 179.97438 * 16 15 14 18 18 C 1.38808 * 120.00313 * 359.97438 * 16 15 14 19 19 N 1.31623 * 119.99879 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00167 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47303 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46985 * 119.99991 * 20 18 16 23 23 H 1.48499 * 109.47283 * 239.99584 * 20 18 16 24 24 C 1.47788 * 108.81379 * 359.09870 * 15 14 13 25 25 C 1.47789 * 125.59642 * 184.77320 * 9 7 6 26 26 C 1.39659 * 119.11910 * 0.06065 * 6 5 4 27 27 N 1.31477 * 120.71128 * 359.93640 * 26 6 5 28 28 H 4.51265 * 14.17633 * 0.02562 * 4 2 1 29 29 H 1.08006 * 120.39815 * 359.72282 * 4 3 2 30 30 H 1.07998 * 120.80296 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.86851 * 300.34933 * 10 9 7 32 32 H 1.09003 * 109.87115 * 61.46595 * 10 9 7 33 33 H 1.09000 * 110.76091 * 138.81208 * 11 10 9 34 34 H 1.08998 * 110.76112 * 262.01768 * 11 10 9 35 35 H 1.09005 * 110.76215 * 30.13335 * 13 12 11 36 36 H 1.09002 * 110.76073 * 153.33418 * 13 12 11 37 37 H 1.08999 * 109.86978 * 98.93344 * 14 13 12 38 38 H 1.09006 * 109.86571 * 219.90921 * 14 13 12 39 39 H 0.97001 * 120.00185 * 179.97438 * 19 18 16 40 40 H 1.08993 * 110.40621 * 263.37666 * 24 15 14 41 41 H 1.09006 * 110.40072 * 140.95595 * 24 15 14 42 42 H 1.09000 * 110.39615 * 276.61579 * 25 9 7 43 43 H 1.08997 * 110.40202 * 39.02961 * 25 9 7 44 44 H 1.08002 * 119.64248 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2965 -1.0606 -0.5911 5 6 4.6762 -1.0515 -0.5870 6 6 5.3343 0.0311 0.0144 7 6 6.8096 0.0870 0.0438 8 8 7.3721 1.0894 0.4397 9 7 7.5326 -0.9732 -0.3682 10 6 6.9865 -2.2020 -0.9664 11 6 8.1792 -3.1424 -1.2581 12 6 9.2722 -2.5990 -0.3305 13 6 10.6804 -2.9289 -0.8384 14 6 10.9534 -4.3150 -0.2088 15 7 10.0384 -4.4659 0.9338 16 6 9.9535 -5.5642 1.7472 17 1 9.2466 -5.5783 2.5636 18 6 10.7760 -6.6596 1.5225 19 7 11.6371 -6.6428 0.5272 20 14 10.6606 -8.1575 2.6325 21 1 9.6219 -7.9273 3.6684 22 1 10.2956 -9.3473 1.8221 23 1 11.9723 -8.3893 3.2890 24 6 9.2267 -3.2374 1.0599 25 6 9.0043 -1.0901 -0.2991 26 6 4.5758 1.0552 0.5857 27 7 3.2620 1.0110 0.5620 28 1 -1.0500 -0.0006 -0.0009 29 1 2.7567 -1.8802 -1.0421 30 1 5.2358 -1.8587 -1.0361 31 1 6.2997 -2.6803 -0.2682 32 1 6.4675 -1.9631 -1.8947 33 1 7.9310 -4.1722 -1.0011 34 1 8.4829 -3.0688 -2.3024 35 1 10.6944 -2.9893 -1.9267 36 1 11.4013 -2.1918 -0.4845 37 1 10.7632 -5.0988 -0.9419 38 1 11.9874 -4.3698 0.1321 39 1 12.2122 -7.4081 0.3704 40 1 9.6639 -2.5673 1.8001 41 1 8.2004 -3.4861 1.3303 42 1 9.4648 -0.6017 -1.1579 43 1 9.3766 -0.6580 0.6297 44 1 5.0739 1.8927 1.0515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041793607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:46 Heat of formation + Delta-G solvation = 115.621083 kcal Electronic energy + Delta-G solvation = -26893.822377 eV Core-core repulsion = 23200.605931 eV Total energy + Delta-G solvation = -3693.216446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.13721 -39.89281 -38.33965 -35.93708 -34.30277 -33.35583 -32.45624 -31.11028 -30.40443 -29.59117 -28.43195 -26.11924 -25.33476 -24.08587 -23.44658 -22.80669 -20.40950 -20.09391 -19.74291 -18.99216 -17.43160 -16.90939 -16.64771 -16.46834 -15.88290 -15.62891 -14.88498 -14.68566 -14.56032 -14.49457 -14.00739 -13.99128 -13.61948 -13.30866 -13.05985 -12.66938 -12.51325 -12.30036 -11.98631 -11.61796 -11.43715 -11.35238 -11.24232 -11.18098 -10.91438 -10.82900 -10.37011 -10.32703 -10.21902 -10.07025 -9.98533 -9.83603 -9.71861 -9.67861 -9.21168 -8.70204 -8.64093 -6.87692 -5.75700 -3.09039 0.02659 0.86392 2.21419 2.23720 2.78866 2.98201 3.36464 3.42739 3.44727 3.52223 3.69093 4.14883 4.34541 4.42469 4.46529 4.57420 4.65012 4.68244 4.85986 4.91922 5.14032 5.19665 5.27423 5.38020 5.39687 5.48896 5.61603 5.66947 5.69327 5.75771 5.84548 5.87983 5.99071 6.15813 6.16636 6.25299 6.30596 6.45281 6.52978 6.65496 6.75853 7.02800 7.34473 7.48672 7.51944 7.57195 7.78595 7.98098 8.20787 9.17869 9.77647 10.43354 11.35941 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016393 B = 0.002848 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.685521 B = 9827.674797 C =10847.134194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.151 4.151 3 C 0.242 3.758 4 C -0.152 4.152 5 C -0.075 4.075 6 C -0.174 4.174 7 C 0.576 3.424 8 O -0.535 6.535 9 N -0.606 5.606 10 C 0.087 3.913 11 C -0.112 4.112 12 C -0.084 4.084 13 C -0.130 4.130 14 C 0.180 3.820 15 N -0.604 5.604 16 C -0.227 4.227 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.153 3.847 25 C 0.124 3.876 26 C 0.165 3.835 27 N -0.474 5.474 28 H 0.231 0.769 29 H 0.146 0.854 30 H 0.178 0.822 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.252 0.748 40 H 0.020 0.980 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.155 10.919 -6.840 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.152 4.152 3 C 0.107 3.893 4 C -0.172 4.172 5 C -0.100 4.100 6 C -0.179 4.179 7 C 0.365 3.635 8 O -0.414 6.414 9 N -0.339 5.339 10 C -0.036 4.036 11 C -0.150 4.150 12 C -0.086 4.086 13 C -0.169 4.169 14 C 0.055 3.945 15 N -0.331 5.331 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.026 3.974 25 C 0.002 3.998 26 C 0.006 3.994 27 N -0.182 5.182 28 H 0.248 0.752 29 H 0.164 0.836 30 H 0.195 0.805 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -16.235 11.976 -6.195 21.104 hybrid contribution 0.265 -1.559 0.206 1.594 sum -15.970 10.417 -5.989 19.986 Atomic orbital electron populations 1.24974 0.95640 0.97761 0.96881 1.19309 0.91062 1.02164 1.02628 1.16820 0.88215 0.90689 0.93574 1.22058 0.94562 0.99423 1.01128 1.23234 0.94769 0.97819 0.94180 1.21080 0.94670 0.97989 1.04143 1.17581 0.85778 0.82262 0.77897 1.90798 1.72148 1.30523 1.47901 1.48509 1.08488 1.16259 1.60612 1.22718 0.97969 0.85524 0.97345 1.22440 0.93127 0.99720 0.99685 1.21646 0.96411 0.92365 0.98134 1.22648 0.93775 1.00646 0.99807 1.21209 0.94223 0.89997 0.89079 1.44588 1.41636 1.13295 1.33577 1.19081 1.17191 0.91684 1.07540 0.90501 1.24786 0.98610 0.98404 0.98622 1.69967 1.25546 1.30325 1.31091 0.86064 0.77309 0.82831 0.79683 1.20540 1.21776 1.21760 1.21224 0.95163 0.89008 0.91958 1.22158 0.78555 0.96492 1.02585 1.22976 0.87851 0.96397 0.92220 1.67863 1.09670 1.24395 1.16299 0.75245 0.83621 0.80534 0.90298 0.90634 0.88629 0.90489 0.91720 0.92016 0.93466 0.93916 0.93806 0.96208 0.94412 0.91027 0.90007 0.80753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 19.25 29.55 0.57 -0.40 16 2 C -0.15 -1.53 13.43 -38.84 -0.52 -2.05 16 3 C 0.24 2.75 6.59 -84.91 -0.56 2.19 16 4 C -0.15 -1.41 9.77 -39.12 -0.38 -1.79 16 5 C -0.08 -0.73 8.66 -38.93 -0.34 -1.06 16 6 C -0.17 -2.08 5.89 -104.76 -0.62 -2.70 16 7 C 0.58 8.13 7.81 -12.41 -0.10 8.03 16 8 O -0.54 -9.12 16.71 5.30 0.09 -9.03 16 9 N -0.61 -7.90 3.34 -173.26 -0.58 -8.48 16 10 C 0.09 0.92 4.86 -2.81 -0.01 0.90 16 11 C -0.11 -1.43 5.90 -25.70 -0.15 -1.59 16 12 C -0.08 -1.29 0.62 -154.02 -0.10 -1.38 16 13 C -0.13 -2.17 5.98 -25.70 -0.15 -2.33 16 14 C 0.18 4.07 5.37 -2.81 -0.02 4.05 16 15 N -0.60 -14.56 3.41 -170.59 -0.58 -15.14 16 16 C -0.23 -6.09 10.28 -15.06 -0.15 -6.24 16 17 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 18 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -26.22 10.30 55.49 0.57 -25.65 16 20 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.15 2.96 6.21 -3.30 -0.02 2.94 16 25 C 0.12 1.73 5.93 -3.19 -0.02 1.71 16 26 C 0.17 2.02 10.75 -17.17 -0.18 1.84 16 27 N -0.47 -6.05 10.26 -10.79 -0.11 -6.16 16 28 H 0.23 0.63 7.80 -54.09 -0.42 0.21 16 29 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 30 H 0.18 1.38 2.91 -54.04 -0.16 1.22 16 31 H 0.08 0.79 6.67 -51.93 -0.35 0.44 16 32 H 0.08 0.60 6.79 -51.93 -0.35 0.25 16 33 H 0.10 1.40 8.00 -51.93 -0.42 0.99 16 34 H 0.08 0.87 7.83 -51.93 -0.41 0.47 16 35 H 0.06 0.95 7.79 -51.93 -0.40 0.55 16 36 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 37 H 0.05 1.18 7.39 -51.93 -0.38 0.79 16 38 H 0.04 1.10 7.49 -51.93 -0.39 0.71 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 40 H 0.02 0.41 7.86 -51.93 -0.41 0.00 16 41 H 0.04 0.72 8.01 -51.93 -0.42 0.31 16 42 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 43 H 0.08 1.24 7.80 -51.93 -0.41 0.84 16 44 H 0.18 1.99 7.67 -52.49 -0.40 1.58 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -32.86 362.04 -8.74 -41.61 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.72 Total: -1.00 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -2.85 Total: 1.80 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.70 Total: -55.43 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.86 -8.74 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041793607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.228 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds