Wall clock time and date at job start Tue Mar 31 2020 13:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29434 * 124.80127 * 2 1 4 4 C 1.30942 * 117.36033 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.90157 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47062 * 90.02611 * 5 4 3 7 7 C 1.53004 * 109.47336 * 64.99960 * 6 5 4 8 8 C 1.53003 * 109.47103 * 185.00057 * 6 5 4 9 9 C 1.35659 * 114.19387 * 0.02562 * 4 3 2 10 10 C 1.46681 * 126.13303 * 180.02562 * 9 4 3 11 11 O 1.21691 * 119.99712 * 0.02562 * 10 9 4 12 12 N 1.34777 * 120.00468 * 180.02562 * 10 9 4 13 13 C 1.46494 * 120.00385 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47319 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47183 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47199 * 180.02562 * 15 14 13 17 17 C 1.36937 * 120.00280 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99504 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99934 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00438 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99652 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47436 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47050 * 119.99868 * 21 19 17 24 24 H 1.48498 * 109.46975 * 239.99797 * 21 19 17 25 25 S 1.70945 * 124.80702 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47140 * 89.99922 * 1 2 3 27 27 H 1.08998 * 109.46645 * 210.00150 * 1 2 3 28 28 H 1.09000 * 109.47230 * 330.00010 * 1 2 3 29 29 H 1.08998 * 109.46893 * 210.02353 * 5 4 3 30 30 H 1.08996 * 109.47085 * 330.02333 * 5 4 3 31 31 H 1.09001 * 109.46896 * 304.99709 * 6 5 4 32 32 H 1.08997 * 109.46935 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.46611 * 300.00204 * 7 6 5 34 34 H 1.08998 * 109.46680 * 59.99678 * 7 6 5 35 35 H 1.08996 * 109.47181 * 59.99607 * 8 6 5 36 36 H 1.08994 * 109.46952 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.46960 * 299.99613 * 8 6 5 38 38 H 0.97001 * 119.99335 * 359.97438 * 12 10 9 39 39 H 1.08997 * 109.47326 * 300.00673 * 13 12 10 40 40 H 1.09004 * 109.46710 * 59.99979 * 13 12 10 41 41 H 1.08999 * 109.46964 * 300.00028 * 14 13 12 42 42 H 1.08998 * 109.46894 * 60.00592 * 14 13 12 43 43 H 1.08999 * 109.46863 * 299.99685 * 15 14 13 44 44 H 1.09004 * 109.47108 * 59.99819 * 15 14 13 45 45 H 0.97003 * 119.99738 * 359.97438 * 16 15 14 46 46 H 0.97002 * 120.00596 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 0.0005 5 6 4.5197 2.0419 0.0000 6 6 4.8499 2.4312 1.4424 7 6 5.5844 1.2766 2.1269 8 6 5.7412 3.6748 1.4437 9 6 3.9352 -0.4058 0.0004 10 6 5.3189 -0.8925 0.0015 11 8 6.2425 -0.1002 0.0030 12 7 5.5674 -2.2172 0.0007 13 6 6.9493 -2.7033 0.0012 14 6 6.9518 -4.2332 0.0008 15 6 8.3952 -4.7409 0.0020 16 7 8.3976 -6.2059 0.0010 17 6 9.5846 -6.8887 0.0023 18 1 10.5189 -6.3471 0.0036 19 6 9.5868 -8.2768 0.0019 20 7 8.4481 -8.9367 0.0008 21 14 11.2061 -9.2081 0.0029 22 1 12.3332 -8.2413 0.0035 23 1 11.2852 -10.0621 1.2153 24 1 11.2870 -10.0614 -1.2097 25 16 2.4828 -1.4036 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 5.4332 1.7424 -0.5137 30 1 4.0766 2.8947 -0.5142 31 1 3.9269 2.6451 1.9813 32 1 5.8200 1.5542 3.1543 33 1 4.9493 0.3907 2.1259 34 1 6.5073 1.0627 1.5879 35 1 5.2180 4.4973 0.9560 36 1 5.9768 3.9518 2.4712 37 1 6.6642 3.4609 0.9047 38 1 4.8310 -2.8486 -0.0001 39 1 7.4631 -2.3384 -0.8882 40 1 7.4620 -2.3396 0.8918 41 1 6.4382 -4.5976 0.8905 42 1 6.4390 -4.5971 -0.8895 43 1 8.9091 -4.3765 -0.8875 44 1 8.9077 -4.3769 0.8925 45 1 7.5583 -6.6922 0.0002 46 1 8.4496 -9.9067 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161898607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:52 Heat of formation + Delta-G solvation = -4.354928 kcal Electronic energy + Delta-G solvation = -24816.545027 eV Core-core repulsion = 21253.569982 eV Total energy + Delta-G solvation = -3562.975045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.85555 -39.29753 -36.49527 -35.86932 -34.38816 -32.75951 -31.99747 -29.96562 -29.02235 -27.97666 -27.13103 -25.25193 -23.39662 -22.89609 -21.58454 -21.22101 -20.38408 -19.60822 -18.15273 -17.27501 -16.78090 -16.10472 -15.93141 -15.37831 -15.35052 -14.78061 -14.51284 -14.40741 -14.21017 -13.90893 -13.85865 -13.30994 -13.05585 -12.98081 -12.89884 -12.63947 -12.51725 -12.42571 -11.99916 -11.70728 -11.55490 -11.08490 -11.02167 -10.95786 -10.93886 -10.85558 -10.74160 -10.64701 -10.21205 -10.06423 -9.87114 -9.78264 -9.72015 -9.15310 -8.95937 -8.90442 -6.95677 -5.79226 -3.08252 -0.06291 0.83768 1.24224 2.15557 2.98148 2.98676 3.42378 3.48205 3.50419 3.62626 4.45025 4.57046 4.58446 4.70567 4.82506 4.84243 4.95405 4.99630 5.06815 5.11566 5.25941 5.37101 5.51577 5.52686 5.55527 5.57667 5.62396 5.66248 5.81938 5.86041 5.92222 5.96386 6.01365 6.11606 6.14884 6.20708 6.27049 6.28551 6.53535 6.75304 6.79683 7.23964 7.37410 7.68939 8.01559 8.39654 9.50936 10.07718 10.42291 11.43858 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.002277 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.469062 B =12292.940499 C =13645.176290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.062 3.938 3 N -0.477 5.477 4 C 0.156 3.844 5 C -0.053 4.053 6 C -0.080 4.080 7 C -0.150 4.150 8 C -0.143 4.143 9 C -0.294 4.294 10 C 0.593 3.407 11 O -0.515 6.515 12 N -0.722 5.722 13 C 0.124 3.876 14 C -0.139 4.139 15 C 0.157 3.843 16 N -0.734 5.734 17 C -0.239 4.239 18 H 0.072 0.928 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 S 0.156 5.844 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.397 0.603 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.617 22.705 0.986 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.214 4.214 3 N -0.192 5.192 4 C 0.018 3.982 5 C -0.093 4.093 6 C -0.099 4.099 7 C -0.207 4.207 8 C -0.201 4.201 9 C -0.418 4.418 10 C 0.378 3.622 11 O -0.393 6.393 12 N -0.373 5.373 13 C 0.001 3.999 14 C -0.177 4.177 15 C 0.029 3.971 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.090 0.910 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 S 0.414 5.586 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.231 0.769 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.217 0.783 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.264 22.598 0.983 28.455 hybrid contribution 0.583 -0.545 0.012 0.798 sum -16.681 22.053 0.996 27.670 Atomic orbital electron populations 1.20539 0.84650 1.04653 1.04323 1.27383 1.02103 0.91104 1.00787 1.66085 1.04473 1.31183 1.17432 1.20615 0.89696 0.93504 0.94409 1.20609 0.96928 0.93247 0.98520 1.20943 0.98670 0.95895 0.94419 1.22125 1.01926 0.97103 0.99568 1.21796 0.99850 0.96685 1.01754 1.25501 0.97970 0.97135 1.21225 1.16610 0.85982 0.82558 0.77034 1.90750 1.44330 1.54546 1.49659 1.45990 1.10038 1.06106 1.75178 1.21415 0.80970 0.94695 1.02796 1.21963 1.00343 0.92617 1.02808 1.20510 0.91981 0.86341 0.98260 1.42346 1.06532 0.99341 1.89611 1.19288 0.86107 0.89109 1.42534 0.91020 1.24757 0.96952 0.96393 1.02996 1.69665 1.24003 1.06736 1.57906 0.86097 0.82921 0.79874 0.77198 1.20492 1.21825 1.21831 1.83958 0.96711 1.11461 1.66512 0.89067 0.89671 0.88886 0.87466 0.90450 0.91823 0.93774 0.93854 0.89775 0.92840 0.92647 0.92176 0.76880 0.90951 0.90957 0.91245 0.91238 0.95997 0.95996 0.78302 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.46 36.01 0.38 -0.02 16 2 C 0.06 0.54 7.39 -13.29 -0.10 0.44 16 3 N -0.48 -5.26 10.50 -7.70 -0.08 -5.34 16 4 C 0.16 1.81 5.58 -83.89 -0.47 1.34 16 5 C -0.05 -0.58 4.82 -27.88 -0.13 -0.72 16 6 C -0.08 -0.82 2.91 -90.62 -0.26 -1.09 16 7 C -0.15 -1.74 7.63 37.16 0.28 -1.45 16 8 C -0.14 -1.24 9.19 37.16 0.34 -0.90 16 9 C -0.29 -3.38 5.48 -37.10 -0.20 -3.58 16 10 C 0.59 7.61 6.71 -12.85 -0.09 7.53 16 11 O -0.51 -7.53 10.94 5.20 0.06 -7.47 16 12 N -0.72 -8.60 5.55 -61.62 -0.34 -8.94 16 13 C 0.12 1.64 5.67 -4.05 -0.02 1.62 16 14 C -0.14 -2.09 5.44 -26.73 -0.15 -2.24 16 15 C 0.16 3.09 6.26 -4.04 -0.03 3.07 16 16 N -0.73 -18.56 5.60 -59.91 -0.34 -18.90 16 17 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 21 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 S 0.16 1.35 22.31 -107.50 -2.40 -1.05 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.11 1.30 6.01 -51.93 -0.31 0.99 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.54 5.79 -51.93 -0.30 0.24 16 34 H 0.08 1.10 5.89 -51.93 -0.31 0.80 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.40 4.06 7.66 -40.82 -0.31 3.75 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.38 10.09 7.67 -40.82 -0.31 9.77 16 46 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -32.56 383.15 -9.75 -42.30 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.43 Total: 7.15 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.69 Total: -3.42 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.03 Total: -60.69 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.06 Total: -7.47 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.40 Total: -1.05 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.56 -9.75 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161898607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.949 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds