Wall clock time and date at job start Tue Mar 31 2020 15:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47057 * 2 1 4 4 C 1.50702 * 109.46595 * 240.00704 * 2 1 3 5 5 C 1.38219 * 119.62031 * 85.00067 * 4 2 1 6 6 C 1.38631 * 119.16143 * 180.02562 * 5 4 2 7 7 C 1.38676 * 118.41900 * 359.97438 * 6 5 4 8 8 C 1.38177 * 119.16136 * 0.27669 * 7 6 5 9 9 N 1.31854 * 119.61493 * 265.01864 * 4 2 1 10 10 N 1.46495 * 109.47346 * 120.00709 * 2 1 3 11 11 C 1.46497 * 120.00234 * 59.99337 * 10 2 1 12 12 C 1.34781 * 119.99723 * 240.00191 * 10 2 1 13 13 O 1.21581 * 120.00068 * 359.97438 * 12 10 2 14 14 N 1.34776 * 119.99684 * 179.97438 * 12 10 2 15 15 C 1.39248 * 119.99788 * 176.72153 * 14 12 10 16 16 C 1.39478 * 119.83516 * 217.48860 * 15 14 12 17 17 C 1.36375 * 120.16648 * 179.76405 * 16 15 14 18 18 C 1.40864 * 119.82734 * 0.51205 * 17 16 15 19 19 C 1.41159 * 120.16276 * 179.71679 * 18 17 16 20 20 H 1.07999 * 120.00208 * 157.84951 * 19 18 17 21 21 C 1.39901 * 120.00140 * 337.85225 * 19 18 17 22 22 N 1.30878 * 119.99934 * 327.72182 * 21 19 18 23 23 Si 1.86799 * 119.99872 * 147.71904 * 21 19 18 24 24 H 1.48503 * 109.47049 * 94.98891 * 23 21 19 25 25 H 1.48507 * 109.47016 * 214.98615 * 23 21 19 26 26 H 1.48492 * 109.47345 * 334.98748 * 23 21 19 27 27 C 1.40862 * 119.67548 * 359.74565 * 18 17 16 28 28 C 1.36373 * 119.82865 * 359.97438 * 27 18 17 29 29 H 1.09008 * 109.47283 * 299.99591 * 1 2 3 30 30 H 1.09001 * 109.47653 * 59.99218 * 1 2 3 31 31 H 1.09003 * 109.47480 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.42490 * 0.04206 * 5 4 2 33 33 H 1.08003 * 120.78897 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.41776 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.61427 * 179.70192 * 8 7 6 36 36 H 1.08999 * 109.46669 * 90.00294 * 11 10 2 37 37 H 1.08999 * 109.47518 * 209.99846 * 11 10 2 38 38 H 1.08998 * 109.47415 * 330.00515 * 11 10 2 39 39 H 0.96997 * 120.00335 * 356.73022 * 14 12 10 40 40 H 1.07998 * 119.91592 * 0.02904 * 16 15 14 41 41 H 1.08006 * 120.08217 * 180.25854 * 17 16 15 42 42 H 0.96996 * 120.00223 * 179.97438 * 22 21 19 43 43 H 1.07999 * 120.08711 * 179.97438 * 27 18 17 44 44 H 1.08002 * 119.91803 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 6 2.1611 -0.0130 -2.4170 6 6 2.6235 -0.6759 -3.5434 7 6 2.9408 -2.0214 -3.4335 8 6 2.7812 -2.6535 -2.2152 9 7 2.3432 -1.9898 -1.1631 10 7 2.0183 -0.6907 1.1960 11 6 1.6644 -2.0933 1.4278 12 6 2.7932 -0.0357 2.0833 13 8 3.0872 1.1282 1.8907 14 7 3.2421 -0.6711 3.1839 15 6 4.0980 -0.0160 4.0655 16 6 5.1335 -0.7203 4.6796 17 6 5.9786 -0.0843 5.5404 18 6 5.7971 1.2849 5.8171 19 6 6.6641 1.9488 6.7116 20 1 6.7710 3.0224 6.6633 21 6 7.3849 1.2161 7.6606 22 7 6.8726 0.1261 8.1729 23 14 9.0787 1.7934 8.1966 24 1 8.9566 2.6035 9.4351 25 1 9.9432 0.6148 8.4593 26 1 9.6829 2.6206 7.1216 27 6 4.7458 1.9882 5.1972 28 6 3.9122 1.3401 4.3342 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.9052 1.0350 -2.4660 33 1 2.7339 -0.1568 -4.4840 34 1 3.3042 -2.5692 -4.2904 35 1 3.0216 -3.7024 -2.1226 36 1 2.4157 -2.7377 0.9714 37 1 1.6238 -2.2854 2.5000 38 1 0.6904 -2.3003 0.9845 39 1 2.9690 -1.5846 3.3618 40 1 5.2689 -1.7710 4.4695 41 1 6.7825 -0.6301 6.0120 42 1 7.3725 -0.3821 8.8306 43 1 4.6002 3.0380 5.4048 44 1 3.1054 1.8778 3.8584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068528846.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:25 Heat of formation + Delta-G solvation = 45.522354 kcal Electronic energy + Delta-G solvation = -26548.029525 eV Core-core repulsion = 22851.773370 eV Total energy + Delta-G solvation = -3696.256155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.73207 -39.71126 -37.53091 -35.90597 -34.39776 -33.24754 -32.60531 -32.09090 -29.85343 -29.43670 -28.68522 -26.75903 -25.06350 -24.17266 -23.69422 -22.06392 -21.12224 -20.45474 -19.19095 -17.97466 -17.26903 -17.14233 -16.50246 -16.14686 -15.74537 -15.18519 -15.14126 -14.83405 -14.46264 -13.93720 -13.83035 -13.57942 -13.45861 -13.19650 -12.82368 -12.59584 -12.39832 -12.37083 -12.19172 -11.96027 -11.89688 -11.87451 -11.35778 -11.23353 -11.09271 -10.86458 -10.46204 -10.10428 -10.07862 -9.69698 -9.64994 -9.46396 -9.18111 -9.04190 -8.62712 -8.36305 -7.45860 -7.04412 -6.79342 -4.18943 0.88626 1.07704 2.72763 2.98016 3.08572 3.10430 3.18060 3.24748 3.59777 3.74760 3.94814 4.07688 4.48747 4.51229 4.59260 4.62627 4.85625 4.92697 5.08459 5.10138 5.22934 5.35281 5.44097 5.54409 5.66170 5.72019 5.76415 5.88354 5.94380 6.02046 6.05392 6.27344 6.49136 6.51028 6.62648 6.86798 7.01127 7.08265 7.18921 7.33979 7.40194 7.67487 7.81807 7.94654 8.03345 8.11356 8.34688 8.56661 8.63773 8.92142 8.99593 9.22565 10.09876 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.002464 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.085390 B =11360.834927 C =11575.133121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.205 3.795 3 H 0.118 0.882 4 C 0.126 3.874 5 C -0.165 4.165 6 C -0.073 4.073 7 C -0.181 4.181 8 C 0.099 3.901 9 N -0.469 5.469 10 N -0.622 5.622 11 C 0.095 3.905 12 C 0.699 3.301 13 O -0.584 6.584 14 N -0.663 5.663 15 C 0.001 3.999 16 C -0.105 4.105 17 C -0.170 4.170 18 C 0.111 3.889 19 C -0.468 4.468 20 H 0.081 0.919 21 C 0.088 3.912 22 N -0.772 5.772 23 Si 0.894 3.106 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.258 1.258 27 C -0.222 4.222 28 C -0.067 4.067 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.154 0.846 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.391 0.609 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.282 0.718 43 H 0.093 0.907 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.377 -7.116 -18.475 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.099 3.901 3 H 0.136 0.864 4 C -0.013 4.013 5 C -0.185 4.185 6 C -0.099 4.099 7 C -0.201 4.201 8 C -0.058 4.058 9 N -0.178 5.178 10 N -0.360 5.360 11 C -0.048 4.048 12 C 0.401 3.599 13 O -0.462 6.462 14 N -0.310 5.310 15 C -0.092 4.092 16 C -0.125 4.125 17 C -0.190 4.190 18 C 0.108 3.892 19 C -0.496 4.496 20 H 0.099 0.901 21 C -0.133 4.133 22 N -0.396 5.396 23 Si 0.718 3.282 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.182 1.182 27 C -0.243 4.243 28 C -0.087 4.087 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.171 0.829 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.226 0.774 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.228 -6.914 -17.625 21.519 hybrid contribution 0.824 -0.088 -0.552 0.996 sum -9.404 -7.002 -18.177 21.631 Atomic orbital electron populations 1.22127 0.93741 1.02660 1.02868 1.19711 0.93821 0.96654 0.79906 0.86383 1.21736 0.94397 0.90432 0.94785 1.21903 1.01648 1.01554 0.93395 1.21556 0.95251 0.94496 0.98636 1.22123 1.02532 0.95801 0.99609 1.22804 0.94662 1.00082 0.88269 1.67613 1.10719 1.08552 1.30925 1.46770 1.54259 1.12461 1.22464 1.21632 1.01529 0.82040 0.99605 1.15931 0.79107 0.85011 0.79868 1.90873 1.62624 1.15344 1.77357 1.42193 1.49818 1.16778 1.22235 1.16893 0.97386 0.93198 1.01676 1.20152 0.94930 0.97541 0.99907 1.20596 1.01106 0.95689 1.01591 1.17577 0.89658 0.91626 0.90308 1.19471 1.21259 0.95367 1.13499 0.90129 1.25915 0.98941 0.93993 0.94417 1.69954 1.36015 1.14363 1.19227 0.86540 0.82524 0.79605 0.79558 1.19534 1.19966 1.18156 1.20597 0.99204 0.99073 1.05379 1.20329 0.98958 0.93049 0.96348 0.91138 0.91401 0.92024 0.84625 0.84871 0.85017 0.82854 0.91416 0.92826 0.91591 0.77394 0.89418 0.87545 0.90733 0.88830 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.15 37.16 0.34 -1.17 16 2 C 0.21 2.61 2.91 -69.09 -0.20 2.41 16 3 H 0.12 1.70 6.87 -51.93 -0.36 1.34 16 4 C 0.13 1.49 5.88 -82.59 -0.49 1.00 16 5 C -0.16 -1.62 9.77 -39.44 -0.39 -2.00 16 6 C -0.07 -0.61 10.18 -39.27 -0.40 -1.01 16 7 C -0.18 -1.45 10.11 -39.44 -0.40 -1.85 16 8 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 9 N -0.47 -5.54 7.23 -9.48 -0.07 -5.60 16 10 N -0.62 -9.16 2.70 -181.02 -0.49 -9.65 16 11 C 0.10 1.11 8.60 59.85 0.51 1.62 16 12 C 0.70 13.50 8.09 -86.91 -0.70 12.80 16 13 O -0.58 -13.44 13.28 5.29 0.07 -13.37 16 14 N -0.66 -12.88 5.17 -14.10 -0.07 -12.95 16 15 C 0.00 0.02 6.25 -83.57 -0.52 -0.50 16 16 C -0.10 -2.51 9.90 -39.79 -0.39 -2.90 16 17 C -0.17 -4.48 8.74 -39.26 -0.34 -4.83 16 18 C 0.11 3.06 5.57 -106.80 -0.59 2.46 16 19 C -0.47 -12.68 8.94 -37.85 -0.34 -13.02 16 20 H 0.08 2.12 8.01 -52.49 -0.42 1.70 16 21 C 0.09 2.24 4.77 -17.34 -0.08 2.15 16 22 N -0.77 -19.93 11.78 55.55 0.65 -19.27 16 23 Si 0.89 18.64 29.66 -169.99 -5.04 13.59 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 27 C -0.22 -5.86 9.74 -39.26 -0.38 -6.24 16 28 C -0.07 -1.68 8.59 -39.79 -0.34 -2.02 16 29 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.57 6.66 -51.93 -0.35 0.22 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 34 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.07 0.81 6.95 -51.93 -0.36 0.45 16 37 H 0.05 0.58 6.32 -51.93 -0.33 0.25 16 38 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 39 H 0.39 6.31 6.52 -40.82 -0.27 6.04 16 40 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.11 2.84 6.53 -52.48 -0.34 2.49 16 42 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 43 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 44 H 0.10 2.57 6.44 -52.49 -0.34 2.24 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -32.49 363.18 -10.00 -42.48 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.61 Total: 11.64 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -4.91 Total: -12.35 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.02 Total: -47.48 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.37 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.04 Total: 13.59 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.49 -10.00 -42.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068528846.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.006 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds