Wall clock time and date at job start Tue Mar 31 2020 15:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47057 * 2 1 4 4 C 1.50702 * 109.46595 * 240.00704 * 2 1 3 5 5 C 1.38219 * 119.62031 * 85.00067 * 4 2 1 6 6 C 1.38631 * 119.16143 * 180.02562 * 5 4 2 7 7 C 1.38676 * 118.41900 * 359.97438 * 6 5 4 8 8 C 1.38177 * 119.16136 * 0.27669 * 7 6 5 9 9 N 1.31854 * 119.61493 * 265.01864 * 4 2 1 10 10 N 1.46495 * 109.47346 * 120.00709 * 2 1 3 11 11 C 1.46497 * 120.00234 * 59.99337 * 10 2 1 12 12 C 1.34781 * 119.99723 * 240.00191 * 10 2 1 13 13 O 1.21581 * 120.00068 * 359.97438 * 12 10 2 14 14 N 1.34776 * 119.99684 * 179.97438 * 12 10 2 15 15 C 1.39248 * 119.99788 * 176.72153 * 14 12 10 16 16 C 1.39478 * 119.83516 * 217.48860 * 15 14 12 17 17 C 1.36375 * 120.16648 * 179.76405 * 16 15 14 18 18 C 1.40864 * 119.82734 * 0.51205 * 17 16 15 19 19 C 1.41159 * 120.16276 * 179.71679 * 18 17 16 20 20 H 1.07999 * 120.00208 * 157.84951 * 19 18 17 21 21 C 1.39901 * 120.00140 * 337.85225 * 19 18 17 22 22 N 1.30878 * 119.99934 * 327.72182 * 21 19 18 23 23 Si 1.86799 * 119.99872 * 147.71904 * 21 19 18 24 24 H 1.48503 * 109.47049 * 94.98891 * 23 21 19 25 25 H 1.48507 * 109.47016 * 214.98615 * 23 21 19 26 26 H 1.48492 * 109.47345 * 334.98748 * 23 21 19 27 27 C 1.40862 * 119.67548 * 359.74565 * 18 17 16 28 28 C 1.36373 * 119.82865 * 359.97438 * 27 18 17 29 29 H 1.09008 * 109.47283 * 299.99591 * 1 2 3 30 30 H 1.09001 * 109.47653 * 59.99218 * 1 2 3 31 31 H 1.09003 * 109.47480 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.42490 * 0.04206 * 5 4 2 33 33 H 1.08003 * 120.78897 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.41776 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.61427 * 179.70192 * 8 7 6 36 36 H 1.08999 * 109.46669 * 90.00294 * 11 10 2 37 37 H 1.08999 * 109.47518 * 209.99846 * 11 10 2 38 38 H 1.08998 * 109.47415 * 330.00515 * 11 10 2 39 39 H 0.96997 * 120.00335 * 356.73022 * 14 12 10 40 40 H 1.07998 * 119.91592 * 0.02904 * 16 15 14 41 41 H 1.08006 * 120.08217 * 180.25854 * 17 16 15 42 42 H 0.96996 * 120.00223 * 179.97438 * 22 21 19 43 43 H 1.07999 * 120.08711 * 179.97438 * 27 18 17 44 44 H 1.08002 * 119.91803 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 6 2.1611 -0.0130 -2.4170 6 6 2.6235 -0.6759 -3.5434 7 6 2.9408 -2.0214 -3.4335 8 6 2.7812 -2.6535 -2.2152 9 7 2.3432 -1.9898 -1.1631 10 7 2.0183 -0.6907 1.1960 11 6 1.6644 -2.0933 1.4278 12 6 2.7932 -0.0357 2.0833 13 8 3.0872 1.1282 1.8907 14 7 3.2421 -0.6711 3.1839 15 6 4.0980 -0.0160 4.0655 16 6 5.1335 -0.7203 4.6796 17 6 5.9786 -0.0843 5.5404 18 6 5.7971 1.2849 5.8171 19 6 6.6641 1.9488 6.7116 20 1 6.7710 3.0224 6.6633 21 6 7.3849 1.2161 7.6606 22 7 6.8726 0.1261 8.1729 23 14 9.0787 1.7934 8.1966 24 1 8.9566 2.6035 9.4351 25 1 9.9432 0.6148 8.4593 26 1 9.6829 2.6206 7.1216 27 6 4.7458 1.9882 5.1972 28 6 3.9122 1.3401 4.3342 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.9052 1.0350 -2.4660 33 1 2.7339 -0.1568 -4.4840 34 1 3.3042 -2.5692 -4.2904 35 1 3.0216 -3.7024 -2.1226 36 1 2.4157 -2.7377 0.9714 37 1 1.6238 -2.2854 2.5000 38 1 0.6904 -2.3003 0.9845 39 1 2.9690 -1.5846 3.3618 40 1 5.2689 -1.7710 4.4695 41 1 6.7825 -0.6301 6.0120 42 1 7.3725 -0.3821 8.8306 43 1 4.6002 3.0380 5.4048 44 1 3.1054 1.8778 3.8584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068528846.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:24 Heat of formation + Delta-G solvation = 27.632064 kcal Electronic energy + Delta-G solvation = -26548.805306 eV Core-core repulsion = 22851.773370 eV Total energy + Delta-G solvation = -3697.031936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.80402 -40.92194 -39.29494 -37.20399 -36.16439 -34.94123 -33.33197 -33.23464 -31.44736 -30.89583 -30.28784 -27.84703 -26.78210 -25.18786 -24.40398 -23.56855 -22.84254 -22.02256 -20.61384 -19.41952 -19.16929 -18.16092 -17.68488 -17.26901 -16.98075 -16.67522 -16.32841 -16.06846 -15.73397 -15.41398 -15.07654 -14.84621 -14.51534 -14.49640 -14.26226 -13.97307 -13.89287 -13.72355 -13.34502 -13.19840 -13.13479 -13.11125 -12.81752 -12.68244 -12.59902 -12.31594 -12.08424 -11.89978 -11.57365 -11.22866 -10.91892 -10.77247 -10.49515 -10.45753 -9.90340 -9.54674 -9.46192 -8.95279 -8.68633 -6.20785 0.17155 0.40217 0.88046 1.15008 1.38400 1.45558 1.56652 1.70693 2.18224 2.22130 2.67757 2.86640 3.11276 3.28257 3.72595 3.77603 4.06340 4.15604 4.18755 4.26362 4.31318 4.33476 4.39020 4.51545 4.62076 4.70107 4.76899 4.83267 4.87838 4.92392 5.10093 5.10740 5.16538 5.19228 5.23246 5.28895 5.30329 5.46727 5.54669 5.66041 5.81372 5.82271 6.04637 6.13758 6.16390 6.38242 6.63798 6.91067 7.01800 7.04647 7.08255 7.66649 8.22928 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.002464 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.085390 B =11360.834927 C =11575.133121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.200 3.800 3 H 0.093 0.907 4 C 0.101 3.899 5 C -0.175 4.175 6 C -0.075 4.075 7 C -0.174 4.174 8 C 0.084 3.916 9 N -0.491 5.491 10 N -0.611 5.611 11 C 0.094 3.906 12 C 0.694 3.306 13 O -0.627 6.627 14 N -0.658 5.658 15 C 0.012 3.988 16 C -0.103 4.103 17 C -0.187 4.187 18 C 0.083 3.917 19 C -0.506 4.506 20 H 0.074 0.926 21 C 0.052 3.948 22 N -0.800 5.800 23 Si 0.972 3.028 24 H -0.259 1.259 25 H -0.261 1.261 26 H -0.262 1.262 27 C -0.243 4.243 28 C -0.076 4.076 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.175 0.825 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.409 0.591 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.294 0.706 43 H 0.092 0.908 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.299 -8.910 -20.168 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.094 3.906 3 H 0.111 0.889 4 C -0.037 4.037 5 C -0.195 4.195 6 C -0.101 4.101 7 C -0.194 4.194 8 C -0.073 4.073 9 N -0.201 5.201 10 N -0.347 5.347 11 C -0.048 4.048 12 C 0.396 3.604 13 O -0.508 6.508 14 N -0.307 5.307 15 C -0.081 4.081 16 C -0.123 4.123 17 C -0.207 4.207 18 C 0.080 3.920 19 C -0.534 4.534 20 H 0.092 0.908 21 C -0.168 4.168 22 N -0.423 5.423 23 Si 0.792 3.208 24 H -0.183 1.183 25 H -0.185 1.185 26 H -0.186 1.186 27 C -0.263 4.263 28 C -0.096 4.096 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.164 0.836 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.192 0.808 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.247 0.753 40 H 0.137 0.863 41 H 0.117 0.883 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.210 -8.761 -19.350 23.567 hybrid contribution 0.689 0.386 -0.188 0.812 sum -9.521 -8.375 -19.538 23.292 Atomic orbital electron populations 1.22051 0.91441 1.03349 1.03462 1.19851 0.95571 0.95432 0.79702 0.88876 1.21578 0.96283 0.90993 0.94863 1.22109 1.01742 1.02226 0.93412 1.21949 0.94167 0.94826 0.99171 1.22498 1.01004 0.95858 1.00026 1.23267 0.94510 1.01130 0.88413 1.67525 1.11618 1.08619 1.32304 1.46825 1.52521 1.13469 1.21891 1.21798 1.02567 0.79993 1.00434 1.16119 0.79389 0.84630 0.80282 1.90843 1.64283 1.17378 1.78311 1.42003 1.49383 1.17413 1.21912 1.16933 0.97312 0.92718 1.01180 1.20394 0.94075 0.99003 0.98836 1.20621 1.01875 0.95481 1.02727 1.17889 0.90305 0.92574 0.91213 1.19679 1.23239 0.95490 1.14966 0.90755 1.26725 1.02297 0.93969 0.93775 1.69947 1.37598 1.15230 1.19559 0.85372 0.76940 0.79420 0.79091 1.18345 1.18472 1.18633 1.20723 0.99825 0.99339 1.06394 1.20410 0.98816 0.94089 0.96270 0.91990 0.89351 0.91154 0.83584 0.82058 0.82019 0.80758 0.91347 0.91894 0.89579 0.75321 0.86264 0.88279 0.89521 0.88952 0.88156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.15 71.98 0.66 -2.00 16 2 C 0.20 5.03 2.91 44.25 0.13 5.16 16 3 H 0.09 2.79 6.87 -2.39 -0.02 2.78 16 4 C 0.10 2.30 5.88 42.55 0.25 2.55 16 5 C -0.17 -3.19 9.77 22.36 0.22 -2.97 16 6 C -0.08 -1.04 10.18 22.47 0.23 -0.81 16 7 C -0.17 -2.27 10.11 22.36 0.23 -2.05 16 8 C 0.08 1.39 11.18 84.67 0.95 2.34 16 9 N -0.49 -10.82 7.23 -183.89 -1.33 -12.15 16 10 N -0.61 -17.68 2.70 -844.87 -2.28 -19.95 16 11 C 0.09 2.04 8.60 127.77 1.10 3.13 16 12 C 0.69 26.94 8.09 179.05 1.45 28.39 16 13 O -0.63 -29.70 13.28 -3.97 -0.05 -29.75 16 14 N -0.66 -25.23 5.17 -316.78 -1.64 -26.87 16 15 C 0.01 0.58 6.25 38.56 0.24 0.82 16 16 C -0.10 -4.90 9.90 22.13 0.22 -4.68 16 17 C -0.19 -10.08 8.74 22.48 0.20 -9.88 16 18 C 0.08 4.73 5.57 -21.28 -0.12 4.61 16 19 C -0.51 -28.38 8.94 23.39 0.21 -28.17 16 20 H 0.07 4.09 8.01 -2.91 -0.02 4.07 16 21 C 0.05 2.63 4.77 85.24 0.41 3.04 16 22 N -0.80 -41.55 11.78 21.82 0.26 -41.30 16 23 Si 0.97 38.29 29.66 68.60 2.03 40.32 16 24 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 25 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 26 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 27 C -0.24 -13.39 9.74 22.48 0.22 -13.17 16 28 C -0.08 -3.93 8.59 22.13 0.19 -3.74 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.17 6.66 -2.39 -0.02 1.15 16 32 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 34 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 35 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.07 1.52 6.95 -2.39 -0.02 1.50 16 37 H 0.06 1.23 6.32 -2.39 -0.02 1.22 16 38 H 0.09 1.53 6.43 -2.39 -0.02 1.52 16 39 H 0.41 12.58 6.52 -92.71 -0.60 11.98 16 40 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 41 H 0.10 5.39 6.53 -2.91 -0.02 5.37 16 42 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 43 H 0.09 4.92 8.06 -2.91 -0.02 4.89 16 44 H 0.10 5.21 6.44 -2.91 -0.02 5.19 16 Total: -1.00 -72.87 363.18 4.19 -68.69 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: 0.43 Total: 38.44 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: 6.77 Total: -17.42 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -4.99 Total: -100.27 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.05 Total: -29.75 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -72.87 4.19 -68.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068528846.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.318 kcal (2) G-P(sol) polarization free energy of solvation -72.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds