Wall clock time and date at job start Tue Mar 31 2020 14:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.78784 * 2 1 4 4 C 1.53255 * 109.62882 * 120.48502 * 2 1 3 5 5 N 1.46472 * 109.85787 * 57.70594 * 4 2 1 6 6 C 1.46894 * 110.99857 * 197.76544 * 5 4 2 7 7 C 1.50698 * 109.47384 * 64.02012 * 6 5 4 8 8 O 1.21289 * 120.00043 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00359 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00037 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47010 * 90.00127 * 10 9 7 12 12 H 1.07993 * 120.00499 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99532 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99642 * 180.02562 * 13 11 10 15 15 Si 1.86792 * 120.00281 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47130 * 90.00000 * 15 13 11 17 17 H 1.48499 * 109.47516 * 209.99918 * 15 13 11 18 18 H 1.48504 * 109.47308 * 330.00200 * 15 13 11 19 19 C 1.46501 * 119.99742 * 359.97438 * 9 7 6 20 20 C 1.53003 * 109.47059 * 89.99910 * 19 9 7 21 21 C 1.47198 * 109.46776 * 179.97438 * 20 19 9 22 22 N 8.74107 * 108.23641 * 126.70232 * 2 1 3 23 23 C 1.46468 * 112.55785 * 72.65351 * 5 4 2 24 24 C 1.53245 * 109.86396 * 287.34302 * 23 5 4 25 25 H 1.09004 * 109.62934 * 302.29854 * 24 23 5 26 26 C 1.52995 * 109.79850 * 181.80705 * 24 23 5 27 27 S 1.81898 * 108.50557 * 62.00330 * 24 23 5 28 28 H 1.09004 * 109.47190 * 180.49660 * 1 2 3 29 29 H 1.08999 * 109.47696 * 300.49776 * 1 2 3 30 30 H 1.09006 * 109.47322 * 60.50177 * 1 2 3 31 31 H 1.09002 * 109.40350 * 177.82157 * 4 2 1 32 32 H 1.08998 * 109.40676 * 297.58813 * 4 2 1 33 33 H 1.08997 * 109.47277 * 184.01963 * 6 5 4 34 34 H 1.09006 * 109.47016 * 304.01692 * 6 5 4 35 35 H 1.09007 * 109.47081 * 210.00035 * 10 9 7 36 36 H 1.09004 * 109.47157 * 329.99456 * 10 9 7 37 37 H 0.96998 * 119.99919 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.46780 * 209.99850 * 19 9 7 39 39 H 1.08998 * 109.47148 * 330.00007 * 19 9 7 40 40 H 1.08999 * 109.47275 * 299.99636 * 20 19 9 41 41 H 1.08998 * 109.47061 * 60.00044 * 20 19 9 42 42 H 1.09005 * 109.40402 * 167.22453 * 23 5 4 43 43 H 1.08996 * 109.34071 * 47.42690 * 23 5 4 44 44 H 1.09000 * 109.47241 * 300.89194 * 26 24 23 45 45 H 1.09004 * 109.47293 * 60.88476 * 26 24 23 46 46 H 1.09000 * 109.47601 * 180.88881 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7323 1.2439 5 7 1.5187 -2.0990 1.2701 6 6 1.6324 -2.6812 2.6139 7 6 0.7710 -1.9015 3.5737 8 8 0.1263 -0.9537 3.1773 9 7 0.7179 -2.2567 4.8728 10 6 -0.1191 -1.4983 5.8058 11 6 -1.4999 -2.1005 5.8453 12 1 -1.7312 -2.9616 5.2360 13 6 -2.4682 -1.5519 6.6594 14 7 -3.6731 -2.0777 6.6942 15 14 -2.0681 -0.0629 7.7138 16 1 -2.3599 1.1771 6.9505 17 1 -2.8962 -0.0919 8.9461 18 1 -0.6299 -0.0898 8.0832 19 6 1.4971 -3.4011 5.3517 20 6 2.8790 -2.9242 5.8031 21 6 3.6616 -4.0740 6.2849 22 7 4.2654 -4.9618 6.6562 23 6 2.1485 -2.9628 0.2688 24 6 1.6503 -2.5866 -1.1307 25 1 0.5642 -2.6716 -1.1679 26 6 2.2745 -3.5189 -2.1709 27 16 2.1412 -0.8695 -1.4762 28 1 -0.3634 -1.0277 0.0089 29 1 -0.3634 0.5215 0.8854 30 1 -0.3634 0.5060 -0.8945 31 1 3.1341 -0.7639 1.2206 32 1 1.7181 -0.2013 2.1380 33 1 1.3010 -3.7193 2.5894 34 1 2.6712 -2.6391 2.9415 35 1 0.3221 -1.5352 6.8020 36 1 -0.1840 -0.4616 5.4755 37 1 -4.3544 -1.6916 7.2667 38 1 0.9809 -3.8661 6.1916 39 1 1.6085 -4.1273 4.5465 40 1 3.3952 -2.4591 4.9633 41 1 2.7676 -2.1980 6.6083 42 1 1.8948 -4.0024 0.4763 43 1 3.2304 -2.8382 0.3138 44 1 3.3606 -3.4372 -2.1268 45 1 1.9788 -4.5469 -1.9616 46 1 1.9291 -3.2368 -3.1655 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072769456.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:47 Heat of formation + Delta-G solvation = 2.977276 kcal Electronic energy + Delta-G solvation = -26293.926711 eV Core-core repulsion = 22731.269615 eV Total energy + Delta-G solvation = -3562.657097 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.88955 -37.99466 -36.91365 -35.36427 -33.92985 -33.04899 -32.57788 -31.08453 -28.95558 -27.15303 -26.89445 -24.31672 -23.95550 -22.16988 -21.98098 -20.59126 -18.60774 -17.79291 -17.13225 -16.88401 -16.64981 -16.03102 -15.47076 -15.08090 -14.92196 -14.75575 -14.53873 -14.42015 -14.03706 -13.83957 -13.55712 -13.31515 -12.74989 -12.68819 -12.59791 -12.54537 -12.36122 -12.28574 -12.22116 -11.92548 -11.81663 -11.64259 -11.45749 -11.32424 -11.16038 -11.11993 -10.90382 -10.60837 -10.49759 -10.23678 -9.71856 -9.59066 -9.11532 -8.65562 -8.38865 -7.94788 -7.71124 -6.14851 -4.14605 1.73650 2.47847 2.60693 2.69445 3.12365 3.22573 3.26734 3.29405 3.34469 3.72602 4.09684 4.32825 4.55977 4.70423 4.78737 4.86636 4.90576 4.97040 5.03742 5.04402 5.15992 5.18308 5.26622 5.27783 5.34571 5.36049 5.44716 5.50873 5.66432 5.67896 5.76984 5.81982 5.90994 5.94617 6.08350 6.17347 6.50051 6.61858 6.75179 6.85386 6.96610 7.14478 7.45696 7.52094 8.02204 8.38452 8.78985 8.89697 9.44500 10.98449 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.010920 B = 0.004031 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.477373 B = 6944.069041 C = 8655.797519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 H 0.105 0.895 4 C 0.058 3.942 5 N -0.531 5.531 6 C 0.040 3.960 7 C 0.510 3.490 8 O -0.510 6.510 9 N -0.593 5.593 10 C 0.217 3.783 11 C -0.531 4.531 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.895 5.895 15 Si 0.875 3.125 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.117 3.883 20 C -0.050 4.050 21 C 0.215 3.785 22 N -0.441 5.441 23 C 0.061 3.939 24 C -0.042 4.042 25 H 0.098 0.902 26 C -0.132 4.132 27 S -0.286 6.286 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.031 0.969 36 H 0.039 0.961 37 H 0.265 0.735 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.459 -0.244 -11.844 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.163 4.163 3 H 0.123 0.877 4 C -0.071 4.071 5 N -0.255 5.255 6 C -0.091 4.091 7 C 0.296 3.704 8 O -0.385 6.385 9 N -0.326 5.326 10 C 0.097 3.903 11 C -0.569 4.569 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.702 3.298 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.009 4.009 20 C -0.092 4.092 21 C -0.103 4.103 22 N -0.118 5.118 23 C -0.068 4.068 24 C -0.171 4.171 25 H 0.116 0.884 26 C -0.191 4.191 27 S -0.059 6.059 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.134 0.866 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.872 -0.563 -12.432 19.392 hybrid contribution -0.034 0.516 1.750 1.825 sum 14.838 -0.046 -10.682 18.283 Atomic orbital electron populations 1.21830 0.91637 1.03705 1.01695 1.23213 1.00350 1.00044 0.92650 0.87670 1.22400 0.96192 0.89086 0.99452 1.60633 1.59063 1.02095 1.03700 1.22043 0.98615 0.99736 0.88686 1.20171 0.82764 0.85160 0.82337 1.90667 1.43208 1.28546 1.76031 1.47896 1.45163 1.30901 1.08590 1.19703 0.90593 0.92668 0.87364 1.21291 0.93624 1.15987 1.26037 0.90663 1.24854 0.94765 0.96737 0.96538 1.69890 1.03066 1.41046 1.39318 0.86885 0.78753 0.83914 0.80284 1.19919 1.21138 1.19042 1.21327 0.88812 0.89102 1.01690 1.19890 0.94767 0.91257 1.03257 1.29050 0.93611 0.94428 0.93253 1.81228 1.10123 1.11057 1.09421 1.22312 0.96833 0.97276 0.90379 1.23153 1.03892 0.93167 0.96919 0.88404 1.21589 1.01200 0.98300 0.97962 1.86771 1.78601 1.07242 1.33306 0.91175 0.90958 0.93137 0.94403 0.87512 0.87947 0.92369 0.95106 0.94302 0.92504 0.88441 0.90431 0.87705 0.86643 0.89744 0.93521 0.91840 0.91090 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.98 37.16 0.33 -1.44 16 2 C -0.03 -0.41 3.49 -26.60 -0.09 -0.50 16 3 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.06 0.71 4.42 -3.92 -0.02 0.69 16 5 N -0.53 -6.47 3.33 -236.48 -0.79 -7.26 16 6 C 0.04 0.47 4.00 -4.98 -0.02 0.45 16 7 C 0.51 8.31 7.21 -10.99 -0.08 8.23 16 8 O -0.51 -10.35 13.91 5.55 0.08 -10.27 16 9 N -0.59 -9.68 2.46 -175.05 -0.43 -10.11 16 10 C 0.22 4.54 4.23 -5.20 -0.02 4.52 16 11 C -0.53 -13.95 9.94 -34.44 -0.34 -14.29 16 12 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 14 N -0.90 -26.47 13.96 55.43 0.77 -25.69 16 15 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 16 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.27 -5.62 6.54 56.52 0.37 -5.25 16 19 C 0.12 1.38 5.17 -4.04 -0.02 1.36 16 20 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 21 C 0.21 2.33 15.43 -20.76 -0.32 2.01 16 22 N -0.44 -6.05 18.54 42.15 0.78 -5.27 16 23 C 0.06 0.61 4.73 -3.93 -0.02 0.59 16 24 C -0.04 -0.43 2.97 -26.61 -0.08 -0.51 16 25 H 0.10 1.11 7.56 -51.93 -0.39 0.72 16 26 C -0.13 -1.04 9.24 37.16 0.34 -0.70 16 27 S -0.29 -3.37 21.18 -107.50 -2.28 -5.65 16 28 H 0.07 1.06 6.68 -51.93 -0.35 0.71 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.43 7.91 -51.93 -0.41 0.02 16 32 H 0.11 1.53 5.61 -51.93 -0.29 1.24 16 33 H 0.10 1.07 7.10 -51.93 -0.37 0.70 16 34 H 0.06 0.52 7.18 -51.93 -0.37 0.15 16 35 H 0.03 0.60 7.13 -51.93 -0.37 0.23 16 36 H 0.04 0.88 6.85 -51.93 -0.36 0.52 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.10 1.27 8.07 -51.93 -0.42 0.85 16 39 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 40 H 0.10 0.71 7.22 -51.93 -0.37 0.34 16 41 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.72 7.76 -51.93 -0.40 0.32 16 43 H 0.05 0.44 7.91 -51.93 -0.41 0.03 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -32.44 379.68 -8.82 -41.26 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.40 Total: 0.03 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.61 Total: 1.71 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.34 Total: -48.33 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -2.28 Total: -5.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.44 -8.82 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072769456.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.238 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds