Wall clock time and date at job start Tue Mar 31 2020 13:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46827 * 2 1 4 4 H 1.08998 * 109.47594 * 305.53963 * 3 2 1 5 5 N 1.46902 * 109.46994 * 185.54012 * 3 2 1 6 6 C 1.46898 * 110.99733 * 85.40759 * 5 3 2 7 7 H 1.08997 * 109.47228 * 326.91259 * 6 5 3 8 8 C 1.52999 * 109.47236 * 86.91839 * 6 5 3 9 9 C 1.50700 * 109.47102 * 206.91587 * 6 5 3 10 10 O 1.21287 * 120.00162 * 0.02562 * 9 6 5 11 11 N 1.34775 * 120.00335 * 179.97438 * 9 6 5 12 12 C 1.46500 * 119.99914 * 0.02562 * 11 9 6 13 13 C 1.46499 * 120.00044 * 180.02562 * 11 9 6 14 14 C 1.50698 * 109.47209 * 90.00101 * 13 11 9 15 15 H 1.08002 * 120.00456 * 359.97438 * 14 13 11 16 16 C 1.37876 * 120.00167 * 179.97438 * 14 13 11 17 17 N 1.31513 * 119.99953 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00188 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47088 * 59.99810 * 18 16 14 20 20 H 1.48500 * 109.47023 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.46952 * 299.99745 * 18 16 14 22 22 C 1.50703 * 109.47387 * 65.54511 * 3 2 1 23 23 N 1.29021 * 124.91327 * 255.00288 * 22 3 2 24 24 C 1.31791 * 117.12566 * 179.97438 * 23 22 3 25 25 C 1.50692 * 122.75111 * 180.02562 * 24 23 22 26 26 C 1.33638 * 114.49754 * 0.02562 * 24 23 22 27 27 S 1.70979 * 124.91642 * 74.68935 * 22 3 2 28 28 H 1.09004 * 109.46740 * 174.46629 * 1 2 3 29 29 H 1.09003 * 109.46834 * 54.47374 * 1 2 3 30 30 H 1.08992 * 109.47310 * 294.46928 * 1 2 3 31 31 H 1.09008 * 109.47304 * 119.99715 * 2 1 3 32 32 H 1.08993 * 109.47970 * 240.00025 * 2 1 3 33 33 H 1.00908 * 111.00210 * 209.35679 * 5 3 2 34 34 H 1.09000 * 109.47172 * 179.97438 * 8 6 5 35 35 H 1.08994 * 109.47180 * 299.99888 * 8 6 5 36 36 H 1.09000 * 109.47243 * 60.00041 * 8 6 5 37 37 H 1.08997 * 109.47086 * 90.00190 * 12 11 9 38 38 H 1.08997 * 109.47009 * 210.00061 * 12 11 9 39 39 H 1.09004 * 109.47305 * 330.00269 * 12 11 9 40 40 H 1.09005 * 109.46797 * 209.99525 * 13 11 9 41 41 H 1.08991 * 109.47375 * 329.99819 * 13 11 9 42 42 H 0.97002 * 120.00158 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.47459 * 90.00167 * 25 24 23 44 44 H 1.08999 * 109.47099 * 210.00166 * 25 24 23 45 45 H 1.08999 * 109.47340 * 330.00282 * 25 24 23 46 46 H 1.07994 * 126.03770 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5978 1.9842 -0.8362 5 7 3.5028 1.4447 -0.1337 6 6 3.9024 1.3797 -1.5458 7 1 3.1760 0.7873 -2.1021 8 6 3.9581 2.7945 -2.1257 9 6 5.2619 0.7386 -1.6542 10 8 5.8408 0.3715 -0.6536 11 7 5.8342 0.5722 -2.8630 12 6 5.1348 1.0151 -4.0717 13 6 7.1555 -0.0515 -2.9683 14 6 6.9967 -1.5426 -3.1183 15 1 6.0101 -1.9818 -3.1333 16 6 8.1108 -2.3462 -3.2365 17 7 9.3122 -1.8114 -3.2188 18 14 7.9138 -4.1944 -3.4232 19 1 7.1286 -4.4872 -4.6492 20 1 9.2533 -4.8266 -3.5298 21 1 7.2031 -4.7386 -2.2384 22 6 1.6528 2.1122 1.2934 23 7 0.7076 2.9812 1.4209 24 6 0.4994 3.4698 2.6271 25 6 -0.5703 4.4900 2.9199 26 6 1.3147 2.9864 3.5692 27 16 2.3974 1.8249 2.8054 28 1 -0.3633 -1.0229 -0.0991 29 1 -0.3633 0.5972 -0.8364 30 1 -0.3633 0.4256 0.9353 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 3.9062 2.2510 0.3195 34 1 4.2550 2.7463 -3.1734 35 1 2.9748 3.2582 -2.0474 36 1 4.6846 3.3869 -1.5694 37 1 5.4040 2.0487 -4.2891 38 1 5.4217 0.3809 -4.9104 39 1 4.0584 0.9454 -3.9148 40 1 7.6774 0.3476 -3.8381 41 1 7.7317 0.1637 -2.0685 42 1 10.0960 -2.3768 -3.3015 43 1 -1.4973 3.9797 3.1814 44 1 -0.2545 5.1189 3.7523 45 1 -0.7329 5.1094 2.0379 46 1 1.3076 3.2560 4.6149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112544320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:47 Heat of formation + Delta-G solvation = 13.167851 kcal Electronic energy + Delta-G solvation = -25760.170346 eV Core-core repulsion = 22197.955145 eV Total energy + Delta-G solvation = -3562.215200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.20122 -39.31505 -37.12159 -34.75605 -33.82277 -32.50106 -31.82605 -29.99232 -27.89509 -27.56169 -26.35685 -25.81870 -23.91800 -23.74603 -22.00086 -20.74743 -19.84698 -18.55750 -17.77953 -16.69165 -16.42087 -15.96818 -15.43746 -15.20654 -15.18817 -14.50925 -14.31336 -14.25148 -14.00895 -13.60238 -13.44464 -13.12352 -13.02047 -12.71277 -12.67687 -12.43032 -12.26784 -12.12235 -11.92840 -11.76325 -11.45999 -11.36265 -11.35126 -11.25884 -11.08630 -10.90982 -10.82732 -10.52605 -10.11929 -9.77493 -9.60061 -9.51673 -8.92938 -8.83547 -8.39920 -8.32749 -7.57304 -6.00773 -4.05269 0.54111 1.25983 1.70297 2.57588 3.34217 3.38726 3.40796 3.48159 3.52366 3.95962 4.30546 4.48725 4.64106 4.91348 4.92097 4.99657 5.01114 5.10461 5.13239 5.20088 5.30221 5.32545 5.34471 5.35092 5.44176 5.55150 5.62606 5.66328 5.74271 5.76316 5.91639 5.94686 5.98745 6.02797 6.07631 6.23415 6.27292 6.77186 7.12341 7.23199 7.48660 7.59817 7.59971 7.96114 8.27568 8.48753 8.95040 9.20200 9.59842 11.07224 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.019466 B = 0.002857 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.056851 B = 9798.864372 C =10042.532118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.164 3.836 4 H 0.075 0.925 5 N -0.657 5.657 6 C 0.069 3.931 7 H 0.101 0.899 8 C -0.191 4.191 9 C 0.511 3.489 10 O -0.519 6.519 11 N -0.605 5.605 12 C 0.082 3.918 13 C 0.247 3.753 14 C -0.524 4.524 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.047 3.953 23 N -0.470 5.470 24 C 0.062 3.938 25 C -0.077 4.077 26 C -0.280 4.280 27 S 0.174 5.826 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.348 0.652 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.031 0.969 41 H 0.043 0.957 42 H 0.263 0.737 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.628 12.111 7.917 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.052 3.948 4 H 0.093 0.907 5 N -0.289 5.289 6 C -0.044 4.044 7 H 0.119 0.881 8 C -0.250 4.250 9 C 0.296 3.704 10 O -0.393 6.393 11 N -0.339 5.339 12 C -0.062 4.062 13 C 0.128 3.872 14 C -0.563 4.563 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.231 4.231 23 N -0.186 5.186 24 C -0.071 4.071 25 C -0.136 4.136 26 C -0.420 4.420 27 S 0.430 5.570 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.168 0.832 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.488 10.677 8.425 22.951 hybrid contribution -0.908 0.498 -0.266 1.070 sum -19.396 11.175 8.159 23.826 Atomic orbital electron populations 1.21737 0.95338 1.01652 1.01852 1.21607 0.95301 0.94044 1.04083 1.20158 0.88762 0.95747 0.90178 0.90685 1.60294 1.05930 1.48874 1.13838 1.21543 0.97389 0.96660 0.88856 0.88148 1.22696 1.02271 0.96240 1.03780 1.20035 0.86545 0.80019 0.83838 1.90671 1.63599 1.49346 1.35725 1.48118 1.21304 1.59796 1.04636 1.21763 0.96133 0.98850 0.89449 1.19250 0.77508 0.92265 0.98154 1.21400 0.92836 0.91952 1.50143 0.92550 1.24932 0.95072 0.98899 0.95219 1.69922 0.97586 1.35697 1.50302 0.86571 0.77142 0.85150 0.78629 1.20301 1.21224 1.20146 1.27003 0.96885 0.98689 1.00500 1.66135 1.17466 1.10715 1.24266 1.20262 0.99413 1.00258 0.87141 1.20326 0.95167 0.95697 1.02420 1.27004 1.03508 1.06320 1.05175 1.84484 1.33685 1.37595 1.01258 0.92329 0.92548 0.93146 0.90797 0.90313 0.83190 0.89808 0.92178 0.91932 0.93603 0.90887 0.92526 0.95128 0.93895 0.92710 0.90823 0.90885 0.90720 0.80871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.64 37.16 0.36 -1.16 16 2 C -0.11 -1.32 5.61 -26.73 -0.15 -1.47 16 3 C 0.16 1.99 2.40 -68.86 -0.17 1.83 16 4 H 0.08 0.87 7.26 -51.93 -0.38 0.49 16 5 N -0.66 -9.38 5.37 -102.17 -0.55 -9.93 16 6 C 0.07 1.01 1.97 -68.87 -0.14 0.87 16 7 H 0.10 1.34 6.39 -51.93 -0.33 1.01 16 8 C -0.19 -2.25 8.78 37.16 0.33 -1.92 16 9 C 0.51 10.49 7.14 -10.99 -0.08 10.42 16 10 O -0.52 -13.12 16.01 5.55 0.09 -13.03 16 11 N -0.60 -12.63 2.86 -182.96 -0.52 -13.16 16 12 C 0.08 1.26 8.80 59.85 0.53 1.79 16 13 C 0.25 6.48 5.16 -5.20 -0.03 6.45 16 14 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 15 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 17 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 18 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.05 0.57 5.08 -13.46 -0.07 0.50 16 23 N -0.47 -5.77 10.53 -8.06 -0.08 -5.86 16 24 C 0.06 0.66 6.74 -84.23 -0.57 0.09 16 25 C -0.08 -0.56 10.31 36.00 0.37 -0.19 16 26 C -0.28 -2.73 11.13 29.12 0.32 -2.41 16 27 S 0.17 1.97 22.88 -107.50 -2.46 -0.48 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.55 7.58 -51.93 -0.39 0.15 16 31 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 32 H 0.08 0.97 7.43 -51.93 -0.39 0.59 16 33 H 0.35 4.92 7.96 -39.29 -0.31 4.60 16 34 H 0.08 0.92 4.53 -51.93 -0.24 0.69 16 35 H 0.06 0.61 7.58 -51.93 -0.39 0.21 16 36 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 37 H 0.05 0.60 6.95 -51.93 -0.36 0.24 16 38 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 39 H 0.06 0.70 6.01 -51.93 -0.31 0.39 16 40 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 41 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -33.86 385.80 -8.96 -42.82 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.25 Total: 1.70 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 0.29 Total: 1.19 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.42 Total: -54.99 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.46 Total: -0.48 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.86 -8.96 -42.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112544320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.985 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds