Wall clock time and date at job start Tue Mar 31 2020 13:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46827 * 2 1 4 4 H 1.08998 * 109.47594 * 305.53963 * 3 2 1 5 5 N 1.46902 * 109.46994 * 185.54012 * 3 2 1 6 6 C 1.46898 * 110.99733 * 85.40759 * 5 3 2 7 7 H 1.08997 * 109.47228 * 326.91259 * 6 5 3 8 8 C 1.52999 * 109.47236 * 86.91839 * 6 5 3 9 9 C 1.50700 * 109.47102 * 206.91587 * 6 5 3 10 10 O 1.21287 * 120.00162 * 0.02562 * 9 6 5 11 11 N 1.34775 * 120.00335 * 179.97438 * 9 6 5 12 12 C 1.46500 * 119.99914 * 0.02562 * 11 9 6 13 13 C 1.46499 * 120.00044 * 180.02562 * 11 9 6 14 14 C 1.50698 * 109.47209 * 90.00101 * 13 11 9 15 15 H 1.08002 * 120.00456 * 359.97438 * 14 13 11 16 16 C 1.37876 * 120.00167 * 179.97438 * 14 13 11 17 17 N 1.31513 * 119.99953 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00188 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47088 * 59.99810 * 18 16 14 20 20 H 1.48500 * 109.47023 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.46952 * 299.99745 * 18 16 14 22 22 C 1.50703 * 109.47387 * 65.54511 * 3 2 1 23 23 N 1.29021 * 124.91327 * 255.00288 * 22 3 2 24 24 C 1.31791 * 117.12566 * 179.97438 * 23 22 3 25 25 C 1.50692 * 122.75111 * 180.02562 * 24 23 22 26 26 C 1.33638 * 114.49754 * 0.02562 * 24 23 22 27 27 S 1.70979 * 124.91642 * 74.68935 * 22 3 2 28 28 H 1.09004 * 109.46740 * 174.46629 * 1 2 3 29 29 H 1.09003 * 109.46834 * 54.47374 * 1 2 3 30 30 H 1.08992 * 109.47310 * 294.46928 * 1 2 3 31 31 H 1.09008 * 109.47304 * 119.99715 * 2 1 3 32 32 H 1.08993 * 109.47970 * 240.00025 * 2 1 3 33 33 H 1.00908 * 111.00210 * 209.35679 * 5 3 2 34 34 H 1.09000 * 109.47172 * 179.97438 * 8 6 5 35 35 H 1.08994 * 109.47180 * 299.99888 * 8 6 5 36 36 H 1.09000 * 109.47243 * 60.00041 * 8 6 5 37 37 H 1.08997 * 109.47086 * 90.00190 * 12 11 9 38 38 H 1.08997 * 109.47009 * 210.00061 * 12 11 9 39 39 H 1.09004 * 109.47305 * 330.00269 * 12 11 9 40 40 H 1.09005 * 109.46797 * 209.99525 * 13 11 9 41 41 H 1.08991 * 109.47375 * 329.99819 * 13 11 9 42 42 H 0.97002 * 120.00158 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.47459 * 90.00167 * 25 24 23 44 44 H 1.08999 * 109.47099 * 210.00166 * 25 24 23 45 45 H 1.08999 * 109.47340 * 330.00282 * 25 24 23 46 46 H 1.07994 * 126.03770 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5978 1.9842 -0.8362 5 7 3.5028 1.4447 -0.1337 6 6 3.9024 1.3797 -1.5458 7 1 3.1760 0.7873 -2.1021 8 6 3.9581 2.7945 -2.1257 9 6 5.2619 0.7386 -1.6542 10 8 5.8408 0.3715 -0.6536 11 7 5.8342 0.5722 -2.8630 12 6 5.1348 1.0151 -4.0717 13 6 7.1555 -0.0515 -2.9683 14 6 6.9967 -1.5426 -3.1183 15 1 6.0101 -1.9818 -3.1333 16 6 8.1108 -2.3462 -3.2365 17 7 9.3122 -1.8114 -3.2188 18 14 7.9138 -4.1944 -3.4232 19 1 7.1286 -4.4872 -4.6492 20 1 9.2533 -4.8266 -3.5298 21 1 7.2031 -4.7386 -2.2384 22 6 1.6528 2.1122 1.2934 23 7 0.7076 2.9812 1.4209 24 6 0.4994 3.4698 2.6271 25 6 -0.5703 4.4900 2.9199 26 6 1.3147 2.9864 3.5692 27 16 2.3974 1.8249 2.8054 28 1 -0.3633 -1.0229 -0.0991 29 1 -0.3633 0.5972 -0.8364 30 1 -0.3633 0.4256 0.9353 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 3.9062 2.2510 0.3195 34 1 4.2550 2.7463 -3.1734 35 1 2.9748 3.2582 -2.0474 36 1 4.6846 3.3869 -1.5694 37 1 5.4040 2.0487 -4.2891 38 1 5.4217 0.3809 -4.9104 39 1 4.0584 0.9454 -3.9148 40 1 7.6774 0.3476 -3.8381 41 1 7.7317 0.1637 -2.0685 42 1 10.0960 -2.3768 -3.3015 43 1 -1.4973 3.9797 3.1814 44 1 -0.2545 5.1189 3.7523 45 1 -0.7329 5.1094 2.0379 46 1 1.3076 3.2560 4.6149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112544320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:46 Heat of formation + Delta-G solvation = -10.383626 kcal Electronic energy + Delta-G solvation = -25761.191614 eV Core-core repulsion = 22197.955145 eV Total energy + Delta-G solvation = -3563.236469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16031 -40.69475 -38.27763 -36.51656 -35.10569 -34.39283 -32.58918 -31.18171 -29.38499 -28.54246 -27.62654 -26.97323 -25.63533 -24.61658 -23.54352 -21.69286 -20.77288 -19.93653 -18.83139 -18.62465 -17.82898 -17.34041 -16.66150 -16.44049 -16.32085 -16.15089 -15.72000 -15.12024 -15.01914 -14.78661 -14.49397 -14.31382 -14.19545 -14.02533 -13.50402 -13.44974 -13.32382 -13.30790 -13.27530 -13.17227 -12.86871 -12.71034 -12.53433 -12.50122 -12.38027 -12.21817 -12.13345 -12.10579 -11.82793 -11.68369 -10.66242 -10.62123 -10.47807 -10.35075 -9.67102 -9.52040 -9.32087 -8.19876 -6.34516 -0.29412 0.42289 0.88330 1.37266 1.41992 1.48953 1.74955 1.93924 2.23164 2.41839 2.83701 3.09354 3.23079 3.69522 3.82307 3.98112 4.07175 4.09200 4.15542 4.29304 4.36158 4.39514 4.44361 4.49805 4.65239 4.72907 4.78013 4.79090 4.83816 4.85381 4.93976 4.96277 5.04465 5.10060 5.13753 5.20893 5.26015 5.33442 5.38085 5.59309 5.77235 5.91706 6.09639 6.14080 6.73758 6.74910 6.87473 7.31932 7.59871 8.86725 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.019466 B = 0.002857 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.056851 B = 9798.864372 C =10042.532118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.172 3.828 4 H 0.088 0.912 5 N -0.674 5.674 6 C 0.084 3.916 7 H 0.121 0.879 8 C -0.182 4.182 9 C 0.501 3.499 10 O -0.579 6.579 11 N -0.611 5.611 12 C 0.076 3.924 13 C 0.261 3.739 14 C -0.540 4.540 15 H 0.053 0.947 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.966 3.034 19 H -0.259 1.259 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.038 3.962 23 N -0.480 5.480 24 C 0.045 3.955 25 C -0.074 4.074 26 C -0.267 4.267 27 S 0.143 5.857 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.346 0.654 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.023 0.977 41 H -0.005 1.005 42 H 0.267 0.733 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.370 12.725 7.349 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.060 3.940 4 H 0.105 0.895 5 N -0.307 5.307 6 C -0.029 4.029 7 H 0.139 0.861 8 C -0.241 4.241 9 C 0.289 3.711 10 O -0.458 6.458 11 N -0.343 5.343 12 C -0.066 4.066 13 C 0.140 3.860 14 C -0.579 4.579 15 H 0.071 0.929 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.790 3.210 19 H -0.184 1.184 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.239 4.239 23 N -0.196 5.196 24 C -0.087 4.087 25 C -0.133 4.133 26 C -0.406 4.406 27 S 0.398 5.602 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.166 0.834 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.041 0.959 41 H 0.013 0.987 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -21.281 11.326 7.817 25.343 hybrid contribution -0.057 0.365 -0.027 0.370 sum -21.337 11.691 7.791 25.547 Atomic orbital electron populations 1.21654 0.93853 1.02352 1.01766 1.21596 0.96510 0.93834 1.03036 1.20100 0.87193 0.95931 0.90802 0.89467 1.60172 1.07547 1.49222 1.13727 1.21396 0.93534 0.98154 0.89783 0.86125 1.22641 1.03602 0.93884 1.03928 1.21175 0.88293 0.79029 0.82650 1.90634 1.65624 1.51894 1.37673 1.48120 1.19888 1.59346 1.06995 1.22095 0.97726 1.00075 0.86748 1.18705 0.80076 0.91946 0.95304 1.21681 0.92788 0.93225 1.50164 0.92899 1.25857 0.94697 1.03979 0.94699 1.70046 0.98383 1.37553 1.50967 0.85495 0.77536 0.78978 0.78973 1.18354 1.20411 1.20422 1.26929 0.97353 0.99227 1.00426 1.66155 1.17428 1.10700 1.25324 1.20798 1.00311 1.00891 0.86719 1.20419 0.94621 0.95147 1.03111 1.27300 1.02100 1.04917 1.06306 1.84617 1.34769 1.38829 1.01963 0.91450 0.91618 0.93929 0.92400 0.90804 0.83370 0.88612 0.89533 0.92915 0.90739 0.91670 0.88849 0.95898 0.98668 0.92465 0.89813 0.88850 0.90942 0.78204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.64 71.98 0.69 -1.92 16 2 C -0.11 -2.53 5.61 30.59 0.17 -2.36 16 3 C 0.17 3.96 2.40 44.17 0.11 4.06 16 4 H 0.09 1.79 7.26 -2.39 -0.02 1.77 16 5 N -0.67 -18.99 5.37 -477.16 -2.56 -21.55 16 6 C 0.08 2.36 1.97 44.17 0.09 2.44 16 7 H 0.12 2.89 6.39 -2.39 -0.02 2.88 16 8 C -0.18 -3.80 8.78 71.98 0.63 -3.17 16 9 C 0.50 20.88 7.14 87.66 0.63 21.51 16 10 O -0.58 -30.76 16.01 -3.05 -0.05 -30.80 16 11 N -0.61 -25.73 2.86 -851.14 -2.43 -28.17 16 12 C 0.08 2.17 8.80 127.77 1.12 3.29 16 13 C 0.26 14.25 5.16 85.63 0.44 14.70 16 14 C -0.54 -31.47 9.39 25.60 0.24 -31.23 16 15 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 16 C 0.01 0.38 5.46 84.65 0.46 0.84 16 17 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 18 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 19 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 C 0.04 0.90 5.08 88.52 0.45 1.35 16 23 N -0.48 -11.02 10.53 -179.40 -1.89 -12.91 16 24 C 0.04 0.86 6.74 41.52 0.28 1.14 16 25 C -0.07 -0.90 10.31 71.23 0.73 -0.16 16 26 C -0.27 -4.74 11.13 66.78 0.74 -4.00 16 27 S 0.14 3.22 22.88 -56.49 -1.29 1.93 16 28 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.87 7.58 -2.39 -0.02 0.85 16 31 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.07 1.75 7.43 -2.39 -0.02 1.73 16 33 H 0.35 9.83 7.96 -89.69 -0.71 9.12 16 34 H 0.10 1.77 4.53 -2.39 -0.01 1.76 16 35 H 0.09 1.41 7.58 -2.39 -0.02 1.39 16 36 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 37 H 0.07 1.74 6.95 -2.39 -0.02 1.72 16 38 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 39 H 0.09 2.00 6.01 -2.38 -0.01 1.98 16 40 H 0.02 1.26 8.07 -2.38 -0.02 1.24 16 41 H 0.00 -0.31 7.42 -2.39 -0.02 -0.32 16 42 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.09 0.74 8.12 -2.39 -0.02 0.72 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 46 H 0.20 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -77.15 385.80 1.15 -76.00 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.27 Total: 18.25 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 6.79 Total: 6.48 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -6.60 Total: -119.32 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.05 Total: -30.80 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.29 Total: 1.93 kcal Total: -77.15 1.15 -76.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112544320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.620 kcal (2) G-P(sol) polarization free energy of solvation -77.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds