Wall clock time and date at job start Tue Mar 31 2020 13:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 H 1.09004 * 109.46983 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47092 * 240.00114 * 3 2 1 6 6 C 1.50702 * 109.47223 * 64.99816 * 5 3 2 7 7 O 1.21289 * 120.00278 * 0.02562 * 6 5 3 8 8 N 1.34778 * 119.99849 * 180.02562 * 6 5 3 9 9 C 1.40161 * 119.99932 * 179.97438 * 8 6 5 10 10 C 1.40416 * 125.97191 * 359.72061 * 9 8 6 11 11 C 1.35241 * 107.86322 * 179.82564 * 10 9 8 12 12 N 1.34968 * 107.86216 * 0.42812 * 11 10 9 13 13 C 1.46497 * 125.97220 * 179.69291 * 12 11 10 14 14 C 1.50698 * 109.47285 * 125.01710 * 13 12 11 15 15 H 1.08004 * 119.99951 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00248 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00102 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00093 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47378 * 89.99545 * 18 16 14 20 20 H 1.48505 * 109.47042 * 209.99960 * 18 16 14 21 21 H 1.48504 * 109.46965 * 329.99698 * 18 16 14 22 22 N 1.31212 * 125.97486 * 180.02562 * 9 8 6 23 23 C 1.50696 * 109.47042 * 119.99701 * 3 2 1 24 24 C 1.38240 * 120.00010 * 59.73224 * 23 3 2 25 25 C 1.38228 * 119.99814 * 179.78340 * 24 23 3 26 26 C 1.38234 * 120.00339 * 0.43883 * 25 24 23 27 27 C 1.38235 * 119.99920 * 359.81417 * 26 25 24 28 28 C 1.38236 * 120.00004 * 359.97212 * 27 26 25 29 29 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 31 31 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47468 * 184.99766 * 5 3 2 33 33 H 1.09002 * 109.47118 * 305.00121 * 5 3 2 34 34 H 0.96994 * 120.00547 * 359.97438 * 8 6 5 35 35 H 1.07999 * 126.06197 * 359.97438 * 10 9 8 36 36 H 1.08005 * 126.06553 * 180.15394 * 11 10 9 37 37 H 1.09004 * 109.47101 * 245.01505 * 13 12 11 38 38 H 1.08998 * 109.47227 * 5.01497 * 13 12 11 39 39 H 0.96995 * 119.99921 * 179.97438 * 17 16 14 40 40 H 1.08000 * 119.99250 * 359.97438 * 24 23 3 41 41 H 1.08003 * 120.00026 * 180.26834 * 25 24 23 42 42 H 1.07998 * 120.00372 * 179.82707 * 26 25 24 43 43 H 1.07999 * 120.00126 * 180.02562 * 27 26 25 44 44 H 1.07998 * 120.00243 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0697 1.4300 -2.4766 7 8 0.8625 1.3999 -2.3633 8 7 2.6301 1.5027 -3.7002 9 6 1.8179 1.5429 -4.8417 10 6 0.4142 1.5091 -4.8568 11 6 0.0116 1.5712 -6.1464 12 7 1.1145 1.6321 -6.9220 13 6 1.1348 1.7045 -8.3850 14 6 1.9328 2.9074 -8.8175 15 1 2.3805 3.5533 -8.0766 16 6 2.0923 3.1831 -10.1589 17 7 1.5484 2.3958 -11.0612 18 14 3.0821 4.6738 -10.6950 19 1 4.5070 4.2891 -10.8589 20 1 2.5541 5.1800 -11.9874 21 1 2.9720 5.7376 -9.6646 22 7 2.2363 1.6131 -6.0834 23 6 2.9298 1.3850 1.2305 24 6 3.9053 0.4309 1.4521 25 6 4.7029 0.5067 2.5785 26 6 4.5191 1.5314 3.4880 27 6 3.5402 2.4825 3.2690 28 6 2.7454 2.4092 2.1403 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9352 0.0044 31 1 1.8501 -0.9353 -0.0004 32 1 3.5540 2.2879 -1.2057 33 1 3.5906 0.5105 -1.2952 34 1 3.5955 1.5272 -3.7909 35 1 -0.2296 1.4472 -3.9919 36 1 -1.0109 1.5677 -6.4942 37 1 1.5929 0.8009 -8.7872 38 1 0.1146 1.7918 -8.7587 39 1 1.6603 2.5900 -12.0049 40 1 4.0462 -0.3719 0.7435 41 1 5.4680 -0.2362 2.7495 42 1 5.1404 1.5890 4.3694 43 1 3.3968 3.2833 3.9793 44 1 1.9803 3.1520 1.9694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135129199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:23 Heat of formation + Delta-G solvation = 86.637051 kcal Electronic energy + Delta-G solvation = -25684.285726 eV Core-core repulsion = 21989.812438 eV Total energy + Delta-G solvation = -3694.473288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.73068 -39.97238 -39.03607 -35.90899 -34.60472 -33.35498 -31.64561 -31.20414 -31.04762 -29.75935 -29.27146 -26.71226 -25.07591 -23.07706 -22.89635 -21.78839 -21.35068 -20.23240 -19.61119 -19.33724 -17.45988 -16.80187 -16.59985 -16.37952 -15.71513 -15.53404 -15.28944 -15.06817 -14.67956 -14.29286 -14.05825 -13.72829 -13.70330 -13.58464 -13.25419 -12.92644 -12.66226 -12.37138 -12.26054 -12.09929 -11.89991 -11.71800 -11.52865 -11.18615 -11.03540 -10.89195 -10.83268 -10.40742 -10.25950 -9.98488 -9.66492 -9.48460 -9.20299 -9.18500 -8.96375 -8.63778 -8.11188 -7.44958 -6.24710 -4.29754 1.06170 1.12930 2.32966 2.41166 2.82057 2.95815 3.23398 3.29124 3.34363 3.51897 3.74997 3.89579 4.31453 4.43156 4.50212 4.71578 4.72992 4.78389 4.85213 4.95960 5.10389 5.14650 5.22367 5.24139 5.34208 5.44560 5.59395 5.67844 5.71371 5.81973 5.83142 5.92022 6.19090 6.24149 6.30333 6.37928 6.50852 6.60656 6.64378 6.73628 6.81631 6.86595 7.05267 7.44638 7.59545 7.71216 7.89306 8.05354 8.31376 8.65093 8.80247 9.35839 10.83996 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.002147 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.488557 B =13035.482714 C =13810.217989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.156 4.156 3 C -0.002 4.002 4 H 0.092 0.908 5 C -0.126 4.126 6 C 0.518 3.482 7 O -0.509 6.509 8 N -0.634 5.634 9 C 0.258 3.742 10 C -0.287 4.287 11 C 0.050 3.950 12 N -0.319 5.319 13 C 0.258 3.742 14 C -0.528 4.528 15 H 0.068 0.932 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.908 3.092 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.273 1.273 22 N -0.306 5.306 23 C -0.070 4.070 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.119 4.119 28 C -0.114 4.114 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.410 0.590 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.267 0.733 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.261 -3.682 27.077 27.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.174 4.174 3 C -0.021 4.021 4 H 0.110 0.890 5 C -0.166 4.166 6 C 0.303 3.697 7 O -0.382 6.382 8 N -0.282 5.282 9 C 0.005 3.995 10 C -0.318 4.318 11 C -0.100 4.100 12 N -0.101 5.101 13 C 0.141 3.859 14 C -0.566 4.566 15 H 0.087 0.913 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.735 3.265 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.197 1.197 22 N -0.138 5.138 23 C -0.070 4.070 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.137 4.137 28 C -0.132 4.132 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.245 0.755 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.373 -3.667 26.068 26.540 hybrid contribution 0.390 0.694 -0.108 0.803 sum 3.762 -2.973 25.960 26.400 Atomic orbital electron populations 1.23732 0.95788 1.01615 0.98003 1.22545 0.95974 0.96466 1.02376 1.19062 0.95201 0.98015 0.89779 0.89015 1.21680 0.98471 1.05001 0.91489 1.20575 0.89313 0.76239 0.83535 1.90647 1.14482 1.47239 1.85868 1.42558 1.09688 1.72698 1.03217 1.19136 0.90438 1.03242 0.86722 1.21521 0.93067 1.19998 0.97228 1.22566 0.93853 1.02454 0.91149 1.49069 1.01381 1.51560 1.08118 1.19738 0.99480 0.99164 0.67552 1.21252 1.33317 1.09780 0.92268 0.91331 1.24952 0.95728 0.97331 0.96130 1.69917 1.44165 1.37841 1.01432 0.86321 0.80068 0.82144 0.77924 1.20333 1.20979 1.19733 1.77323 1.10413 1.27976 0.98051 1.19795 0.96155 0.95087 0.95967 1.21028 0.95604 0.98695 0.97757 1.21146 0.99479 0.98465 0.94646 1.21148 0.98536 0.95283 0.99459 1.21144 0.95998 0.99016 0.97548 1.21106 0.99664 0.98125 0.94311 0.88909 0.88387 0.87818 0.88250 0.88404 0.75548 0.82266 0.81585 0.93750 0.92555 0.92329 0.86026 0.86156 0.86309 0.86151 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 13.22 29.01 0.38 -1.25 16 2 C -0.16 -1.55 7.40 -36.03 -0.27 -1.81 16 3 C 0.00 -0.02 1.99 -92.93 -0.18 -0.20 16 4 H 0.09 0.93 7.33 -51.93 -0.38 0.55 16 5 C -0.13 -1.13 4.91 -27.88 -0.14 -1.26 16 6 C 0.52 6.89 7.55 -10.98 -0.08 6.81 16 7 O -0.51 -8.12 11.30 5.55 0.06 -8.05 16 8 N -0.63 -9.48 5.45 -11.13 -0.06 -9.54 16 9 C 0.26 5.12 8.11 -154.39 -1.25 3.87 16 10 C -0.29 -5.64 9.61 -39.83 -0.38 -6.03 16 11 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 12 N -0.32 -7.46 3.67 -62.56 -0.23 -7.69 16 13 C 0.26 6.59 6.26 -5.20 -0.03 6.55 16 14 C -0.53 -14.72 9.24 -34.44 -0.32 -15.04 16 15 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.90 -25.36 13.29 55.43 0.74 -24.62 16 18 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 22 N -0.31 -7.06 12.42 31.44 0.39 -6.67 16 23 C -0.07 -0.59 4.77 -104.62 -0.50 -1.09 16 24 C -0.11 -0.88 8.86 -39.58 -0.35 -1.23 16 25 C -0.12 -0.87 10.05 -39.59 -0.40 -1.26 16 26 C -0.13 -0.90 10.05 -39.58 -0.40 -1.30 16 27 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 28 C -0.11 -0.94 9.67 -39.58 -0.38 -1.32 16 29 H 0.09 0.89 8.06 -52.48 -0.42 0.47 16 30 H 0.10 1.07 7.83 -52.49 -0.41 0.66 16 31 H 0.10 0.93 8.00 -52.49 -0.42 0.51 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.70 7.59 -51.93 -0.39 0.30 16 34 H 0.41 4.98 8.82 -40.82 -0.36 4.62 16 35 H 0.16 3.02 5.92 -52.49 -0.31 2.71 16 36 H 0.17 2.73 8.06 -52.48 -0.42 2.30 16 37 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 39 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 40 H 0.12 0.79 7.60 -52.49 -0.40 0.39 16 41 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.12 0.88 7.95 -52.49 -0.42 0.46 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -32.63 377.39 -9.44 -42.08 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.02 Total: 5.90 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -4.99 Total: -13.45 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.84 Total: -48.52 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.06 Total: -8.05 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.63 -9.44 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135129199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.712 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds