Wall clock time and date at job start Tue Mar 31 2020 13:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47347 * 2 1 4 4 C 1.53003 * 109.47149 * 239.99698 * 2 1 3 5 5 S 1.81403 * 109.47157 * 120.00069 * 2 1 3 6 6 C 1.81405 * 102.99916 * 59.99759 * 5 2 1 7 7 C 1.53000 * 109.47100 * 179.97438 * 6 5 2 8 8 C 1.52996 * 109.47389 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47220 * 180.02562 * 8 7 6 10 10 O 1.21290 * 120.00012 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99736 * 179.97438 * 9 8 7 12 12 C 1.40159 * 119.99983 * 179.97438 * 11 9 8 13 13 C 1.40409 * 125.97033 * 0.02562 * 12 11 9 14 14 C 1.35241 * 107.86602 * 179.73843 * 13 12 11 15 15 N 1.34966 * 107.86079 * 0.39163 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.87198 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31219 * 125.97718 * 179.97438 * 12 11 9 26 26 H 1.09003 * 109.47254 * 299.99859 * 1 2 3 27 27 H 1.08996 * 109.46956 * 59.99818 * 1 2 3 28 28 H 1.09003 * 109.47463 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46779 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46922 * 299.99689 * 3 2 1 31 31 H 1.09000 * 109.47183 * 60.00255 * 3 2 1 32 32 H 1.09003 * 109.47045 * 300.00387 * 4 2 1 33 33 H 1.09010 * 109.46965 * 60.00423 * 4 2 1 34 34 H 1.08996 * 109.47594 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47095 * 59.99967 * 6 5 2 36 36 H 1.08996 * 109.46990 * 300.00455 * 6 5 2 37 37 H 1.09002 * 109.46562 * 59.99953 * 7 6 5 38 38 H 1.09003 * 109.47100 * 300.00515 * 7 6 5 39 39 H 1.09001 * 109.46879 * 60.00047 * 8 7 6 40 40 H 1.09006 * 109.47056 * 300.00623 * 8 7 6 41 41 H 0.97003 * 120.00166 * 0.02562 * 11 9 8 42 42 H 1.08002 * 126.06850 * 0.02562 * 13 12 11 43 43 H 1.08003 * 126.07024 * 180.26845 * 14 13 12 44 44 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 45 45 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 46 46 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 2.1346 -0.8552 1.4811 6 6 1.4374 -2.5205 1.3041 7 6 1.8634 -3.3810 2.4952 8 6 1.2748 -4.7854 2.3463 9 6 1.6938 -5.6328 3.5199 10 8 2.3940 -5.1598 4.3901 11 7 1.2898 -6.9158 3.6029 12 6 1.6799 -7.7042 4.6942 13 6 2.4852 -7.2877 5.7664 14 6 2.6253 -8.3346 6.6110 15 7 1.9443 -9.3784 6.0931 16 6 1.8341 -10.7135 6.6861 17 6 0.3794 -11.0729 6.8477 18 1 -0.3862 -10.3765 6.5392 19 6 0.0262 -12.2905 7.3895 20 7 0.9586 -13.1406 7.7602 21 14 -1.7768 -12.7362 7.5892 22 1 -1.8886 -14.0920 8.1848 23 1 -2.4352 -11.7479 8.4810 24 1 -2.4400 -12.7230 6.2606 25 7 1.3559 -8.9601 4.8928 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1299 -0.7210 -1.2495 35 1 1.8030 -2.9712 0.3814 36 1 0.3497 -2.4573 1.2714 37 1 1.4981 -2.9303 3.4181 38 1 2.9511 -3.4440 2.5274 39 1 1.6397 -5.2362 1.4234 40 1 0.1870 -4.7219 2.3143 41 1 0.7295 -7.2939 2.9072 42 1 2.9126 -6.3044 5.8962 43 1 3.1847 -8.3358 7.5349 44 1 2.3202 -10.7190 7.6617 45 1 2.3180 -11.4414 6.0349 46 1 1.8949 -12.9094 7.6563 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155251958.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:42 Heat of formation + Delta-G solvation = 16.868332 kcal Electronic energy + Delta-G solvation = -23908.317981 eV Core-core repulsion = 20346.263246 eV Total energy + Delta-G solvation = -3562.054735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77533 -39.41291 -36.74878 -35.11953 -34.60475 -33.67421 -31.00390 -29.41345 -28.85614 -27.88416 -27.58754 -26.14837 -23.45649 -22.63520 -21.35530 -20.85272 -20.29472 -19.60341 -17.20259 -17.19603 -16.63909 -16.31581 -16.28550 -15.53614 -15.08723 -14.85017 -14.71168 -14.70357 -14.15347 -13.96411 -13.79546 -13.26274 -13.11316 -12.98357 -12.88296 -12.58007 -12.43294 -12.24603 -12.14391 -12.06781 -11.82763 -11.69937 -11.57967 -11.19798 -11.14489 -11.13474 -10.82669 -10.47238 -10.17359 -10.09188 -10.05191 -9.63213 -9.01613 -8.59579 -8.22392 -7.99705 -7.54280 -6.59517 -4.33660 1.26843 2.20413 2.26166 2.71879 2.84427 3.36675 3.38246 3.57185 3.64090 3.76466 4.21838 4.22513 4.38747 4.42157 4.51328 4.55628 4.63717 4.94840 4.99775 5.02545 5.05863 5.14221 5.14650 5.21787 5.23852 5.29042 5.29373 5.30471 5.47435 5.55144 5.68851 5.69414 5.70054 5.74211 5.95043 6.18297 6.39733 6.49696 6.58364 6.73509 7.33158 7.45809 7.69016 7.81647 8.19804 8.32608 8.52642 8.60614 9.34599 10.78023 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.031377 B = 0.001714 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.152845 B =16331.239412 C =16830.306414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.037 4.037 3 C -0.128 4.128 4 C -0.144 4.144 5 S -0.249 6.249 6 C -0.087 4.087 7 C -0.089 4.089 8 C -0.130 4.130 9 C 0.518 3.482 10 O -0.516 6.516 11 N -0.632 5.632 12 C 0.257 3.743 13 C -0.285 4.285 14 C 0.050 3.950 15 N -0.317 5.317 16 C 0.249 3.751 17 C -0.608 4.608 18 H 0.063 0.937 19 C 0.023 3.977 20 N -0.904 5.904 21 Si 1.077 2.923 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.285 1.285 25 N -0.303 5.303 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.411 0.589 42 H 0.161 0.839 43 H 0.168 0.832 44 H 0.046 0.954 45 H 0.035 0.965 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.746 25.526 -17.737 31.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.186 4.186 4 C -0.203 4.203 5 S -0.020 6.020 6 C -0.235 4.235 7 C -0.128 4.128 8 C -0.172 4.172 9 C 0.304 3.696 10 O -0.390 6.390 11 N -0.280 5.280 12 C 0.004 3.996 13 C -0.316 4.316 14 C -0.099 4.099 15 N -0.099 5.099 16 C 0.131 3.869 17 C -0.647 4.647 18 H 0.081 0.919 19 C -0.182 4.182 20 N -0.540 5.540 21 Si 0.904 3.096 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.212 1.212 25 N -0.134 5.134 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.246 0.754 42 H 0.179 0.821 43 H 0.185 0.815 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.251 23.973 -16.166 28.916 hybrid contribution 0.390 1.064 -1.537 1.910 sum 0.641 25.037 -17.703 30.670 Atomic orbital electron populations 1.22134 0.92766 1.02483 1.02925 1.22685 0.98322 0.98499 0.95156 1.21655 1.01829 0.92479 1.02677 1.22136 1.02149 1.00051 0.95958 1.87033 1.70782 1.10993 1.33231 1.23446 1.03148 0.94585 1.02353 1.21053 1.02543 0.91931 0.97234 1.21607 1.03174 0.95309 0.97145 1.20620 0.80086 0.80939 0.87945 1.90659 1.36349 1.71722 1.40256 1.42541 1.51830 1.10831 1.22795 1.19146 0.99145 0.90939 0.90354 1.21542 1.11444 1.01862 0.96777 1.22573 0.99111 0.88160 1.00092 1.48785 1.35062 1.11408 1.14639 1.19764 1.00021 0.74603 0.92523 1.22102 0.90575 1.05636 1.46354 0.91858 1.25928 1.07071 0.92163 0.93018 1.70852 1.01597 1.37128 1.44387 0.83416 0.73138 0.76318 0.76733 1.20501 1.21236 1.21153 1.77343 1.22486 1.10059 1.03466 0.91313 0.91752 0.92401 0.91648 0.91230 0.91633 0.92405 0.91760 0.91327 0.89933 0.89909 0.89921 0.89940 0.88357 0.88321 0.75369 0.82134 0.81493 0.93605 0.94766 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.32 37.16 0.31 -0.46 16 2 C -0.04 -0.23 0.95 -90.62 -0.09 -0.31 16 3 C -0.13 -0.70 8.48 37.16 0.32 -0.39 16 4 C -0.14 -0.76 8.32 37.16 0.31 -0.45 16 5 S -0.25 -2.14 20.65 -107.50 -2.22 -4.36 16 6 C -0.09 -0.61 5.05 37.16 0.19 -0.42 16 7 C -0.09 -0.78 4.51 -26.73 -0.12 -0.90 16 8 C -0.13 -1.04 5.70 -27.89 -0.16 -1.20 16 9 C 0.52 6.89 7.80 -10.99 -0.09 6.81 16 10 O -0.52 -8.70 13.11 5.55 0.07 -8.62 16 11 N -0.63 -9.37 5.45 -11.13 -0.06 -9.43 16 12 C 0.26 5.15 8.11 -154.39 -1.25 3.90 16 13 C -0.29 -5.68 9.61 -39.83 -0.38 -6.07 16 14 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 15 N -0.32 -7.46 3.67 -62.56 -0.23 -7.69 16 16 C 0.25 6.33 5.57 -5.19 -0.03 6.30 16 17 C -0.61 -17.16 9.24 -34.44 -0.32 -17.48 16 18 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 19 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 20 N -0.90 -26.33 13.65 55.43 0.76 -25.57 16 21 Si 1.08 24.88 29.90 -169.99 -5.08 19.80 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 25 N -0.30 -7.02 12.42 31.44 0.39 -6.63 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.30 6.68 -51.93 -0.35 -0.04 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.30 6.68 -51.93 -0.35 -0.05 16 33 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.49 6.99 -51.92 -0.36 0.13 16 36 H 0.08 0.50 6.99 -51.93 -0.36 0.13 16 37 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.41 4.81 8.82 -40.82 -0.36 4.45 16 42 H 0.16 3.10 5.92 -52.49 -0.31 2.79 16 43 H 0.17 2.76 8.06 -52.48 -0.42 2.33 16 44 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 45 H 0.03 0.90 8.00 -51.93 -0.42 0.49 16 46 H 0.27 7.61 7.22 -40.82 -0.29 7.31 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -33.94 389.33 -9.60 -43.54 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.49 Total: 2.39 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.61 Total: -9.30 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.86 Total: -49.31 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.07 Total: -8.62 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.80 kcal Atomic # 16 Polarization: -2.14 SS G_CDS: -2.22 Total: -4.36 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.94 -9.60 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155251958.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.405 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds