Wall clock time and date at job start Tue Mar 31 2020 13:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47347 * 2 1 4 4 C 1.53003 * 109.47149 * 239.99698 * 2 1 3 5 5 S 1.81403 * 109.47157 * 120.00069 * 2 1 3 6 6 C 1.81405 * 102.99916 * 59.99759 * 5 2 1 7 7 C 1.53000 * 109.47100 * 179.97438 * 6 5 2 8 8 C 1.52996 * 109.47389 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47220 * 180.02562 * 8 7 6 10 10 O 1.21290 * 120.00012 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99736 * 179.97438 * 9 8 7 12 12 C 1.40159 * 119.99983 * 179.97438 * 11 9 8 13 13 C 1.40409 * 125.97033 * 0.02562 * 12 11 9 14 14 C 1.35241 * 107.86602 * 179.73843 * 13 12 11 15 15 N 1.34966 * 107.86079 * 0.39163 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.87198 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31219 * 125.97718 * 179.97438 * 12 11 9 26 26 H 1.09003 * 109.47254 * 299.99859 * 1 2 3 27 27 H 1.08996 * 109.46956 * 59.99818 * 1 2 3 28 28 H 1.09003 * 109.47463 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46779 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46922 * 299.99689 * 3 2 1 31 31 H 1.09000 * 109.47183 * 60.00255 * 3 2 1 32 32 H 1.09003 * 109.47045 * 300.00387 * 4 2 1 33 33 H 1.09010 * 109.46965 * 60.00423 * 4 2 1 34 34 H 1.08996 * 109.47594 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47095 * 59.99967 * 6 5 2 36 36 H 1.08996 * 109.46990 * 300.00455 * 6 5 2 37 37 H 1.09002 * 109.46562 * 59.99953 * 7 6 5 38 38 H 1.09003 * 109.47100 * 300.00515 * 7 6 5 39 39 H 1.09001 * 109.46879 * 60.00047 * 8 7 6 40 40 H 1.09006 * 109.47056 * 300.00623 * 8 7 6 41 41 H 0.97003 * 120.00166 * 0.02562 * 11 9 8 42 42 H 1.08002 * 126.06850 * 0.02562 * 13 12 11 43 43 H 1.08003 * 126.07024 * 180.26845 * 14 13 12 44 44 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 45 45 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 46 46 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 2.1346 -0.8552 1.4811 6 6 1.4374 -2.5205 1.3041 7 6 1.8634 -3.3810 2.4952 8 6 1.2748 -4.7854 2.3463 9 6 1.6938 -5.6328 3.5199 10 8 2.3940 -5.1598 4.3901 11 7 1.2898 -6.9158 3.6029 12 6 1.6799 -7.7042 4.6942 13 6 2.4852 -7.2877 5.7664 14 6 2.6253 -8.3346 6.6110 15 7 1.9443 -9.3784 6.0931 16 6 1.8341 -10.7135 6.6861 17 6 0.3794 -11.0729 6.8477 18 1 -0.3862 -10.3765 6.5392 19 6 0.0262 -12.2905 7.3895 20 7 0.9586 -13.1406 7.7602 21 14 -1.7768 -12.7362 7.5892 22 1 -1.8886 -14.0920 8.1848 23 1 -2.4352 -11.7479 8.4810 24 1 -2.4400 -12.7230 6.2606 25 7 1.3559 -8.9601 4.8928 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1299 -0.7210 -1.2495 35 1 1.8030 -2.9712 0.3814 36 1 0.3497 -2.4573 1.2714 37 1 1.4981 -2.9303 3.4181 38 1 2.9511 -3.4440 2.5274 39 1 1.6397 -5.2362 1.4234 40 1 0.1870 -4.7219 2.3143 41 1 0.7295 -7.2939 2.9072 42 1 2.9126 -6.3044 5.8962 43 1 3.1847 -8.3358 7.5349 44 1 2.3202 -10.7190 7.6617 45 1 2.3180 -11.4414 6.0349 46 1 1.8949 -12.9094 7.6563 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155251958.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:41 Heat of formation + Delta-G solvation = -2.579397 kcal Electronic energy + Delta-G solvation = -23909.161298 eV Core-core repulsion = 20346.263246 eV Total energy + Delta-G solvation = -3562.898052 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.29798 -40.67681 -37.18285 -36.50476 -35.55452 -35.47849 -32.74993 -31.04843 -29.66664 -28.30399 -28.27285 -27.76692 -25.19477 -23.81263 -22.54771 -21.82996 -21.29376 -20.93099 -19.24792 -18.39658 -17.96359 -17.14637 -17.01221 -16.87067 -16.19877 -15.94881 -15.67316 -15.49236 -15.20542 -15.14435 -15.07238 -14.90025 -14.22668 -13.94565 -13.73744 -13.62094 -13.54660 -13.36023 -13.22640 -12.97590 -12.74979 -12.63180 -12.60633 -12.16322 -12.01129 -12.00848 -11.95733 -11.80228 -11.69898 -11.65058 -11.01441 -10.89311 -10.70230 -10.60507 -9.85131 -9.21918 -8.78768 -8.64570 -6.57235 0.71394 0.87785 1.32189 1.40865 1.50951 1.57240 1.68227 1.79047 2.17958 2.31554 2.48820 3.00225 3.50236 3.79445 3.79965 3.86311 3.92336 3.92712 4.12203 4.16654 4.32425 4.41576 4.54933 4.56397 4.64480 4.65216 4.70261 4.76085 4.79656 4.80178 4.81800 4.88767 4.89798 4.89860 5.04916 5.09057 5.15809 5.25981 5.29270 5.31412 5.54054 5.82034 5.92220 6.21951 6.25835 6.40051 6.93077 7.11720 7.18811 8.57173 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.031377 B = 0.001714 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.152845 B =16331.239412 C =16830.306414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.026 4.026 3 C -0.128 4.128 4 C -0.142 4.142 5 S -0.315 6.315 6 C -0.070 4.070 7 C -0.084 4.084 8 C -0.116 4.116 9 C 0.516 3.484 10 O -0.553 6.553 11 N -0.626 5.626 12 C 0.267 3.733 13 C -0.293 4.293 14 C 0.053 3.947 15 N -0.344 5.344 16 C 0.259 3.741 17 C -0.623 4.623 18 H 0.046 0.954 19 C -0.019 4.019 20 N -0.923 5.923 21 Si 1.121 2.879 22 H -0.275 1.275 23 H -0.272 1.272 24 H -0.274 1.274 25 N -0.346 5.346 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.427 0.573 42 H 0.168 0.832 43 H 0.200 0.800 44 H 0.053 0.947 45 H 0.017 0.983 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 26.675 -19.605 33.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 C -0.187 4.187 4 C -0.201 4.201 5 S -0.087 6.087 6 C -0.218 4.218 7 C -0.123 4.123 8 C -0.157 4.157 9 C 0.305 3.695 10 O -0.429 6.429 11 N -0.276 5.276 12 C 0.012 3.988 13 C -0.324 4.324 14 C -0.095 4.095 15 N -0.126 5.126 16 C 0.140 3.860 17 C -0.661 4.661 18 H 0.064 0.936 19 C -0.219 4.219 20 N -0.559 5.559 21 Si 0.941 3.059 22 H -0.200 1.200 23 H -0.197 1.197 24 H -0.199 1.199 25 N -0.177 5.177 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.265 0.735 42 H 0.185 0.815 43 H 0.217 0.783 44 H 0.071 0.929 45 H 0.035 0.965 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.199 25.156 -18.067 30.995 hybrid contribution 0.925 0.877 -1.016 1.630 sum -0.274 26.033 -19.083 32.279 Atomic orbital electron populations 1.22124 0.91925 1.02863 1.03228 1.22748 0.98819 0.98245 0.93692 1.21677 1.01426 0.92382 1.03167 1.22124 1.01703 1.00385 0.95901 1.87297 1.71929 1.13420 1.36042 1.23353 1.03842 0.92667 1.01935 1.20952 1.01332 0.92704 0.97303 1.21666 1.05020 0.93417 0.95565 1.21703 0.78731 0.80308 0.88728 1.90640 1.37986 1.72222 1.42082 1.42769 1.52058 1.10943 1.21824 1.19550 0.97584 0.90350 0.91340 1.21744 1.11666 1.02008 0.96957 1.23175 0.98119 0.87197 1.00984 1.48567 1.37019 1.11368 1.15615 1.19422 0.98484 0.75667 0.92454 1.22289 0.91644 1.05641 1.46482 0.93610 1.27301 1.10396 0.92035 0.92125 1.70948 1.01635 1.37663 1.45604 0.82872 0.68905 0.76577 0.77523 1.19980 1.19680 1.19945 1.77259 1.24485 1.11782 1.04131 0.92140 0.90278 0.91980 0.92355 0.89409 0.92382 0.91965 0.90292 0.92099 0.88257 0.88335 0.92008 0.91884 0.85006 0.85159 0.73527 0.81480 0.78338 0.92939 0.96536 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.32 71.98 0.60 -0.61 16 2 C -0.03 -0.27 0.95 -10.79 -0.01 -0.28 16 3 C -0.13 -1.26 8.48 71.98 0.61 -0.65 16 4 C -0.14 -1.18 8.32 71.98 0.60 -0.58 16 5 S -0.32 -5.22 20.65 -56.49 -1.17 -6.39 16 6 C -0.07 -0.81 5.05 71.98 0.36 -0.45 16 7 C -0.08 -1.33 4.51 30.59 0.14 -1.20 16 8 C -0.12 -1.47 5.70 29.85 0.17 -1.30 16 9 C 0.52 12.85 7.80 87.66 0.68 13.53 16 10 O -0.55 -18.33 13.11 -3.06 -0.04 -18.37 16 11 N -0.63 -17.57 5.45 -307.52 -1.68 -19.25 16 12 C 0.27 10.55 8.11 133.32 1.08 11.63 16 13 C -0.29 -11.56 9.61 22.11 0.21 -11.35 16 14 C 0.05 2.14 11.44 83.52 0.96 3.10 16 15 N -0.34 -16.35 3.67 -351.83 -1.29 -17.64 16 16 C 0.26 13.45 5.57 85.64 0.48 13.93 16 17 C -0.62 -35.59 9.24 25.60 0.24 -35.36 16 18 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 19 C -0.02 -1.06 5.46 84.65 0.46 -0.60 16 20 N -0.92 -54.05 13.65 21.45 0.29 -53.76 16 21 Si 1.12 49.58 29.90 68.60 2.05 51.63 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 N -0.35 -16.15 12.42 -54.45 -0.68 -16.83 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.47 6.68 -2.39 -0.02 0.46 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.46 6.68 -2.39 -0.02 0.45 16 33 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 0.84 6.99 -2.39 -0.02 0.83 16 36 H 0.10 0.86 6.99 -2.39 -0.02 0.84 16 37 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 38 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 39 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.43 9.08 8.82 -92.71 -0.82 8.26 16 42 H 0.17 6.40 5.92 -2.91 -0.02 6.39 16 43 H 0.20 6.34 8.06 -2.91 -0.02 6.32 16 44 H 0.05 2.62 7.94 -2.39 -0.02 2.60 16 45 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 46 H 0.26 15.11 7.22 -92.71 -0.67 14.44 16 Total: -1.00 -75.39 389.33 4.32 -71.06 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.25 Total: 19.72 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 6.58 Total: -10.18 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -3.35 Total: -107.48 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.04 Total: -18.37 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.05 Total: 51.63 kcal Atomic # 16 Polarization: -5.22 SS G_CDS: -1.17 Total: -6.39 kcal Total: -75.39 4.32 -71.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155251958.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.481 kcal (2) G-P(sol) polarization free energy of solvation -75.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds