Wall clock time and date at job start Tue Mar 31 2020 13:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47126 * 2 1 4 4 H 1.08997 * 109.46905 * 55.00281 * 3 2 1 5 5 N 1.46496 * 109.47308 * 294.99890 * 3 2 1 6 6 C 1.34777 * 119.99989 * 84.99881 * 5 3 2 7 7 O 1.21580 * 119.99837 * 0.02562 * 6 5 3 8 8 N 1.34773 * 120.00131 * 180.02562 * 6 5 3 9 9 C 1.39237 * 120.00522 * 175.70933 * 8 6 5 10 10 C 1.39478 * 119.84027 * 215.02529 * 9 8 6 11 11 C 1.36371 * 120.17013 * 179.75905 * 10 9 8 12 12 C 1.40861 * 119.82967 * 0.50986 * 11 10 9 13 13 C 1.41162 * 120.16608 * 179.71782 * 12 11 10 14 14 H 1.07999 * 119.99627 * 214.80656 * 13 12 11 15 15 C 1.39895 * 119.99728 * 34.80839 * 13 12 11 16 16 N 1.30876 * 119.99766 * 355.55310 * 15 13 12 17 17 Si 1.86803 * 119.99786 * 175.55955 * 15 13 12 18 18 H 1.48495 * 109.46973 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47195 * 119.99868 * 17 15 13 20 20 H 1.48499 * 109.46535 * 239.99753 * 17 15 13 21 21 C 1.40869 * 119.67427 * 359.74276 * 12 11 10 22 22 C 1.36380 * 119.82694 * 359.97438 * 21 12 11 23 23 C 1.50704 * 109.47114 * 174.99890 * 3 2 1 24 24 C 1.38646 * 120.79160 * 79.97392 * 23 3 2 25 25 C 1.38200 * 119.16243 * 180.02562 * 24 23 3 26 26 N 1.31863 * 120.76736 * 359.97438 * 25 24 23 27 27 C 1.31872 * 121.72626 * 359.97438 * 26 25 24 28 28 C 1.38204 * 120.75996 * 0.02720 * 27 26 25 29 29 H 1.09003 * 109.47451 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47373 * 299.99853 * 1 2 3 31 31 H 1.08999 * 109.47209 * 59.99692 * 1 2 3 32 32 H 1.09003 * 109.47305 * 239.99617 * 2 1 3 33 33 H 1.09007 * 109.46803 * 119.99807 * 2 1 3 34 34 H 0.96997 * 119.99735 * 265.00353 * 5 3 2 35 35 H 0.97001 * 119.99953 * 355.71462 * 8 6 5 36 36 H 1.08000 * 119.91094 * 0.02562 * 10 9 8 37 37 H 1.08005 * 120.08401 * 180.25005 * 11 10 9 38 38 H 0.96999 * 119.99768 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.09043 * 179.97438 * 21 12 11 40 40 H 1.08000 * 119.91639 * 179.97438 * 22 21 12 41 41 H 1.08003 * 120.41511 * 0.04224 * 24 23 3 42 42 H 1.08004 * 119.61458 * 180.25882 * 25 24 23 43 43 H 1.07998 * 119.61976 * 179.97438 * 27 26 25 44 44 H 1.08004 * 120.41675 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6644 -1.3669 7 8 -0.3412 2.6326 -0.4318 8 7 0.0784 3.2666 -2.5187 9 6 -1.2096 3.7734 -2.6696 10 6 -1.8358 3.7180 -3.9146 11 6 -3.0991 4.2080 -4.0688 12 6 -3.7675 4.7809 -2.9692 13 6 -5.0730 5.2957 -3.1222 14 1 -5.3780 6.1686 -2.5643 15 6 -5.9715 4.6749 -3.9965 16 7 -5.5761 3.6709 -4.7370 17 14 -7.7357 5.2793 -4.1069 18 1 -7.9282 6.4178 -3.1732 19 1 -8.0208 5.7232 -5.4949 20 1 -8.6603 4.1768 -3.7399 21 6 -3.1266 4.8381 -1.7160 22 6 -1.8653 4.3387 -1.5758 23 6 3.5419 1.4443 0.1239 24 6 4.3454 1.2038 -0.9801 25 6 5.7190 1.2129 -0.8282 26 7 6.2659 1.4471 0.3486 27 6 5.5330 1.6807 1.4198 28 6 4.1531 1.6875 1.3444 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8901 34 1 2.2720 2.1231 -1.9977 35 1 0.7190 3.3468 -3.2427 36 1 -1.3205 3.2821 -4.7577 37 1 -3.5842 4.1608 -5.0326 38 1 -6.1991 3.2408 -5.3435 39 1 -3.6326 5.2762 -0.8685 40 1 -1.3724 4.3822 -0.6159 41 1 3.9034 1.0121 -1.9467 42 1 6.3519 1.0306 -1.6841 43 1 6.0168 1.8680 2.3670 44 1 3.5582 1.8791 2.2253 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174713408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:27 Heat of formation + Delta-G solvation = 28.445601 kcal Electronic energy + Delta-G solvation = -26328.455035 eV Core-core repulsion = 22631.458377 eV Total energy + Delta-G solvation = -3696.996659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.83770 -39.87691 -37.71960 -36.22032 -34.34939 -33.13499 -32.31339 -31.96038 -31.47983 -29.54662 -28.76025 -26.79435 -24.79206 -23.87244 -22.87040 -22.00431 -21.09954 -20.55870 -20.11954 -18.28695 -17.36039 -17.26188 -16.48227 -16.22897 -15.90725 -15.51325 -15.25199 -15.00029 -14.23526 -14.16377 -13.96726 -13.86312 -13.65548 -13.48038 -12.97687 -12.69398 -12.67112 -12.11379 -11.92930 -11.68578 -11.63902 -11.43333 -11.31370 -11.15073 -11.00442 -10.82430 -10.70142 -10.05398 -9.96484 -9.83030 -9.52794 -9.49108 -9.44038 -9.23754 -8.92362 -8.85621 -7.52116 -6.81820 -6.59370 -4.31536 0.79259 0.86380 2.66400 2.93876 3.10188 3.10621 3.15679 3.18087 3.48306 3.67843 3.99982 4.11845 4.15962 4.45568 4.56545 4.71513 4.72949 4.82727 4.97785 5.02482 5.24626 5.34397 5.41047 5.55052 5.64614 5.67335 5.77011 5.96808 6.02442 6.19230 6.20824 6.34599 6.44431 6.53811 6.61110 6.78667 6.81390 7.06414 7.16904 7.28024 7.41069 7.63463 7.67302 7.87274 7.98441 8.11783 8.32961 8.45216 8.66444 8.93590 8.95831 9.08933 10.31880 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.031299 B = 0.002271 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.375681 B =12327.515195 C =12474.490280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.204 3.796 4 H 0.102 0.898 5 N -0.747 5.747 6 C 0.697 3.303 7 O -0.569 6.569 8 N -0.667 5.667 9 C 0.024 3.976 10 C -0.123 4.123 11 C -0.141 4.141 12 C 0.098 3.902 13 C -0.461 4.461 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.813 5.813 17 Si 0.914 3.086 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.204 4.204 22 C -0.086 4.086 23 C -0.042 4.042 24 C -0.167 4.167 25 C 0.101 3.899 26 N -0.489 5.489 27 C 0.101 3.899 28 C -0.161 4.161 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.391 0.609 35 H 0.391 0.609 36 H 0.089 0.911 37 H 0.132 0.868 38 H 0.276 0.724 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.134 0.866 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.096 -6.344 5.370 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.098 3.902 4 H 0.120 0.880 5 N -0.405 5.405 6 C 0.398 3.602 7 O -0.446 6.446 8 N -0.313 5.313 9 C -0.069 4.069 10 C -0.144 4.144 11 C -0.161 4.161 12 C 0.095 3.905 13 C -0.492 4.492 14 H 0.094 0.906 15 C -0.146 4.146 16 N -0.441 5.441 17 Si 0.739 3.261 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.200 1.200 21 C -0.224 4.224 22 C -0.106 4.106 23 C -0.051 4.051 24 C -0.187 4.187 25 C -0.056 4.056 26 N -0.198 5.198 27 C -0.056 4.056 28 C -0.181 4.181 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.225 0.775 35 H 0.224 0.776 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.152 0.848 42 H 0.173 0.827 43 H 0.174 0.826 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 18.172 -6.538 6.145 20.267 hybrid contribution -1.116 0.043 -0.942 1.461 sum 17.056 -6.495 5.203 18.978 Atomic orbital electron populations 1.21796 0.93698 1.00572 1.04089 1.21947 0.97843 0.94678 1.01986 1.19681 0.88016 0.94246 0.88215 0.88044 1.45202 1.16682 1.62196 1.16381 1.15927 0.81670 0.78479 0.84141 1.90923 1.51022 1.64220 1.38431 1.42121 1.13680 1.59771 1.15697 1.17054 0.85152 1.08787 0.95871 1.20287 0.96194 1.03320 0.94592 1.21171 0.92044 1.02667 1.00174 1.17722 0.92421 0.90276 0.90081 1.19516 0.96268 1.12202 1.21226 0.90640 1.25867 1.01118 0.94028 0.93551 1.69773 1.36333 1.18502 1.19496 0.86163 0.81672 0.79525 0.78702 1.18619 1.20053 1.20036 1.20811 0.96242 1.08525 0.96852 1.20414 0.95570 0.97565 0.97021 1.20476 0.95824 0.94992 0.93758 1.21963 0.95067 1.02141 0.99569 1.22761 0.92630 0.94891 0.95272 1.67686 1.41158 1.11473 0.99454 1.22781 0.90661 0.94879 0.97251 1.22061 0.96378 1.01425 0.98279 0.93717 0.91945 0.91565 0.91910 0.91388 0.77497 0.77641 0.89234 0.85078 0.91287 0.88683 0.87322 0.84826 0.82654 0.82577 0.84387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.51 37.16 0.32 -1.66 16 2 C -0.13 -1.32 5.59 -26.73 -0.15 -1.47 16 3 C 0.20 2.18 2.49 -69.08 -0.17 2.01 16 4 H 0.10 1.25 7.48 -51.93 -0.39 0.87 16 5 N -0.75 -8.72 4.99 -59.82 -0.30 -9.02 16 6 C 0.70 11.50 6.96 -86.92 -0.61 10.89 16 7 O -0.57 -11.48 10.89 5.30 0.06 -11.43 16 8 N -0.67 -11.28 5.31 -14.10 -0.07 -11.35 16 9 C 0.02 0.52 6.31 -83.57 -0.53 -0.01 16 10 C -0.12 -2.78 9.90 -39.79 -0.39 -3.17 16 11 C -0.14 -3.59 8.61 -39.26 -0.34 -3.93 16 12 C 0.10 2.61 5.55 -106.80 -0.59 2.02 16 13 C -0.46 -12.33 9.02 -37.85 -0.34 -12.67 16 14 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 15 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 16 N -0.81 -21.21 10.60 55.55 0.59 -20.62 16 17 Si 0.91 19.10 29.56 -169.99 -5.03 14.07 16 18 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C -0.20 -5.16 9.74 -39.26 -0.38 -5.54 16 22 C -0.09 -2.02 8.61 -39.79 -0.34 -2.37 16 23 C -0.04 -0.37 4.98 -104.32 -0.52 -0.89 16 24 C -0.17 -1.32 9.15 -39.44 -0.36 -1.68 16 25 C 0.10 0.83 11.18 -17.55 -0.20 0.63 16 26 N -0.49 -4.79 10.36 -13.25 -0.14 -4.93 16 27 C 0.10 0.84 11.18 -17.55 -0.20 0.65 16 28 C -0.16 -1.33 9.78 -39.44 -0.39 -1.72 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.93 7.84 -51.93 -0.41 0.52 16 31 H 0.07 1.11 5.64 -51.93 -0.29 0.82 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 34 H 0.39 3.49 6.97 -40.82 -0.28 3.21 16 35 H 0.39 5.16 8.83 -40.82 -0.36 4.80 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 37 H 0.13 3.47 6.13 -52.48 -0.32 3.15 16 38 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 39 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 40 H 0.11 2.55 6.22 -52.49 -0.33 2.22 16 41 H 0.13 0.80 7.01 -52.48 -0.37 0.44 16 42 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -31.24 363.03 -10.38 -41.62 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -5.68 Total: 13.43 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -5.28 Total: -17.25 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.08 Total: -45.92 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.06 Total: -11.43 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.24 -10.38 -41.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174713408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.066 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds