Wall clock time and date at job start Tue Mar 31 2020 14:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47073 * 2 1 4 4 H 1.08998 * 109.47319 * 54.99874 * 3 2 1 5 5 C 1.50697 * 109.46734 * 175.00022 * 3 2 1 6 6 H 1.08004 * 120.00136 * 119.99929 * 5 3 2 7 7 C 1.37879 * 120.00129 * 299.99469 * 5 3 2 8 8 N 1.31510 * 119.99725 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99701 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46703 * 90.00471 * 9 7 5 11 11 H 1.48502 * 109.46770 * 210.00161 * 9 7 5 12 12 H 1.48498 * 109.47140 * 330.00145 * 9 7 5 13 13 N 1.46501 * 109.46860 * 294.99984 * 3 2 1 14 14 C 1.34781 * 120.00112 * 85.00073 * 13 3 2 15 15 O 1.21571 * 119.99954 * 359.97438 * 14 13 3 16 16 C 1.47683 * 119.99869 * 179.97438 * 14 13 3 17 17 C 1.40117 * 120.86081 * 353.92793 * 16 14 13 18 18 N 1.31931 * 119.01827 * 180.02562 * 17 16 14 19 19 C 1.32745 * 120.89162 * 359.97438 * 18 17 16 20 20 C 1.48182 * 119.05359 * 180.02562 * 19 18 17 21 21 C 1.39445 * 120.12981 * 179.72791 * 20 19 18 22 22 C 1.37995 * 119.86221 * 179.67948 * 21 20 19 23 23 C 1.38339 * 120.12854 * 0.61610 * 22 21 20 24 24 C 1.38343 * 120.27014 * 359.67991 * 23 22 21 25 25 C 1.37985 * 120.13130 * 359.97438 * 24 23 22 26 26 N 1.32708 * 121.89301 * 0.03002 * 19 18 17 27 27 C 1.31958 * 120.89445 * 359.65048 * 26 19 18 28 28 C 1.50700 * 120.48957 * 180.30953 * 27 26 19 29 29 H 1.09001 * 109.47035 * 60.00111 * 1 2 3 30 30 H 1.08999 * 109.47043 * 300.00279 * 1 2 3 31 31 H 1.09003 * 109.47458 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47035 * 119.99889 * 2 1 3 33 33 H 1.08999 * 109.47043 * 239.99721 * 2 1 3 34 34 H 0.97003 * 119.99461 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00143 * 265.00179 * 13 3 2 36 36 H 1.08000 * 120.48925 * 0.02562 * 17 16 14 37 37 H 1.07996 * 120.07087 * 0.02562 * 21 20 19 38 38 H 1.08001 * 119.93351 * 180.34448 * 22 21 20 39 39 H 1.08003 * 119.86659 * 179.70082 * 23 22 21 40 40 H 1.08002 * 119.93390 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.06790 * 180.02562 * 25 24 23 42 42 H 1.08990 * 109.47605 * 263.96249 * 28 27 26 43 43 H 1.09001 * 109.47106 * 23.96405 * 28 27 26 44 44 H 1.09006 * 109.46607 * 143.95901 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8812 1.3817 10 1 6.4416 2.1142 2.0849 11 1 6.4395 -0.3099 2.1549 12 1 6.6135 0.8415 0.0277 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3415 2.6318 -0.4322 16 6 0.0446 3.3250 -2.6288 17 6 0.9666 3.4847 -3.6718 18 7 0.5789 4.0807 -4.7830 19 6 -0.6644 4.5253 -4.9199 20 6 -1.0563 5.1883 -6.1859 21 6 -2.3579 5.6587 -6.3559 22 6 -2.7151 6.2811 -7.5346 23 6 -1.7883 6.4274 -8.5512 24 6 -0.4971 5.9573 -8.3907 25 6 -0.1262 5.3395 -7.2139 26 7 -1.5664 4.3932 -3.9555 27 6 -1.2587 3.8029 -2.8162 28 6 -2.2922 3.6516 -1.7299 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.8293 -0.0610 2.9499 35 1 2.2719 2.1231 -1.9978 36 1 1.9796 3.1250 -3.5675 37 1 -3.0835 5.5411 -5.5647 38 1 -3.7214 6.6509 -7.6654 39 1 -2.0738 6.9109 -9.4738 40 1 0.2222 6.0747 -9.1877 41 1 0.8822 4.9732 -7.0895 42 1 -2.1888 4.4668 -1.0139 43 1 -3.2889 3.6789 -2.1703 44 1 -2.1463 2.6993 -1.2198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183902572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:25 Heat of formation + Delta-G solvation = 16.035796 kcal Electronic energy + Delta-G solvation = -26528.264427 eV Core-core repulsion = 22830.729639 eV Total energy + Delta-G solvation = -3697.534788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.47079 -40.59966 -39.67665 -37.09766 -35.61538 -34.67494 -34.13172 -32.79054 -31.88967 -31.32206 -29.84641 -28.66672 -26.42008 -25.01377 -24.49737 -23.15593 -22.82077 -22.05151 -21.26858 -19.42034 -18.90007 -18.48188 -17.67089 -17.06136 -16.88188 -16.76432 -16.19561 -15.86611 -15.70478 -15.52368 -15.17512 -14.63595 -14.54765 -14.33982 -14.26044 -14.13144 -13.85144 -13.55799 -13.46463 -13.24680 -13.18553 -12.86449 -12.79720 -12.68218 -12.24870 -12.15118 -12.04461 -11.99116 -11.76473 -11.56775 -11.05791 -11.01500 -10.63856 -10.50186 -10.44725 -9.87678 -9.73080 -9.50708 -8.15632 -6.32222 -0.99564 -0.12793 0.46571 0.49017 1.45632 1.46618 1.56333 1.90181 2.26584 2.47416 2.57186 2.58342 2.83858 3.00710 3.14613 3.26344 3.65813 3.83954 3.94170 4.06323 4.14278 4.30433 4.40609 4.51896 4.55463 4.58979 4.63079 4.67446 4.76849 4.77441 4.87618 5.01549 5.07968 5.16023 5.26257 5.28799 5.44578 5.50444 5.53948 5.55052 5.58949 5.60859 5.75836 5.80923 5.90218 6.02455 6.17325 6.73858 6.79119 6.88640 7.30660 7.46416 8.89523 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.002699 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.818848 B =10373.339939 C =11423.148097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.281 3.719 4 H 0.007 0.993 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.966 3.034 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.261 1.261 13 N -0.696 5.696 14 C 0.557 3.443 15 O -0.558 6.558 16 C -0.257 4.257 17 C 0.196 3.804 18 N -0.527 5.527 19 C 0.368 3.632 20 C -0.080 4.080 21 C -0.079 4.079 22 C -0.133 4.133 23 C -0.091 4.091 24 C -0.133 4.133 25 C -0.078 4.078 26 N -0.526 5.526 27 C 0.230 3.770 28 C -0.102 4.102 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.401 0.599 36 H 0.198 0.802 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 9.927 -20.711 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.178 3.822 4 H 0.025 0.975 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.791 3.209 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.185 1.185 13 N -0.345 5.345 14 C 0.342 3.658 15 O -0.439 6.439 16 C -0.264 4.264 17 C 0.028 3.972 18 N -0.241 5.241 19 C 0.105 3.895 20 C -0.082 4.082 21 C -0.099 4.099 22 C -0.150 4.150 23 C -0.109 4.109 24 C -0.150 4.150 25 C -0.098 4.098 26 N -0.241 5.241 27 C 0.083 3.917 28 C -0.159 4.159 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.215 0.785 37 H 0.150 0.850 38 H 0.171 0.829 39 H 0.175 0.825 40 H 0.171 0.829 41 H 0.152 0.848 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.943 10.214 -20.661 25.101 hybrid contribution 1.593 -0.692 1.340 2.194 sum -8.350 9.523 -19.321 23.102 Atomic orbital electron populations 1.21687 0.96838 0.99203 1.00396 1.21800 0.93900 0.99031 1.01369 1.18430 0.93699 0.89196 0.80867 0.97540 1.21564 0.91390 1.38960 1.06727 0.90966 1.25701 1.02985 0.94414 0.95112 1.70032 1.36939 1.38274 1.09813 0.85433 0.79523 0.77329 0.78586 1.20585 1.21101 1.18481 1.46186 1.14802 1.55538 1.17951 1.17896 0.82528 0.78703 0.86625 1.90707 1.51328 1.61108 1.40757 1.21713 0.98012 1.08502 0.98214 1.23841 1.00126 0.87514 0.85716 1.68421 1.17706 1.13258 1.24693 1.22012 0.85016 0.89506 0.92923 1.18271 0.96019 1.03346 0.90603 1.21466 0.94495 0.95329 0.98600 1.21465 1.01450 0.99411 0.92712 1.21796 0.92818 0.96669 0.99618 1.21474 0.97711 0.98527 0.97319 1.21479 0.99443 0.96449 0.92411 1.68338 1.36584 1.17797 1.01365 1.22168 0.92552 0.84895 0.92096 1.21008 0.95713 1.05086 0.94103 0.93903 0.94925 0.93772 0.90829 0.94193 0.92607 0.76355 0.78508 0.85033 0.82939 0.82467 0.82889 0.84798 0.89173 0.89065 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.51 71.98 0.61 -4.70 16 2 C -0.12 -5.78 5.45 30.60 0.17 -5.61 16 3 C 0.28 13.73 2.24 44.24 0.10 13.83 16 4 H 0.01 0.39 7.58 -2.39 -0.02 0.37 16 5 C -0.55 -27.87 8.73 25.60 0.22 -27.65 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.96 5.29 84.66 0.45 1.40 16 8 N -0.91 -50.73 11.29 21.45 0.24 -50.49 16 9 Si 0.97 41.11 29.54 68.60 2.03 43.14 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 13 N -0.70 -27.34 4.98 -449.13 -2.24 -29.58 16 14 C 0.56 21.27 6.29 86.74 0.55 21.81 16 15 O -0.56 -24.17 10.66 -3.94 -0.04 -24.21 16 16 C -0.26 -8.26 5.91 -19.88 -0.12 -8.38 16 17 C 0.20 5.45 10.79 85.13 0.92 6.37 16 18 N -0.53 -14.92 9.42 -188.14 -1.77 -16.70 16 19 C 0.37 10.57 7.55 137.42 1.04 11.61 16 20 C -0.08 -1.92 5.88 -20.05 -0.12 -2.04 16 21 C -0.08 -1.59 9.56 22.50 0.22 -1.38 16 22 C -0.13 -1.85 10.03 22.24 0.22 -1.63 16 23 C -0.09 -1.05 10.04 22.32 0.22 -0.83 16 24 C -0.13 -1.84 10.03 22.23 0.22 -1.61 16 25 C -0.08 -1.55 9.56 22.50 0.22 -1.34 16 26 N -0.53 -15.67 9.36 -176.36 -1.65 -17.32 16 27 C 0.23 7.15 6.86 42.99 0.30 7.44 16 28 C -0.10 -2.89 8.98 71.24 0.64 -2.25 16 29 H 0.04 1.76 5.64 -2.39 -0.01 1.75 16 30 H 0.03 1.49 7.84 -2.39 -0.02 1.47 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 3.92 5.95 -2.39 -0.01 3.91 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.40 13.23 6.70 -92.71 -0.62 12.61 16 36 H 0.20 4.36 6.57 -2.91 -0.02 4.34 16 37 H 0.13 2.70 7.50 -2.91 -0.02 2.68 16 38 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 40 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.13 2.67 7.50 -2.91 -0.02 2.65 16 42 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.09 3.03 5.96 -2.38 -0.01 3.01 16 Total: -1.00 -64.45 362.31 2.84 -61.61 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.42 Total: 28.49 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 5.85 Total: 5.05 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -5.42 Total: -114.08 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.04 Total: -24.21 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -64.45 2.84 -61.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183902572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.650 kcal (2) G-P(sol) polarization free energy of solvation -64.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds