Wall clock time and date at job start Tue Mar 31 2020 13:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47404 * 2 1 4 4 H 1.09003 * 109.46881 * 305.54459 * 3 2 1 5 5 N 1.46892 * 109.47033 * 185.54528 * 3 2 1 6 6 C 1.46905 * 111.00321 * 85.81588 * 5 3 2 7 7 C 1.52998 * 109.47365 * 175.50787 * 6 5 3 8 8 C 1.50695 * 109.47246 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99892 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00508 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99201 * 0.02562 * 10 8 7 12 12 C 1.46491 * 120.00398 * 180.02562 * 10 8 7 13 13 C 1.50697 * 109.47423 * 90.00313 * 12 10 8 14 14 H 1.07999 * 119.99821 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00328 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99929 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00120 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46753 * 59.99927 * 17 15 13 19 19 H 1.48500 * 109.47028 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47079 * 299.99969 * 17 15 13 21 21 C 1.50699 * 109.46875 * 65.54083 * 3 2 1 22 22 N 1.29018 * 124.91791 * 254.71845 * 21 3 2 23 23 C 1.31786 * 117.12828 * 179.81472 * 22 21 3 24 24 C 1.50693 * 122.75416 * 180.22538 * 23 22 21 25 25 C 1.33645 * 114.49578 * 0.47964 * 23 22 21 26 26 S 1.70975 * 124.91301 * 75.02987 * 21 3 2 27 27 H 1.09005 * 109.46738 * 294.68020 * 1 2 3 28 28 H 1.08994 * 109.47303 * 174.67780 * 1 2 3 29 29 H 1.09002 * 109.47225 * 54.67452 * 1 2 3 30 30 H 1.08992 * 109.47488 * 120.00338 * 2 1 3 31 31 H 1.09002 * 109.46784 * 240.00259 * 2 1 3 32 32 H 1.00905 * 110.99796 * 209.76495 * 5 3 2 33 33 H 1.08999 * 109.47094 * 295.51391 * 6 5 3 34 34 H 1.09009 * 109.46783 * 55.50622 * 6 5 3 35 35 H 1.09001 * 109.46849 * 300.00018 * 7 6 5 36 36 H 1.08997 * 109.46914 * 59.99995 * 7 6 5 37 37 H 1.09003 * 109.47551 * 90.00496 * 11 10 8 38 38 H 1.09005 * 109.46831 * 209.99639 * 11 10 8 39 39 H 1.08993 * 109.47621 * 329.99388 * 11 10 8 40 40 H 1.08998 * 109.47142 * 210.00207 * 12 10 8 41 41 H 1.09000 * 109.47280 * 330.00033 * 12 10 8 42 42 H 0.96999 * 120.00364 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.47535 * 270.24558 * 24 23 22 44 44 H 1.08998 * 109.46974 * 30.24850 * 24 23 22 45 45 H 1.09003 * 109.46996 * 150.24908 * 24 23 22 46 46 H 1.07998 * 126.03965 * 179.78869 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5979 1.9842 -0.8362 5 7 3.5029 1.4445 -0.1338 6 6 3.9025 1.3893 -1.5464 7 6 5.4244 1.5060 -1.6509 8 6 5.8342 1.4500 -3.1000 9 8 4.9920 1.3282 -3.9641 10 7 7.1367 1.5351 -3.4358 11 6 8.1541 1.6816 -2.3919 12 6 7.5350 1.4813 -4.8445 13 6 7.5570 2.8763 -5.4141 14 1 7.2995 3.7187 -4.7893 15 6 7.9047 3.0770 -6.7331 16 7 8.2177 2.0511 -7.4941 17 14 7.9312 4.8062 -7.4393 18 1 8.9029 5.6353 -6.6819 19 1 8.3339 4.7514 -8.8676 20 1 6.5773 5.4063 -7.3299 21 6 1.6529 2.1121 1.2933 22 7 0.7113 2.9850 1.4200 23 6 0.5003 3.4705 2.6269 24 6 -0.5688 4.4913 2.9196 25 6 1.3157 2.9871 3.5689 26 16 2.4029 1.8307 2.8038 27 1 -0.3633 0.4291 0.9339 28 1 -0.3633 -1.0232 -0.0953 29 1 -0.3634 0.5942 -0.8385 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.9068 2.2473 0.3251 33 1 3.5801 0.4420 -1.9784 34 1 3.4369 2.2128 -2.0881 35 1 5.7467 2.4534 -1.2189 36 1 5.8899 0.6826 -1.1092 37 1 8.4896 0.6956 -2.0705 38 1 9.0013 2.2427 -2.7865 39 1 7.7288 2.2156 -1.5423 40 1 8.5287 1.0405 -4.9245 41 1 6.8219 0.8729 -5.4007 42 1 8.4620 2.1922 -8.4222 43 1 -0.1572 5.4934 2.7991 44 1 -1.4005 4.3547 2.2285 45 1 -0.9220 4.3643 3.9429 46 1 1.3091 3.2571 4.6146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184398744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:38 Heat of formation + Delta-G solvation = -1.325028 kcal Electronic energy + Delta-G solvation = -24801.242460 eV Core-core repulsion = 21238.398802 eV Total energy + Delta-G solvation = -3562.843659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.26188 -39.07489 -37.43593 -34.83875 -33.74223 -32.59289 -31.91726 -30.35529 -28.04808 -27.76280 -26.45156 -25.58672 -23.85325 -23.41907 -21.79847 -20.95927 -19.85092 -18.45078 -17.79898 -16.55776 -16.42689 -16.25225 -15.79466 -15.42056 -15.18544 -14.92313 -14.44855 -14.35504 -14.08165 -13.79810 -13.51069 -13.30565 -12.88492 -12.76681 -12.71910 -12.37542 -12.20028 -12.05117 -11.98197 -11.76064 -11.68710 -11.51488 -11.34257 -11.23412 -11.10183 -10.93231 -10.81634 -10.54080 -10.15617 -9.87069 -9.64351 -9.64040 -8.98152 -8.89053 -8.71802 -8.42946 -7.63330 -6.03847 -4.08737 0.42168 1.11851 1.54433 2.48771 3.31749 3.36286 3.37423 3.43856 3.46603 3.91387 4.20400 4.45458 4.55154 4.82234 4.83576 4.92756 5.01861 5.07296 5.21956 5.23955 5.25689 5.29705 5.31489 5.36838 5.40015 5.54580 5.60203 5.62077 5.81086 5.84895 5.89827 5.91165 5.94638 6.05510 6.10100 6.13491 6.22607 6.73673 7.03501 7.08878 7.45111 7.50698 7.54773 7.92385 8.23993 8.42882 8.90284 9.10167 9.56270 11.04178 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.002307 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.731559 B =12133.081789 C =12427.575319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C 0.161 3.839 4 H 0.079 0.921 5 N -0.684 5.684 6 C 0.075 3.925 7 C -0.138 4.138 8 C 0.505 3.495 9 O -0.544 6.544 10 N -0.603 5.603 11 C 0.084 3.916 12 C 0.245 3.755 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.051 3.949 22 N -0.469 5.469 23 C 0.066 3.934 24 C -0.079 4.079 25 C -0.277 4.277 26 S 0.155 5.845 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.341 0.659 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.032 0.968 41 H 0.044 0.956 42 H 0.264 0.736 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.483 -1.103 25.143 28.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C 0.048 3.952 4 H 0.097 0.903 5 N -0.316 5.316 6 C -0.053 4.053 7 C -0.179 4.179 8 C 0.291 3.709 9 O -0.422 6.422 10 N -0.335 5.335 11 C -0.060 4.060 12 C 0.126 3.874 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.227 4.227 22 N -0.184 5.184 23 C -0.067 4.067 24 C -0.138 4.138 25 C -0.416 4.416 26 S 0.411 5.589 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.159 0.841 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.240 -2.391 24.439 27.437 hybrid contribution -0.609 2.612 -0.417 2.714 sum -12.849 0.221 24.022 27.243 Atomic orbital electron populations 1.21748 0.95314 1.01726 1.02016 1.21559 0.95563 0.93934 1.03636 1.20177 0.88806 0.95936 0.90245 0.90337 1.60741 1.06741 1.48118 1.16035 1.21761 0.94341 1.02951 0.86287 1.21622 0.96560 1.03867 0.95806 1.20226 0.82955 0.77648 0.90076 1.90673 1.50079 1.50009 1.51463 1.48157 1.05173 1.70611 1.09585 1.21637 0.93035 1.00368 0.91004 1.19277 0.95965 0.97612 0.74579 1.21389 1.46293 0.92867 0.95997 0.92612 1.24939 0.95179 0.97254 0.96756 1.69921 1.46154 1.29952 1.07355 0.86559 0.78511 0.84414 0.77941 1.20264 1.21144 1.20198 1.27090 0.96806 0.98508 1.00337 1.66136 1.17603 1.10424 1.24208 1.20310 0.99341 1.00025 0.87001 1.20354 0.95525 0.95765 1.02164 1.26946 1.03187 1.06279 1.05192 1.84130 1.34266 1.38778 1.01771 0.93172 0.92315 0.92326 0.91135 0.90147 0.84111 0.89602 0.93695 0.89723 0.88641 0.93689 0.90869 0.92423 0.95032 0.93838 0.92653 0.90652 0.90584 0.90811 0.80783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.65 37.16 0.36 -1.05 16 2 C -0.11 -1.06 5.64 -26.73 -0.15 -1.21 16 3 C 0.16 1.76 2.60 -68.87 -0.18 1.58 16 4 H 0.08 0.97 7.72 -51.93 -0.40 0.57 16 5 N -0.68 -7.45 6.16 -107.95 -0.66 -8.12 16 6 C 0.08 1.02 4.82 -3.82 -0.02 1.00 16 7 C -0.14 -1.94 4.47 -27.89 -0.12 -2.06 16 8 C 0.50 10.31 7.67 -10.99 -0.08 10.22 16 9 O -0.54 -13.55 15.56 5.56 0.09 -13.46 16 10 N -0.60 -12.76 2.86 -182.96 -0.52 -13.28 16 11 C 0.08 1.31 10.24 59.85 0.61 1.92 16 12 C 0.24 6.46 5.16 -5.20 -0.03 6.43 16 13 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 14 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 17 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.05 0.55 5.08 -13.46 -0.07 0.48 16 22 N -0.47 -5.52 10.53 -8.06 -0.08 -5.60 16 23 C 0.07 0.64 6.74 -84.22 -0.57 0.08 16 24 C -0.08 -0.55 10.31 36.00 0.37 -0.18 16 25 C -0.28 -2.30 11.13 29.12 0.32 -1.98 16 26 S 0.16 1.36 22.85 -107.50 -2.46 -1.09 16 27 H 0.05 0.50 7.57 -51.93 -0.39 0.11 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.82 7.47 -51.93 -0.39 0.43 16 32 H 0.34 3.49 8.17 -39.29 -0.32 3.17 16 33 H 0.09 1.24 7.47 -51.93 -0.39 0.85 16 34 H 0.04 0.69 7.90 -51.92 -0.41 0.27 16 35 H 0.08 1.05 7.40 -51.93 -0.38 0.67 16 36 H 0.10 1.16 8.11 -51.93 -0.42 0.74 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 39 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 40 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 41 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 46 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 393.41 15.07 5.93 5.93 Total: -1.00 -33.77 393.41 -9.56 -43.33 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.59 Total: -0.16 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 0.03 Total: 1.49 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.54 Total: -53.04 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.46 Total: -1.09 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.77 -9.56 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184398744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.008 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds