Wall clock time and date at job start Tue Mar 31 2020 13:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47404 * 2 1 4 4 H 1.09003 * 109.46881 * 305.54459 * 3 2 1 5 5 N 1.46892 * 109.47033 * 185.54528 * 3 2 1 6 6 C 1.46905 * 111.00321 * 85.81588 * 5 3 2 7 7 C 1.52998 * 109.47365 * 175.50787 * 6 5 3 8 8 C 1.50695 * 109.47246 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99892 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00508 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99201 * 0.02562 * 10 8 7 12 12 C 1.46491 * 120.00398 * 180.02562 * 10 8 7 13 13 C 1.50697 * 109.47423 * 90.00313 * 12 10 8 14 14 H 1.07999 * 119.99821 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00328 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99929 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00120 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46753 * 59.99927 * 17 15 13 19 19 H 1.48500 * 109.47028 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47079 * 299.99969 * 17 15 13 21 21 C 1.50699 * 109.46875 * 65.54083 * 3 2 1 22 22 N 1.29018 * 124.91791 * 254.71845 * 21 3 2 23 23 C 1.31786 * 117.12828 * 179.81472 * 22 21 3 24 24 C 1.50693 * 122.75416 * 180.22538 * 23 22 21 25 25 C 1.33645 * 114.49578 * 0.47964 * 23 22 21 26 26 S 1.70975 * 124.91301 * 75.02987 * 21 3 2 27 27 H 1.09005 * 109.46738 * 294.68020 * 1 2 3 28 28 H 1.08994 * 109.47303 * 174.67780 * 1 2 3 29 29 H 1.09002 * 109.47225 * 54.67452 * 1 2 3 30 30 H 1.08992 * 109.47488 * 120.00338 * 2 1 3 31 31 H 1.09002 * 109.46784 * 240.00259 * 2 1 3 32 32 H 1.00905 * 110.99796 * 209.76495 * 5 3 2 33 33 H 1.08999 * 109.47094 * 295.51391 * 6 5 3 34 34 H 1.09009 * 109.46783 * 55.50622 * 6 5 3 35 35 H 1.09001 * 109.46849 * 300.00018 * 7 6 5 36 36 H 1.08997 * 109.46914 * 59.99995 * 7 6 5 37 37 H 1.09003 * 109.47551 * 90.00496 * 11 10 8 38 38 H 1.09005 * 109.46831 * 209.99639 * 11 10 8 39 39 H 1.08993 * 109.47621 * 329.99388 * 11 10 8 40 40 H 1.08998 * 109.47142 * 210.00207 * 12 10 8 41 41 H 1.09000 * 109.47280 * 330.00033 * 12 10 8 42 42 H 0.96999 * 120.00364 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.47535 * 270.24558 * 24 23 22 44 44 H 1.08998 * 109.46974 * 30.24850 * 24 23 22 45 45 H 1.09003 * 109.46996 * 150.24908 * 24 23 22 46 46 H 1.07998 * 126.03965 * 179.78869 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5979 1.9842 -0.8362 5 7 3.5029 1.4445 -0.1338 6 6 3.9025 1.3893 -1.5464 7 6 5.4244 1.5060 -1.6509 8 6 5.8342 1.4500 -3.1000 9 8 4.9920 1.3282 -3.9641 10 7 7.1367 1.5351 -3.4358 11 6 8.1541 1.6816 -2.3919 12 6 7.5350 1.4813 -4.8445 13 6 7.5570 2.8763 -5.4141 14 1 7.2995 3.7187 -4.7893 15 6 7.9047 3.0770 -6.7331 16 7 8.2177 2.0511 -7.4941 17 14 7.9312 4.8062 -7.4393 18 1 8.9029 5.6353 -6.6819 19 1 8.3339 4.7514 -8.8676 20 1 6.5773 5.4063 -7.3299 21 6 1.6529 2.1121 1.2933 22 7 0.7113 2.9850 1.4200 23 6 0.5003 3.4705 2.6269 24 6 -0.5688 4.4913 2.9196 25 6 1.3157 2.9871 3.5689 26 16 2.4029 1.8307 2.8038 27 1 -0.3633 0.4291 0.9339 28 1 -0.3633 -1.0232 -0.0953 29 1 -0.3634 0.5942 -0.8385 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.9068 2.2473 0.3251 33 1 3.5801 0.4420 -1.9784 34 1 3.4369 2.2128 -2.0881 35 1 5.7467 2.4534 -1.2189 36 1 5.8899 0.6826 -1.1092 37 1 8.4896 0.6956 -2.0705 38 1 9.0013 2.2427 -2.7865 39 1 7.7288 2.2156 -1.5423 40 1 8.5287 1.0405 -4.9245 41 1 6.8219 0.8729 -5.4007 42 1 8.4620 2.1922 -8.4222 43 1 -0.1572 5.4934 2.7991 44 1 -1.4005 4.3547 2.2285 45 1 -0.9220 4.3643 3.9429 46 1 1.3091 3.2571 4.6146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184398744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:37 Heat of formation + Delta-G solvation = -24.695211 kcal Electronic energy + Delta-G solvation = -24802.255868 eV Core-core repulsion = 21238.398802 eV Total energy + Delta-G solvation = -3563.857066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01645 -40.65175 -38.38752 -36.59268 -34.89404 -34.55835 -32.59411 -31.55244 -29.64678 -28.55778 -27.53935 -27.05224 -25.11266 -24.62630 -23.21872 -21.77699 -20.58737 -19.96148 -18.70615 -18.58742 -17.85068 -17.30262 -16.96961 -16.79436 -16.30101 -16.17629 -15.99816 -15.27895 -15.08914 -14.82678 -14.53420 -14.31071 -14.10863 -13.94783 -13.68091 -13.43615 -13.41836 -13.32053 -13.23743 -13.17107 -12.89107 -12.78110 -12.59606 -12.47201 -12.25788 -12.19227 -12.16052 -12.12518 -11.77105 -11.71286 -10.65154 -10.61937 -10.60246 -10.34631 -9.70305 -9.63124 -9.40255 -8.23073 -6.38187 -0.28362 0.43304 0.85093 1.35235 1.39688 1.46936 1.76569 1.85924 2.26715 2.40309 2.78707 3.06099 3.24688 3.78496 3.83485 3.97222 4.08138 4.15804 4.20693 4.29254 4.38928 4.42143 4.45161 4.49567 4.65454 4.75060 4.75879 4.82591 4.83347 4.89022 4.94126 4.96959 5.00155 5.04702 5.08688 5.15141 5.23749 5.30804 5.35802 5.55748 5.73604 5.84643 6.05691 6.17885 6.69084 6.80263 6.80884 7.27688 7.49804 8.83697 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.002307 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.731559 B =12133.081789 C =12427.575319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C 0.163 3.837 4 H 0.056 0.944 5 N -0.667 5.667 6 C 0.085 3.915 7 C -0.118 4.118 8 C 0.494 3.506 9 O -0.602 6.602 10 N -0.612 5.612 11 C 0.078 3.922 12 C 0.258 3.742 13 C -0.543 4.543 14 H 0.052 0.948 15 C 0.006 3.994 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.259 1.259 19 H -0.278 1.278 20 H -0.279 1.279 21 C 0.028 3.972 22 N -0.497 5.497 23 C 0.040 3.960 24 C -0.077 4.077 25 C -0.267 4.267 26 S 0.186 5.814 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.348 0.652 33 H 0.073 0.927 34 H 0.020 0.980 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.023 0.977 41 H -0.003 1.003 42 H 0.267 0.733 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.963 -0.074 28.307 30.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C 0.050 3.950 4 H 0.074 0.926 5 N -0.300 5.300 6 C -0.044 4.044 7 C -0.158 4.158 8 C 0.283 3.717 9 O -0.484 6.484 10 N -0.343 5.343 11 C -0.064 4.064 12 C 0.136 3.864 13 C -0.582 4.582 14 H 0.071 0.929 15 C -0.193 4.193 16 N -0.568 5.568 17 Si 0.791 3.209 18 H -0.184 1.184 19 H -0.203 1.203 20 H -0.205 1.205 21 C -0.249 4.249 22 N -0.213 5.213 23 C -0.091 4.091 24 C -0.136 4.136 25 C -0.406 4.406 26 S 0.441 5.559 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.091 0.909 34 H 0.038 0.962 35 H 0.131 0.869 36 H 0.145 0.855 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.041 0.959 41 H 0.015 0.985 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.115 0.885 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.692 -1.359 27.659 30.059 hybrid contribution -0.784 2.249 -1.329 2.727 sum -12.476 0.890 26.330 29.150 Atomic orbital electron populations 1.21690 0.95033 1.02260 1.01230 1.21530 0.95784 0.93315 1.03695 1.20090 0.88397 0.96327 0.90141 0.92601 1.60708 1.06946 1.48311 1.14004 1.21542 0.94068 1.01357 0.87474 1.21542 0.96708 1.06528 0.91039 1.21354 0.81984 0.75976 0.92406 1.90644 1.51554 1.52368 1.53786 1.48200 1.06931 1.70533 1.08613 1.21953 0.91608 1.02494 0.90352 1.18739 0.94030 0.95895 0.77698 1.21676 1.46349 0.93582 0.96583 0.92931 1.25877 0.94596 1.01655 0.97149 1.70043 1.46762 1.32250 1.07749 0.85474 0.78584 0.79216 0.77579 1.18355 1.20273 1.20456 1.26934 0.97701 0.99194 1.01072 1.66129 1.18330 1.11069 1.25777 1.20729 1.00631 1.01036 0.86747 1.20421 0.94566 0.95295 1.03306 1.27344 1.01955 1.05006 1.06304 1.83943 1.33533 1.38336 1.00049 0.93695 0.91001 0.93391 0.90217 0.90768 0.83313 0.90894 0.96191 0.86921 0.85466 0.90986 0.91811 0.88471 0.95859 0.98535 0.92377 0.90230 0.91507 0.88470 0.77911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.65 71.98 0.69 -2.00 16 2 C -0.10 -2.02 5.64 30.60 0.17 -1.84 16 3 C 0.16 3.53 2.60 44.17 0.11 3.64 16 4 H 0.06 1.46 7.72 -2.39 -0.02 1.44 16 5 N -0.67 -13.65 6.16 -495.45 -3.05 -16.70 16 6 C 0.09 2.27 4.82 86.30 0.42 2.68 16 7 C -0.12 -3.07 4.47 29.85 0.13 -2.94 16 8 C 0.49 20.23 7.67 87.66 0.67 20.90 16 9 O -0.60 -31.32 15.56 -3.04 -0.05 -31.36 16 10 N -0.61 -25.82 2.86 -851.16 -2.43 -28.26 16 11 C 0.08 2.24 10.24 127.77 1.31 3.55 16 12 C 0.26 14.12 5.16 85.63 0.44 14.56 16 13 C -0.54 -31.73 9.39 25.60 0.24 -31.49 16 14 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 15 C 0.01 0.36 5.46 84.65 0.46 0.82 16 16 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 17 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 18 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 21 C 0.03 0.59 5.08 88.52 0.45 1.04 16 22 N -0.50 -11.46 10.53 -179.41 -1.89 -13.35 16 23 C 0.04 0.73 6.74 41.52 0.28 1.01 16 24 C -0.08 -0.96 10.31 71.23 0.73 -0.22 16 25 C -0.27 -3.72 11.13 66.78 0.74 -2.98 16 26 S 0.19 2.83 22.85 -56.49 -1.29 1.54 16 27 H 0.04 0.88 7.57 -2.38 -0.02 0.86 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.52 7.47 -2.39 -0.02 1.50 16 32 H 0.35 6.35 8.17 -89.69 -0.73 5.62 16 33 H 0.07 2.14 7.47 -2.39 -0.02 2.13 16 34 H 0.02 0.63 7.90 -2.38 -0.02 0.61 16 35 H 0.11 2.36 7.40 -2.39 -0.02 2.35 16 36 H 0.13 2.59 8.11 -2.39 -0.02 2.57 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 1.96 8.07 -2.38 -0.02 1.94 16 39 H 0.10 2.02 6.44 -2.39 -0.02 2.01 16 40 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 41 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.10 0.71 8.12 -2.39 -0.02 0.69 16 46 H 0.20 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -77.43 393.41 0.70 -76.73 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.24 Total: 13.83 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 6.86 Total: 6.73 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -7.09 Total: -114.88 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.05 Total: -31.36 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.29 Total: 1.54 kcal Total: -77.43 0.70 -76.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184398744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.036 kcal (2) G-P(sol) polarization free energy of solvation -77.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds