Wall clock time and date at job start Tue Mar 31 2020 13:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47362 * 2 1 4 4 H 1.08996 * 109.46826 * 305.74543 * 3 2 1 5 5 N 1.46901 * 109.47092 * 65.74084 * 3 2 1 6 6 C 1.46899 * 110.99871 * 205.80240 * 5 3 2 7 7 C 1.50703 * 109.46901 * 185.48523 * 6 5 3 8 8 O 1.21280 * 120.00076 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00000 * 180.27079 * 7 6 5 10 10 C 1.46492 * 119.99942 * 359.72796 * 9 7 6 11 11 C 1.53000 * 109.47251 * 89.99707 * 10 9 7 12 12 C 1.46501 * 119.99812 * 179.72280 * 9 7 6 13 13 C 1.50706 * 109.46705 * 90.00504 * 12 9 7 14 14 H 1.07998 * 120.00244 * 359.97438 * 13 12 9 15 15 C 1.37882 * 119.99694 * 179.97438 * 13 12 9 16 16 N 1.31514 * 119.99911 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99838 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46992 * 89.99912 * 17 15 13 19 19 H 1.48494 * 109.47163 * 209.99835 * 17 15 13 20 20 H 1.48499 * 109.47148 * 330.00137 * 17 15 13 21 21 C 1.50701 * 109.47551 * 185.73789 * 3 2 1 22 22 N 1.29023 * 124.91317 * 104.99707 * 21 3 2 23 23 C 1.31783 * 117.12443 * 179.97438 * 22 21 3 24 24 C 1.50702 * 122.75187 * 179.97438 * 23 22 21 25 25 C 1.33638 * 114.49789 * 0.02562 * 23 22 21 26 26 S 1.70980 * 124.91743 * 284.70113 * 21 3 2 27 27 H 1.08995 * 109.46768 * 54.66209 * 1 2 3 28 28 H 1.08999 * 109.46755 * 174.66066 * 1 2 3 29 29 H 1.08992 * 109.47304 * 294.65783 * 1 2 3 30 30 H 1.08997 * 109.47484 * 239.99834 * 2 1 3 31 31 H 1.09003 * 109.47332 * 119.99807 * 2 1 3 32 32 H 1.00907 * 110.99597 * 329.75140 * 5 3 2 33 33 H 1.08998 * 109.47202 * 65.48865 * 6 5 3 34 34 H 1.08996 * 109.46920 * 305.47969 * 6 5 3 35 35 H 1.08998 * 109.47259 * 209.99669 * 10 9 7 36 36 H 1.08999 * 109.47118 * 330.00122 * 10 9 7 37 37 H 1.09004 * 109.47273 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.47381 * 300.00264 * 11 10 9 39 39 H 1.09003 * 109.47179 * 59.99989 * 11 10 9 40 40 H 1.09006 * 109.46833 * 210.00108 * 12 9 7 41 41 H 1.08999 * 109.47281 * 330.00699 * 12 9 7 42 42 H 0.97001 * 120.00025 * 179.97438 * 16 15 13 43 43 H 1.08997 * 109.47154 * 89.99894 * 24 23 22 44 44 H 1.09000 * 109.47089 * 209.99746 * 24 23 22 45 45 H 1.09002 * 109.46580 * 329.99312 * 24 23 22 46 46 H 1.08007 * 126.03924 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5952 1.9851 -0.8341 5 7 1.6668 2.0938 1.2627 6 6 1.5674 3.5498 1.0947 7 6 1.3166 4.1940 2.4338 8 8 1.2287 3.5077 3.4299 9 7 1.1839 5.5322 2.5236 10 6 1.2895 6.3611 1.3203 11 6 -0.0949 6.5230 0.6894 12 6 0.9340 6.1579 3.8245 13 6 2.2482 6.4972 4.4794 14 1 3.1767 6.2693 3.9770 15 6 2.2652 7.0988 5.7200 16 7 1.1346 7.3768 6.3315 17 14 3.8942 7.5188 6.5320 18 1 4.3054 8.8898 6.1366 19 1 3.7429 7.4537 8.0078 20 1 4.9292 6.5468 6.0971 21 6 3.5404 1.4449 -0.1420 22 7 4.1796 1.7538 -1.2194 23 6 5.4957 1.7044 -1.1722 24 6 6.3670 2.0386 -2.3555 25 6 5.9942 1.3327 0.0107 26 16 4.6420 1.0457 1.1031 27 1 -0.3633 0.5944 -0.8383 28 1 -0.3633 -1.0232 -0.0956 29 1 -0.3633 0.4287 0.9339 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.8062 1.7122 1.6258 33 1 0.7438 3.7823 0.4197 34 1 2.4988 3.9316 0.6767 35 1 1.6837 7.3415 1.5879 36 1 1.9601 5.8822 0.6069 37 1 -0.0162 7.1394 -0.2062 38 1 -0.4892 5.5426 0.4218 39 1 -0.7656 7.0019 1.4028 40 1 0.3522 7.0689 3.6837 41 1 0.3794 5.4670 4.4594 42 1 1.1465 7.7997 7.2044 43 1 6.6033 3.1026 -2.3438 44 1 7.2898 1.4609 -2.3019 45 1 5.8382 1.7938 -3.2767 46 1 7.0413 1.2311 0.2554 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184432941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:45 Heat of formation + Delta-G solvation = 3.096116 kcal Electronic energy + Delta-G solvation = -25762.508382 eV Core-core repulsion = 22199.856438 eV Total energy + Delta-G solvation = -3562.651943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.98297 -39.11310 -37.20299 -35.21548 -32.96375 -32.42755 -31.95429 -30.07692 -28.47178 -27.68890 -26.97775 -25.18397 -23.31427 -22.99699 -22.20077 -20.96434 -19.69715 -18.35221 -17.60257 -16.68830 -16.30167 -16.19779 -15.81053 -15.16043 -14.96163 -14.72980 -14.40528 -14.15585 -13.76429 -13.58067 -13.35758 -13.18316 -12.93141 -12.79333 -12.70778 -12.55820 -12.41055 -11.99934 -11.84309 -11.73741 -11.55354 -11.36886 -11.21384 -11.16755 -11.06055 -10.88481 -10.71126 -10.50018 -10.09854 -9.65496 -9.59995 -9.32659 -8.93753 -8.65066 -8.48283 -8.40770 -7.62456 -6.01640 -4.05816 0.73644 1.47873 1.93054 2.73810 3.31964 3.38397 3.41409 3.48122 3.58325 3.94247 4.39945 4.50363 4.65339 4.74694 4.88082 5.06290 5.08667 5.14893 5.26182 5.27496 5.32267 5.33131 5.39796 5.43956 5.48979 5.58625 5.60099 5.66052 5.71507 5.77305 5.78764 5.83673 6.01347 6.03879 6.18330 6.23670 6.47397 6.72524 7.11841 7.29615 7.47055 7.58870 7.75647 7.95377 8.27002 8.46093 8.94004 9.14712 9.59277 11.06430 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.011359 B = 0.003665 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.317020 B = 7638.901634 C = 8606.558888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C 0.162 3.838 4 H 0.076 0.924 5 N -0.666 5.666 6 C 0.042 3.958 7 C 0.506 3.494 8 O -0.526 6.526 9 N -0.599 5.599 10 C 0.106 3.894 11 C -0.168 4.168 12 C 0.248 3.752 13 C -0.524 4.524 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.057 3.943 22 N -0.481 5.481 23 C 0.062 3.938 24 C -0.076 4.076 25 C -0.287 4.287 26 S 0.187 5.813 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.361 0.639 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.031 0.969 41 H 0.043 0.957 42 H 0.263 0.737 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.290 -12.368 -18.291 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C 0.048 3.952 4 H 0.094 0.906 5 N -0.303 5.303 6 C -0.091 4.091 7 C 0.291 3.709 8 O -0.402 6.402 9 N -0.332 5.332 10 C -0.018 4.018 11 C -0.226 4.226 12 C 0.129 3.871 13 C -0.563 4.563 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.222 4.222 22 N -0.196 5.196 23 C -0.071 4.071 24 C -0.135 4.135 25 C -0.427 4.427 26 S 0.443 5.557 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.184 0.816 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.366 -12.781 -16.705 21.301 hybrid contribution 0.778 0.831 -0.730 1.352 sum 4.144 -11.950 -17.434 21.539 Atomic orbital electron populations 1.21833 0.94747 1.02511 1.02276 1.21730 0.96561 0.94255 1.03513 1.19941 0.86160 0.96278 0.92772 0.90598 1.59920 1.41642 1.03192 1.25497 1.21956 1.02093 0.88468 0.96560 1.20091 0.78145 0.82728 0.89886 1.90673 1.49713 1.62092 1.37699 1.48248 1.69870 1.05226 1.09808 1.21398 0.96232 0.97065 0.87129 1.22218 0.98451 1.01360 1.00614 1.19244 0.96854 0.92984 0.78001 1.21447 0.92798 1.39136 1.02922 0.92522 1.24922 0.96572 0.95713 0.96853 1.69931 1.25544 1.42591 1.15423 0.86517 0.83915 0.78529 0.78608 1.20697 1.21086 1.19875 1.27013 1.01032 1.02040 0.92068 1.66093 1.07556 1.18089 1.27911 1.20190 0.89274 1.01614 0.96062 1.20315 0.97081 1.02006 0.94145 1.27004 1.04618 1.13545 0.97501 1.84359 0.95446 1.60710 1.15179 0.92440 0.91810 0.92013 0.90701 0.90340 0.81562 0.92494 0.89029 0.89943 0.91992 0.92205 0.93246 0.91980 0.95113 0.93923 0.92775 0.90828 0.91012 0.90858 0.81055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.65 37.16 0.36 -0.89 16 2 C -0.12 -1.14 5.49 -26.73 -0.15 -1.29 16 3 C 0.16 1.90 2.54 -68.86 -0.18 1.72 16 4 H 0.08 0.86 7.85 -51.93 -0.41 0.46 16 5 N -0.67 -9.34 5.63 -109.22 -0.62 -9.95 16 6 C 0.04 0.63 4.49 -4.98 -0.02 0.61 16 7 C 0.51 10.48 7.73 -10.98 -0.08 10.39 16 8 O -0.53 -13.11 15.90 5.56 0.09 -13.02 16 9 N -0.60 -12.65 2.46 -175.06 -0.43 -13.08 16 10 C 0.11 1.73 5.93 -4.05 -0.02 1.70 16 11 C -0.17 -2.26 10.24 37.16 0.38 -1.87 16 12 C 0.25 6.51 5.16 -5.19 -0.03 6.48 16 13 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 17 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.06 0.75 6.05 -13.46 -0.08 0.67 16 22 N -0.48 -6.62 10.53 -8.06 -0.08 -6.71 16 23 C 0.06 0.76 6.74 -84.22 -0.57 0.19 16 24 C -0.08 -0.68 10.31 36.01 0.37 -0.31 16 25 C -0.29 -3.38 11.13 29.12 0.32 -3.05 16 26 S 0.19 2.46 22.96 -107.50 -2.47 -0.01 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.53 6.64 -51.93 -0.35 0.18 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.36 4.86 6.49 -39.29 -0.26 4.61 16 33 H 0.06 0.73 7.16 -51.93 -0.37 0.36 16 34 H 0.09 1.42 7.21 -51.93 -0.37 1.05 16 35 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 36 H 0.06 0.88 6.45 -51.93 -0.33 0.54 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.62 7.20 -51.93 -0.37 0.25 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 41 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.17 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -33.96 391.91 -9.46 -43.42 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.46 Total: 1.68 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -0.12 Total: 0.67 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.39 Total: -55.80 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.47 Total: -0.01 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.96 -9.46 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184432941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.520 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds