Wall clock time and date at job start Tue Mar 31 2020 13:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47362 * 2 1 4 4 H 1.08996 * 109.46826 * 305.74543 * 3 2 1 5 5 N 1.46901 * 109.47092 * 65.74084 * 3 2 1 6 6 C 1.46899 * 110.99871 * 205.80240 * 5 3 2 7 7 C 1.50703 * 109.46901 * 185.48523 * 6 5 3 8 8 O 1.21280 * 120.00076 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00000 * 180.27079 * 7 6 5 10 10 C 1.46492 * 119.99942 * 359.72796 * 9 7 6 11 11 C 1.53000 * 109.47251 * 89.99707 * 10 9 7 12 12 C 1.46501 * 119.99812 * 179.72280 * 9 7 6 13 13 C 1.50706 * 109.46705 * 90.00504 * 12 9 7 14 14 H 1.07998 * 120.00244 * 359.97438 * 13 12 9 15 15 C 1.37882 * 119.99694 * 179.97438 * 13 12 9 16 16 N 1.31514 * 119.99911 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99838 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46992 * 89.99912 * 17 15 13 19 19 H 1.48494 * 109.47163 * 209.99835 * 17 15 13 20 20 H 1.48499 * 109.47148 * 330.00137 * 17 15 13 21 21 C 1.50701 * 109.47551 * 185.73789 * 3 2 1 22 22 N 1.29023 * 124.91317 * 104.99707 * 21 3 2 23 23 C 1.31783 * 117.12443 * 179.97438 * 22 21 3 24 24 C 1.50702 * 122.75187 * 179.97438 * 23 22 21 25 25 C 1.33638 * 114.49789 * 0.02562 * 23 22 21 26 26 S 1.70980 * 124.91743 * 284.70113 * 21 3 2 27 27 H 1.08995 * 109.46768 * 54.66209 * 1 2 3 28 28 H 1.08999 * 109.46755 * 174.66066 * 1 2 3 29 29 H 1.08992 * 109.47304 * 294.65783 * 1 2 3 30 30 H 1.08997 * 109.47484 * 239.99834 * 2 1 3 31 31 H 1.09003 * 109.47332 * 119.99807 * 2 1 3 32 32 H 1.00907 * 110.99597 * 329.75140 * 5 3 2 33 33 H 1.08998 * 109.47202 * 65.48865 * 6 5 3 34 34 H 1.08996 * 109.46920 * 305.47969 * 6 5 3 35 35 H 1.08998 * 109.47259 * 209.99669 * 10 9 7 36 36 H 1.08999 * 109.47118 * 330.00122 * 10 9 7 37 37 H 1.09004 * 109.47273 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.47381 * 300.00264 * 11 10 9 39 39 H 1.09003 * 109.47179 * 59.99989 * 11 10 9 40 40 H 1.09006 * 109.46833 * 210.00108 * 12 9 7 41 41 H 1.08999 * 109.47281 * 330.00699 * 12 9 7 42 42 H 0.97001 * 120.00025 * 179.97438 * 16 15 13 43 43 H 1.08997 * 109.47154 * 89.99894 * 24 23 22 44 44 H 1.09000 * 109.47089 * 209.99746 * 24 23 22 45 45 H 1.09002 * 109.46580 * 329.99312 * 24 23 22 46 46 H 1.08007 * 126.03924 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5952 1.9851 -0.8341 5 7 1.6668 2.0938 1.2627 6 6 1.5674 3.5498 1.0947 7 6 1.3166 4.1940 2.4338 8 8 1.2287 3.5077 3.4299 9 7 1.1839 5.5322 2.5236 10 6 1.2895 6.3611 1.3203 11 6 -0.0949 6.5230 0.6894 12 6 0.9340 6.1579 3.8245 13 6 2.2482 6.4972 4.4794 14 1 3.1767 6.2693 3.9770 15 6 2.2652 7.0988 5.7200 16 7 1.1346 7.3768 6.3315 17 14 3.8942 7.5188 6.5320 18 1 4.3054 8.8898 6.1366 19 1 3.7429 7.4537 8.0078 20 1 4.9292 6.5468 6.0971 21 6 3.5404 1.4449 -0.1420 22 7 4.1796 1.7538 -1.2194 23 6 5.4957 1.7044 -1.1722 24 6 6.3670 2.0386 -2.3555 25 6 5.9942 1.3327 0.0107 26 16 4.6420 1.0457 1.1031 27 1 -0.3633 0.5944 -0.8383 28 1 -0.3633 -1.0232 -0.0956 29 1 -0.3633 0.4287 0.9339 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.8062 1.7122 1.6258 33 1 0.7438 3.7823 0.4197 34 1 2.4988 3.9316 0.6767 35 1 1.6837 7.3415 1.5879 36 1 1.9601 5.8822 0.6069 37 1 -0.0162 7.1394 -0.2062 38 1 -0.4892 5.5426 0.4218 39 1 -0.7656 7.0019 1.4028 40 1 0.3522 7.0689 3.6837 41 1 0.3794 5.4670 4.4594 42 1 1.1465 7.7997 7.2044 43 1 6.6033 3.1026 -2.3438 44 1 7.2898 1.4609 -2.3019 45 1 5.8382 1.7938 -3.2767 46 1 7.0413 1.2311 0.2554 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184432941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:44 Heat of formation + Delta-G solvation = -19.660474 kcal Electronic energy + Delta-G solvation = -25763.495182 eV Core-core repulsion = 22199.856438 eV Total energy + Delta-G solvation = -3563.638743 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.01671 -40.61042 -38.25451 -36.88633 -34.94465 -33.62426 -32.77265 -31.61050 -29.78442 -28.73793 -28.24230 -26.62385 -24.68282 -24.17198 -23.73318 -21.85195 -20.63311 -19.93091 -18.67117 -18.54651 -17.90593 -17.56935 -16.99047 -16.51627 -16.22777 -16.03051 -15.77453 -15.48038 -14.77498 -14.63388 -14.54275 -14.38298 -14.16962 -14.02486 -13.80818 -13.55734 -13.42067 -13.27492 -13.25539 -13.09712 -12.95301 -12.68923 -12.58407 -12.48927 -12.19389 -12.14239 -12.07808 -11.90072 -11.80309 -11.71418 -10.67237 -10.63982 -10.55492 -10.30161 -9.66042 -9.56338 -9.40709 -8.22391 -6.36777 -0.21454 0.52625 0.98157 1.34900 1.38014 1.48356 1.79599 1.84519 2.21704 2.40035 2.82641 3.06922 3.35325 3.68111 3.84082 3.95079 4.06344 4.10892 4.21841 4.30133 4.34282 4.37495 4.42523 4.45810 4.56984 4.61288 4.78540 4.80302 4.87379 4.90375 4.97384 4.98969 5.04831 5.07039 5.12911 5.22406 5.35863 5.36839 5.38818 5.57800 5.72374 5.88517 6.07535 6.23348 6.70720 6.79427 6.82077 7.29011 7.51390 8.84474 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.011359 B = 0.003665 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.317020 B = 7638.901634 C = 8606.558888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C 0.167 3.833 4 H 0.086 0.914 5 N -0.680 5.680 6 C 0.062 3.938 7 C 0.498 3.502 8 O -0.578 6.578 9 N -0.605 5.605 10 C 0.100 3.900 11 C -0.159 4.159 12 C 0.265 3.735 13 C -0.542 4.542 14 H 0.049 0.951 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.964 3.036 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.275 1.275 21 C 0.051 3.949 22 N -0.494 5.494 23 C 0.046 3.954 24 C -0.073 4.073 25 C -0.282 4.282 26 S 0.147 5.853 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.363 0.637 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.022 0.978 41 H -0.002 1.002 42 H 0.267 0.733 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 -12.405 -20.656 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C 0.054 3.946 4 H 0.104 0.896 5 N -0.317 5.317 6 C -0.070 4.070 7 C 0.286 3.714 8 O -0.458 6.458 9 N -0.337 5.337 10 C -0.023 4.023 11 C -0.217 4.217 12 C 0.144 3.856 13 C -0.581 4.581 14 H 0.067 0.933 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.789 3.211 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.200 1.200 21 C -0.227 4.227 22 N -0.210 5.210 23 C -0.086 4.086 24 C -0.133 4.133 25 C -0.421 4.421 26 S 0.402 5.598 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.187 0.813 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.040 0.960 41 H 0.016 0.984 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.557 -12.801 -19.133 23.467 hybrid contribution 0.413 0.825 -0.026 0.923 sum 4.971 -11.976 -19.158 23.134 Atomic orbital electron populations 1.21814 0.93541 1.03465 1.02185 1.21694 0.97493 0.92704 1.03514 1.20022 0.85424 0.97437 0.91729 0.89594 1.59830 1.42059 1.02544 1.27244 1.21762 1.03259 0.88929 0.93075 1.21075 0.76634 0.82220 0.91508 1.90639 1.51905 1.63191 1.40061 1.48268 1.69666 1.06175 1.09553 1.21700 0.98829 0.96004 0.85717 1.22140 0.95879 1.02582 1.01109 1.18667 0.95317 0.91546 0.80082 1.21700 0.93246 1.39485 1.03664 0.93306 1.25812 1.00310 0.95403 0.97395 1.70043 1.27720 1.43051 1.15882 0.85464 0.79177 0.78877 0.77602 1.18791 1.20440 1.20026 1.27271 1.01597 1.02020 0.91786 1.66147 1.08410 1.18430 1.28021 1.20756 0.89210 1.01363 0.97267 1.20413 0.97375 1.02696 0.92782 1.27271 1.05170 1.12935 0.96726 1.84501 0.97100 1.61604 1.16568 0.91590 0.90556 0.92804 0.89916 0.91075 0.81316 0.89149 0.88738 0.91081 0.89107 0.88769 0.92016 0.94003 0.96041 0.98367 0.92400 0.90283 0.88846 0.90623 0.78724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.65 71.98 0.69 -1.47 16 2 C -0.12 -2.00 5.49 30.59 0.17 -1.83 16 3 C 0.17 3.65 2.54 44.17 0.11 3.76 16 4 H 0.09 1.73 7.85 -2.39 -0.02 1.71 16 5 N -0.68 -18.54 5.63 -499.47 -2.81 -21.35 16 6 C 0.06 1.80 4.49 85.56 0.38 2.18 16 7 C 0.50 20.84 7.73 87.66 0.68 21.52 16 8 O -0.58 -30.00 15.90 -3.03 -0.05 -30.05 16 9 N -0.60 -25.94 2.46 -826.14 -2.03 -27.97 16 10 C 0.10 3.13 5.93 86.38 0.51 3.65 16 11 C -0.16 -3.93 10.24 71.98 0.74 -3.19 16 12 C 0.27 14.52 5.16 85.63 0.44 14.96 16 13 C -0.54 -31.98 9.39 25.60 0.24 -31.74 16 14 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 15 C 0.01 0.58 5.46 84.66 0.46 1.04 16 16 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 17 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 21 C 0.05 1.31 6.05 88.52 0.54 1.84 16 22 N -0.49 -12.77 10.53 -179.40 -1.89 -14.66 16 23 C 0.05 1.05 6.74 41.52 0.28 1.33 16 24 C -0.07 -1.13 10.31 71.24 0.73 -0.39 16 25 C -0.28 -6.20 11.13 66.78 0.74 -5.46 16 26 S 0.15 3.81 22.96 -56.49 -1.30 2.51 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.86 6.64 -2.39 -0.02 0.84 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.36 9.66 6.49 -89.69 -0.58 9.07 16 33 H 0.09 2.04 7.16 -2.39 -0.02 2.02 16 34 H 0.09 2.74 7.21 -2.39 -0.02 2.72 16 35 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 36 H 0.09 2.33 6.45 -2.39 -0.02 2.31 16 37 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.06 1.37 7.20 -2.38 -0.02 1.36 16 39 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.02 1.20 8.07 -2.38 -0.02 1.18 16 41 H 0.00 -0.11 7.42 -2.39 -0.02 -0.13 16 42 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 1.01 8.12 -2.39 -0.02 0.99 16 45 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 46 H 0.20 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -76.40 391.91 1.35 -75.05 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.39 Total: 18.86 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 6.72 Total: 6.20 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -6.45 Total: -120.41 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.05 Total: -30.05 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.30 Total: 2.51 kcal Total: -76.40 1.35 -75.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184432941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.389 kcal (2) G-P(sol) polarization free energy of solvation -76.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds