Wall clock time and date at job start Tue Mar 31 2020 14:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.42899 * 2 1 4 4 C 1.55289 * 109.43051 * 240.09902 * 2 1 3 5 5 C 1.45392 * 109.85030 * 168.69114 * 4 2 1 6 6 N 1.46827 * 115.64368 * 63.58167 * 5 4 2 7 7 C 1.46893 * 111.00120 * 142.12850 * 6 5 4 8 8 C 1.50706 * 109.47176 * 169.99875 * 7 6 5 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47598 * 90.00303 * 11 10 8 13 13 H 1.08005 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99774 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00058 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46761 * 60.00209 * 16 14 12 18 18 H 1.48496 * 109.46664 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47077 * 300.00223 * 16 14 12 20 20 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.46986 * 90.00387 * 20 10 8 22 22 C 1.47205 * 109.46941 * 179.97438 * 21 20 10 23 23 N 9.35795 * 149.13141 * 247.15293 * 2 1 3 24 24 C 1.45587 * 105.38096 * 262.38224 * 6 5 4 25 25 C 1.54645 * 108.47093 * 107.72336 * 24 6 5 26 26 S 1.79403 * 109.42702 * 119.84426 * 2 1 3 27 27 H 1.09004 * 109.47404 * 179.89416 * 1 2 3 28 28 H 1.09004 * 109.47460 * 299.90015 * 1 2 3 29 29 H 1.08998 * 109.47166 * 59.89750 * 1 2 3 30 30 H 1.09003 * 109.40908 * 48.57673 * 4 2 1 31 31 H 1.09001 * 109.34732 * 288.76431 * 4 2 1 32 32 H 1.09000 * 108.24575 * 301.98020 * 5 4 2 33 33 H 1.09005 * 108.24471 * 185.18457 * 5 4 2 34 34 H 1.09001 * 109.46739 * 50.00284 * 7 6 5 35 35 H 1.09000 * 109.47767 * 290.00543 * 7 6 5 36 36 H 1.09008 * 109.47096 * 209.99661 * 11 10 8 37 37 H 1.09003 * 109.47776 * 329.99537 * 11 10 8 38 38 H 0.97002 * 119.99965 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.46971 * 209.99938 * 20 10 8 40 40 H 1.08993 * 109.47768 * 330.00002 * 20 10 8 41 41 H 1.08996 * 109.46936 * 299.99297 * 21 20 10 42 42 H 1.08997 * 109.47532 * 59.99922 * 21 20 10 43 43 H 1.08997 * 109.63334 * 227.42024 * 24 6 5 44 44 H 1.08999 * 109.63920 * 348.02746 * 24 6 5 45 45 H 1.08995 * 109.25911 * 200.98440 * 25 24 6 46 46 H 1.09004 * 109.25517 * 81.53610 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8925 1.0280 0.0000 4 6 2.0465 -0.7300 -1.2695 5 6 3.4754 -0.5073 -1.4201 6 7 4.3197 -1.0521 -0.3495 7 6 5.5722 -1.5954 -0.8918 8 6 6.5119 -1.9183 0.2413 9 8 6.1715 -1.7162 1.3876 10 7 7.7305 -2.4316 -0.0194 11 6 8.6437 -2.7460 1.0822 12 6 8.4190 -4.1669 1.5311 13 1 7.6704 -4.7749 1.0448 14 6 9.1690 -4.6908 2.5627 15 7 10.0801 -3.9504 3.1552 16 14 8.8899 -6.4519 3.1196 17 1 9.1448 -7.3759 1.9854 18 1 9.8156 -6.7705 4.2360 19 1 7.4869 -6.6089 3.5802 20 6 8.1417 -2.6752 -1.4041 21 6 8.8312 -1.4269 -1.9585 22 6 9.2450 -1.6718 -3.3498 23 7 9.5623 -1.8642 -4.4246 24 6 4.5802 0.0672 0.5443 25 6 3.7698 -0.1451 1.8442 26 16 2.1267 -0.8420 1.4675 27 1 -0.3634 -1.0277 -0.0019 28 1 -0.3634 0.5123 0.8909 29 1 -0.3633 0.5154 -0.8890 30 1 1.5256 -0.3448 -2.1461 31 1 1.8547 -1.7988 -1.1747 32 1 3.6490 0.5672 -1.4783 33 1 3.7923 -0.9508 -2.3640 34 1 6.0341 -0.8577 -1.5479 35 1 5.3599 -2.5025 -1.4576 36 1 9.6737 -2.6303 0.7445 37 1 8.4559 -2.0679 1.9147 38 1 10.6075 -4.3188 3.8811 39 1 8.8341 -3.5165 -1.4349 40 1 7.2644 -2.9045 -2.0088 41 1 8.1388 -0.5856 -1.9278 42 1 9.7086 -1.1976 -1.3539 43 1 5.6439 0.1090 0.7785 44 1 4.2703 0.9969 0.0671 45 1 3.6469 0.8118 2.3515 46 1 4.3102 -0.8307 2.4968 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192178642.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:59 Heat of formation + Delta-G solvation = 13.750323 kcal Electronic energy + Delta-G solvation = -26203.006791 eV Core-core repulsion = 22640.816848 eV Total energy + Delta-G solvation = -3562.189942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.99806 -38.13490 -36.86648 -35.37842 -34.50864 -32.91080 -31.08139 -30.84823 -30.07759 -27.69718 -25.78981 -24.06860 -23.44679 -22.83527 -22.00292 -20.81464 -18.61102 -17.66158 -16.81757 -16.49206 -16.34311 -16.03791 -15.45956 -15.25901 -14.90466 -14.71889 -14.57022 -14.27787 -13.94974 -13.73262 -13.46367 -13.36059 -13.10776 -12.71541 -12.56928 -12.47643 -12.27581 -12.03233 -11.87597 -11.70897 -11.68280 -11.45978 -11.31319 -11.27754 -11.02616 -10.87429 -10.79185 -10.61658 -10.39228 -10.19230 -9.71920 -9.45007 -8.93652 -8.48774 -8.47317 -7.87495 -7.17127 -6.09728 -4.14172 1.92761 2.66195 2.74489 2.99283 3.21123 3.31351 3.35895 3.39921 3.46980 3.87723 4.19530 4.40259 4.42347 4.78357 4.84853 4.89596 4.96828 5.03716 5.06977 5.12541 5.18067 5.25958 5.32575 5.34549 5.39426 5.49779 5.53717 5.61031 5.67075 5.70952 5.76857 5.77938 5.87989 5.99781 6.02031 6.12220 6.31485 6.79139 6.95325 7.02378 7.31180 7.40050 7.51464 7.86435 8.15586 8.20846 8.81441 8.95678 9.51709 10.98338 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.010003 B = 0.004114 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.593607 B = 6804.686234 C = 8887.941057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 H 0.075 0.925 4 C -0.103 4.103 5 C 0.039 3.961 6 N -0.482 5.482 7 C 0.027 3.973 8 C 0.507 3.493 9 O -0.513 6.513 10 N -0.597 5.597 11 C 0.247 3.753 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.117 3.883 21 C -0.049 4.049 22 C 0.216 3.784 23 N -0.444 5.444 24 C 0.038 3.962 25 C -0.061 4.061 26 S -0.238 6.238 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.091 0.909 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.751 10.698 -9.847 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.194 4.194 3 H 0.094 0.906 4 C -0.143 4.143 5 C -0.089 4.089 6 N -0.206 5.206 7 C -0.104 4.104 8 C 0.293 3.707 9 O -0.388 6.388 10 N -0.329 5.329 11 C 0.129 3.871 12 C -0.567 4.567 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.009 4.009 21 C -0.091 4.091 22 C -0.102 4.102 23 N -0.122 5.122 24 C -0.092 4.092 25 C -0.209 4.209 26 S -0.010 6.010 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.135 0.865 43 H 0.109 0.891 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.063 9.336 -9.826 18.824 hybrid contribution 1.061 0.623 -0.455 1.312 sum -12.002 9.959 -10.280 18.679 Atomic orbital electron populations 1.21601 0.92377 1.02738 1.02032 1.23228 0.98895 1.00794 0.96482 0.90614 1.20849 0.94875 1.02358 0.96254 1.21045 0.95156 0.98023 0.94705 1.63073 1.13260 1.29909 1.14338 1.22351 0.90509 1.01177 0.96365 1.20108 0.82066 0.78502 0.90000 1.90660 1.74126 1.51948 1.22108 1.48228 1.15924 1.62005 1.06764 1.19327 0.87160 0.96678 0.83973 1.21373 1.20122 0.97412 1.17811 0.92381 1.24898 0.94964 0.98043 0.95955 1.69904 1.22813 1.36543 1.24096 0.86584 0.78278 0.84511 0.78253 1.20260 1.21236 1.20075 1.21303 1.00147 0.95706 0.83792 1.19897 1.03637 1.01578 0.83987 1.29146 0.93086 0.93186 0.94795 1.81261 1.09451 1.08682 1.12760 1.22819 1.02152 0.90638 0.93552 1.23914 0.93717 1.03200 1.00094 1.86057 1.20694 1.60117 1.34158 0.91849 0.91871 0.91870 0.91020 0.89899 0.94130 0.91846 0.92590 0.87929 0.94842 0.93602 0.92633 0.88658 0.90703 0.87869 0.86463 0.89128 0.93931 0.91301 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 9.17 37.16 0.34 -0.76 16 2 C -0.06 -0.67 2.66 -25.52 -0.07 -0.73 16 3 H 0.08 0.75 7.97 -51.77 -0.41 0.34 16 4 C -0.10 -0.98 5.08 -29.10 -0.15 -1.13 16 5 C 0.04 0.38 4.72 -7.44 -0.04 0.35 16 6 N -0.48 -6.25 3.89 -240.68 -0.94 -7.19 16 7 C 0.03 0.34 3.83 -4.98 -0.02 0.32 16 8 C 0.51 8.72 6.95 -10.98 -0.08 8.64 16 9 O -0.51 -10.88 12.24 5.56 0.07 -10.81 16 10 N -0.60 -10.31 2.46 -175.06 -0.43 -10.74 16 11 C 0.25 5.65 5.16 -5.20 -0.03 5.62 16 12 C -0.53 -13.89 9.39 -34.44 -0.32 -14.22 16 13 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 16 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.12 1.47 5.17 -4.04 -0.02 1.45 16 21 C -0.05 -0.48 6.03 -29.51 -0.18 -0.66 16 22 C 0.22 2.48 15.44 -20.72 -0.32 2.16 16 23 N -0.44 -6.31 18.54 42.20 0.78 -5.53 16 24 C 0.04 0.50 4.45 -3.67 -0.02 0.49 16 25 C -0.06 -0.87 6.66 38.02 0.25 -0.61 16 26 S -0.24 -3.32 20.44 -107.50 -2.20 -5.51 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 31 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 32 H 0.04 0.37 6.47 -51.93 -0.34 0.04 16 33 H 0.06 0.55 7.58 -51.93 -0.39 0.15 16 34 H 0.06 0.54 7.12 -51.93 -0.37 0.17 16 35 H 0.10 1.19 7.40 -51.93 -0.38 0.81 16 36 H 0.03 0.76 8.07 -51.92 -0.42 0.34 16 37 H 0.05 1.20 7.42 -51.93 -0.39 0.81 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 40 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 41 H 0.10 0.79 7.22 -51.93 -0.38 0.41 16 42 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.09 1.34 5.50 -51.93 -0.29 1.06 16 44 H 0.04 0.48 6.41 -51.93 -0.33 0.14 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.12 2.10 6.93 -51.93 -0.36 1.74 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -31.76 377.53 -9.35 -41.11 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.31 Total: -1.26 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.73 Total: 2.55 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.15 Total: -47.99 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -2.20 Total: -5.51 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.76 -9.35 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192178642.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.864 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds