Wall clock time and date at job start Tue Mar 31 2020 13:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46913 * 2 1 4 4 C 1.53000 * 109.47016 * 179.97438 * 3 2 1 5 5 S 1.81404 * 109.47086 * 179.97438 * 4 3 2 6 6 C 1.81407 * 102.99760 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47122 * 55.00513 * 6 5 4 8 8 C 1.52997 * 109.47294 * 295.00048 * 6 5 4 9 9 C 1.50704 * 109.46484 * 175.00103 * 6 5 4 10 10 O 1.21291 * 120.00259 * 25.00159 * 9 6 5 11 11 N 1.34779 * 119.99258 * 204.99816 * 9 6 5 12 12 C 1.40162 * 119.99437 * 180.02562 * 11 9 6 13 13 C 1.40415 * 125.97631 * 0.31570 * 12 11 9 14 14 C 1.35232 * 107.86655 * 180.13084 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84998 * 14 13 12 16 16 N 1.34968 * 107.86163 * 359.58679 * 14 13 12 17 17 C 1.46509 * 125.97450 * 180.23081 * 16 14 13 18 18 C 1.50698 * 109.47025 * 89.99735 * 17 16 14 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47086 * 60.00203 * 22 20 18 24 24 H 1.48506 * 109.46840 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47109 * 299.99717 * 22 20 18 26 26 N 1.31221 * 125.97269 * 179.97438 * 12 11 9 27 27 H 1.08992 * 109.47278 * 300.00322 * 1 2 3 28 28 H 1.09001 * 109.46605 * 60.00511 * 1 2 3 29 29 H 1.08998 * 109.46498 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47710 * 239.99993 * 2 1 3 31 31 H 1.09000 * 109.47068 * 119.99231 * 2 1 3 32 32 H 1.09005 * 109.47316 * 60.00091 * 3 2 1 33 33 H 1.08991 * 109.47112 * 299.99175 * 3 2 1 34 34 H 1.09002 * 109.47277 * 60.00065 * 4 3 2 35 35 H 1.09000 * 109.47710 * 300.00032 * 4 3 2 36 36 H 1.09001 * 109.47024 * 59.99992 * 8 6 5 37 37 H 1.09000 * 109.46961 * 180.02562 * 8 6 5 38 38 H 1.08999 * 109.46915 * 300.00355 * 8 6 5 39 39 H 0.96991 * 120.00480 * 0.02562 * 11 9 6 40 40 H 1.07995 * 126.06342 * 0.02562 * 13 12 11 41 41 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 42 42 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 43 43 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 44 44 H 1.08994 * 109.46750 * 210.00045 * 17 16 14 45 45 H 1.09004 * 109.46474 * 329.99737 * 17 16 14 46 46 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 16 4.1746 3.1529 -0.0001 6 6 5.9771 2.9484 0.0000 7 1 6.2717 2.3215 -0.8416 8 6 6.4152 2.2858 1.3076 9 6 6.6357 4.2982 -0.1244 10 8 6.0488 5.2953 0.2399 11 7 7.8768 4.3974 -0.6405 12 6 8.4895 5.6527 -0.7558 13 6 7.9311 6.8817 -0.3694 14 6 8.8318 7.8519 -0.6458 15 6 8.6509 9.3273 -0.3976 16 7 9.9237 7.2635 -1.1779 17 6 11.1424 7.9481 -1.6169 18 6 12.1129 8.0325 -0.4671 19 1 11.8487 7.6174 0.4943 20 6 13.3387 8.6388 -0.6429 21 7 13.6607 9.1438 -1.8137 22 14 14.5421 8.7429 0.7822 23 1 14.8822 7.3731 1.2438 24 1 15.7773 9.4368 0.3372 25 1 13.9231 9.5020 1.8983 26 7 9.6878 5.8842 -1.2378 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9289 0.8908 36 1 5.9388 1.3095 1.3976 37 1 7.4983 2.1634 1.3078 38 1 6.1205 2.9128 2.1491 39 1 8.3459 3.6001 -0.9322 40 1 6.9548 7.0267 0.0690 41 1 8.2078 9.7922 -1.2782 42 1 9.6201 9.7831 -0.1949 43 1 7.9941 9.4736 0.4599 44 1 11.5970 7.3910 -2.4360 45 1 10.8923 8.9534 -1.9559 46 1 14.5229 9.5706 -1.9372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271122062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:53 Heat of formation + Delta-G solvation = 19.282848 kcal Electronic energy + Delta-G solvation = -24304.631688 eV Core-core repulsion = 20742.681653 eV Total energy + Delta-G solvation = -3561.950034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78754 -39.40373 -36.07609 -34.89556 -33.74706 -33.16429 -31.37028 -30.81026 -30.55374 -26.83173 -26.36042 -25.09732 -24.42813 -22.98322 -21.73119 -21.23721 -19.86575 -19.21964 -17.02862 -16.80675 -16.69382 -16.12501 -15.92220 -15.47655 -15.24492 -14.77981 -14.46958 -14.36317 -14.10092 -14.04699 -13.80669 -13.21283 -13.06227 -12.90780 -12.48376 -12.42950 -12.31676 -12.20423 -12.10214 -11.88379 -11.68476 -11.66220 -11.42609 -11.13029 -11.09889 -11.04287 -10.83431 -10.49055 -10.25589 -10.07682 -9.96524 -9.62416 -9.56333 -8.65487 -7.97076 -7.87789 -7.48922 -6.26796 -4.34738 1.13252 2.17299 2.33127 2.72757 2.89347 3.22347 3.26231 3.30404 3.66891 3.78707 4.28421 4.33959 4.41714 4.44660 4.51811 4.65195 4.69179 4.78868 5.05427 5.06739 5.12523 5.21413 5.31009 5.34403 5.35565 5.43356 5.50286 5.68566 5.69232 5.74147 5.78236 5.88190 5.92701 6.09735 6.20589 6.46001 6.51988 6.68699 6.91735 7.03490 7.39283 7.59026 7.65592 7.87287 8.03041 8.15363 8.61916 8.73087 9.31677 10.80396 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.032444 B = 0.001999 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.806186 B =14004.578215 C =14353.117266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.104 4.104 4 C -0.105 4.105 5 S -0.183 6.183 6 C -0.089 4.089 7 H 0.108 0.892 8 C -0.143 4.143 9 C 0.539 3.461 10 O -0.494 6.494 11 N -0.626 5.626 12 C 0.263 3.737 13 C -0.289 4.289 14 C 0.093 3.907 15 C -0.089 4.089 16 N -0.316 5.316 17 C 0.258 3.742 18 C -0.538 4.538 19 H 0.064 0.936 20 C 0.066 3.934 21 N -0.891 5.891 22 Si 0.906 3.094 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.274 1.274 26 N -0.319 5.319 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.410 0.590 40 H 0.159 0.841 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.671 -16.277 3.229 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.142 4.142 4 C -0.253 4.253 5 S 0.045 5.955 6 C -0.221 4.221 7 H 0.127 0.873 8 C -0.202 4.202 9 C 0.322 3.678 10 O -0.366 6.366 11 N -0.273 5.273 12 C 0.010 3.990 13 C -0.320 4.320 14 C -0.039 4.039 15 C -0.147 4.147 16 N -0.098 5.098 17 C 0.141 3.859 18 C -0.576 4.576 19 H 0.082 0.918 20 C -0.137 4.137 21 N -0.529 5.529 22 Si 0.733 3.267 23 H -0.200 1.200 24 H -0.209 1.209 25 H -0.199 1.199 26 N -0.150 5.150 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.245 0.755 40 H 0.177 0.823 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.374 -14.960 2.831 25.434 hybrid contribution 1.256 -1.285 0.771 1.955 sum -19.117 -16.244 3.602 25.344 Atomic orbital electron populations 1.21768 0.95458 1.01738 1.02102 1.21520 0.96152 0.95954 1.02213 1.21334 0.91719 0.97554 1.03620 1.23581 0.99947 0.96830 1.04957 1.87486 1.00379 1.09719 1.97900 1.23229 0.97003 0.98195 1.03673 0.87336 1.22017 1.02440 1.00833 0.94944 1.19560 0.80686 0.89843 0.77742 1.90696 1.62642 1.37034 1.46206 1.42319 1.15875 1.07064 1.62090 1.18941 0.92554 0.85650 1.01818 1.21248 1.03876 0.89195 1.17719 1.21068 0.88146 0.96414 0.98241 1.20386 1.03680 0.88654 1.02010 1.49007 1.13776 1.02060 1.44955 1.19699 0.77721 0.91713 0.96780 1.21285 1.00328 1.39012 0.97017 0.91792 1.24923 0.97736 0.94685 0.96369 1.69905 1.22890 1.37523 1.22567 0.86413 0.79860 0.78519 0.81878 1.20009 1.20932 1.19912 1.77249 1.14421 0.95351 1.27974 0.92557 0.92570 0.92634 0.91844 0.91838 0.90830 0.90891 0.90139 0.89932 0.91186 0.90902 0.90301 0.75456 0.82325 0.91027 0.89873 0.90573 0.92986 0.92741 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.60 5.93 -26.73 -0.16 -0.76 16 3 C -0.10 -0.66 5.22 -26.73 -0.14 -0.80 16 4 C -0.10 -0.73 5.64 37.16 0.21 -0.52 16 5 S -0.18 -2.00 20.46 -107.50 -2.20 -4.20 16 6 C -0.09 -0.90 3.18 -27.88 -0.09 -0.99 16 7 H 0.11 0.84 8.14 -51.92 -0.42 0.41 16 8 C -0.14 -1.19 9.08 37.16 0.34 -0.85 16 9 C 0.54 7.89 6.92 -10.98 -0.08 7.81 16 10 O -0.49 -8.98 13.27 5.55 0.07 -8.91 16 11 N -0.63 -9.66 5.45 -11.13 -0.06 -9.72 16 12 C 0.26 5.36 8.11 -154.38 -1.25 4.11 16 13 C -0.29 -6.03 9.52 -39.83 -0.38 -6.41 16 14 C 0.09 1.97 6.92 -82.28 -0.57 1.40 16 15 C -0.09 -1.54 9.89 36.01 0.36 -1.18 16 16 N -0.32 -7.50 3.59 -58.32 -0.21 -7.71 16 17 C 0.26 6.63 5.81 -5.19 -0.03 6.60 16 18 C -0.54 -14.79 9.39 -34.44 -0.32 -15.11 16 19 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 20 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 21 N -0.89 -24.94 13.29 55.43 0.74 -24.21 16 22 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 N -0.32 -7.37 12.59 31.44 0.40 -6.97 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.08 0.49 7.14 -51.92 -0.37 0.12 16 36 H 0.07 0.43 6.92 -51.93 -0.36 0.07 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.41 4.99 8.82 -40.82 -0.36 4.63 16 40 H 0.16 3.24 5.92 -52.49 -0.31 2.93 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -32.35 394.75 -9.84 -42.19 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.66 Total: 2.92 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.84 Total: -5.37 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.86 Total: -48.62 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.07 Total: -8.91 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -2.20 Total: -4.20 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.35 -9.84 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271122062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.475 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds