Wall clock time and date at job start Tue Mar 31 2020 13:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46913 * 2 1 4 4 C 1.53000 * 109.47016 * 179.97438 * 3 2 1 5 5 S 1.81404 * 109.47086 * 179.97438 * 4 3 2 6 6 C 1.81407 * 102.99760 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47122 * 55.00513 * 6 5 4 8 8 C 1.52997 * 109.47294 * 295.00048 * 6 5 4 9 9 C 1.50704 * 109.46484 * 175.00103 * 6 5 4 10 10 O 1.21291 * 120.00259 * 25.00159 * 9 6 5 11 11 N 1.34779 * 119.99258 * 204.99816 * 9 6 5 12 12 C 1.40162 * 119.99437 * 180.02562 * 11 9 6 13 13 C 1.40415 * 125.97631 * 0.31570 * 12 11 9 14 14 C 1.35232 * 107.86655 * 180.13084 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84998 * 14 13 12 16 16 N 1.34968 * 107.86163 * 359.58679 * 14 13 12 17 17 C 1.46509 * 125.97450 * 180.23081 * 16 14 13 18 18 C 1.50698 * 109.47025 * 89.99735 * 17 16 14 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47086 * 60.00203 * 22 20 18 24 24 H 1.48506 * 109.46840 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47109 * 299.99717 * 22 20 18 26 26 N 1.31221 * 125.97269 * 179.97438 * 12 11 9 27 27 H 1.08992 * 109.47278 * 300.00322 * 1 2 3 28 28 H 1.09001 * 109.46605 * 60.00511 * 1 2 3 29 29 H 1.08998 * 109.46498 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47710 * 239.99993 * 2 1 3 31 31 H 1.09000 * 109.47068 * 119.99231 * 2 1 3 32 32 H 1.09005 * 109.47316 * 60.00091 * 3 2 1 33 33 H 1.08991 * 109.47112 * 299.99175 * 3 2 1 34 34 H 1.09002 * 109.47277 * 60.00065 * 4 3 2 35 35 H 1.09000 * 109.47710 * 300.00032 * 4 3 2 36 36 H 1.09001 * 109.47024 * 59.99992 * 8 6 5 37 37 H 1.09000 * 109.46961 * 180.02562 * 8 6 5 38 38 H 1.08999 * 109.46915 * 300.00355 * 8 6 5 39 39 H 0.96991 * 120.00480 * 0.02562 * 11 9 6 40 40 H 1.07995 * 126.06342 * 0.02562 * 13 12 11 41 41 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 42 42 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 43 43 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 44 44 H 1.08994 * 109.46750 * 210.00045 * 17 16 14 45 45 H 1.09004 * 109.46474 * 329.99737 * 17 16 14 46 46 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 16 4.1746 3.1529 -0.0001 6 6 5.9771 2.9484 0.0000 7 1 6.2717 2.3215 -0.8416 8 6 6.4152 2.2858 1.3076 9 6 6.6357 4.2982 -0.1244 10 8 6.0488 5.2953 0.2399 11 7 7.8768 4.3974 -0.6405 12 6 8.4895 5.6527 -0.7558 13 6 7.9311 6.8817 -0.3694 14 6 8.8318 7.8519 -0.6458 15 6 8.6509 9.3273 -0.3976 16 7 9.9237 7.2635 -1.1779 17 6 11.1424 7.9481 -1.6169 18 6 12.1129 8.0325 -0.4671 19 1 11.8487 7.6174 0.4943 20 6 13.3387 8.6388 -0.6429 21 7 13.6607 9.1438 -1.8137 22 14 14.5421 8.7429 0.7822 23 1 14.8822 7.3731 1.2438 24 1 15.7773 9.4368 0.3372 25 1 13.9231 9.5020 1.8983 26 7 9.6878 5.8842 -1.2378 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9289 0.8908 36 1 5.9388 1.3095 1.3976 37 1 7.4983 2.1634 1.3078 38 1 6.1205 2.9128 2.1491 39 1 8.3459 3.6001 -0.9322 40 1 6.9548 7.0267 0.0690 41 1 8.2078 9.7922 -1.2782 42 1 9.6201 9.7831 -0.1949 43 1 7.9941 9.4736 0.4599 44 1 11.5970 7.3910 -2.4360 45 1 10.8923 8.9534 -1.9559 46 1 14.5229 9.5706 -1.9372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271122062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:52 Heat of formation + Delta-G solvation = 1.347425 kcal Electronic energy + Delta-G solvation = -24305.409426 eV Core-core repulsion = 20742.681653 eV Total energy + Delta-G solvation = -3562.727772 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.36173 -40.75479 -36.54478 -36.38998 -35.38502 -34.39607 -32.89465 -32.58624 -31.04419 -28.68239 -27.91177 -26.19087 -24.93635 -24.75735 -22.78475 -21.97483 -21.35752 -20.72358 -18.81239 -18.18437 -17.99129 -17.35789 -16.82507 -16.69845 -16.56658 -16.14054 -15.83841 -15.45239 -15.36987 -14.77469 -14.61091 -14.37612 -14.31540 -13.92965 -13.83383 -13.69284 -13.59608 -13.51989 -13.15969 -13.07456 -12.82898 -12.79979 -12.68523 -12.35524 -12.25426 -12.14626 -12.11339 -11.64796 -11.59294 -11.46706 -11.39013 -10.97770 -10.77213 -10.73897 -9.62893 -9.19214 -8.70287 -8.33588 -6.51386 0.31272 0.86808 1.26593 1.38661 1.39392 1.42409 1.49294 1.56999 2.13631 2.24297 2.37402 2.96307 3.35891 3.76031 3.84512 3.85594 3.94330 3.96561 4.12054 4.23240 4.38001 4.43550 4.54625 4.62778 4.66883 4.71495 4.74191 4.75537 4.85155 4.88083 4.95163 4.96443 4.97405 5.06960 5.09864 5.12724 5.22405 5.27601 5.36654 5.48084 5.52410 5.79707 5.87963 6.17614 6.22986 6.60211 6.88883 7.03300 7.19596 8.72332 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.032444 B = 0.001999 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.806186 B =14004.578215 C =14353.117266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.102 4.102 4 C -0.085 4.085 5 S -0.250 6.250 6 C -0.071 4.071 7 H 0.140 0.860 8 C -0.140 4.140 9 C 0.537 3.463 10 O -0.530 6.530 11 N -0.617 5.617 12 C 0.273 3.727 13 C -0.300 4.300 14 C 0.089 3.911 15 C -0.086 4.086 16 N -0.341 5.341 17 C 0.275 3.725 18 C -0.555 4.555 19 H 0.050 0.950 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.970 3.030 23 H -0.275 1.275 24 H -0.272 1.272 25 H -0.266 1.266 26 N -0.355 5.355 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.426 0.574 40 H 0.164 0.836 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.025 0.975 45 H 0.052 0.948 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.246 -18.086 4.199 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.141 4.141 4 C -0.233 4.233 5 S -0.023 6.023 6 C -0.203 4.203 7 H 0.158 0.842 8 C -0.199 4.199 9 C 0.322 3.678 10 O -0.404 6.404 11 N -0.268 5.268 12 C 0.019 3.981 13 C -0.331 4.331 14 C -0.042 4.042 15 C -0.144 4.144 16 N -0.123 5.123 17 C 0.156 3.844 18 C -0.594 4.594 19 H 0.068 0.932 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.794 3.206 23 H -0.200 1.200 24 H -0.197 1.197 25 H -0.191 1.191 26 N -0.185 5.185 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.265 0.735 40 H 0.181 0.819 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.044 0.956 45 H 0.070 0.930 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.966 -16.798 3.797 27.132 hybrid contribution 1.278 -0.790 0.458 1.570 sum -19.688 -17.588 4.255 26.740 Atomic orbital electron populations 1.21785 0.95482 1.02144 1.01846 1.21490 0.96105 0.94810 1.02923 1.21334 0.91521 0.98427 1.02841 1.23621 0.99802 0.93384 1.06453 1.87778 1.01833 1.14521 1.98123 1.23180 0.95632 0.95422 1.06031 0.84195 1.22043 1.03259 1.01618 0.92972 1.20455 0.79856 0.91364 0.76086 1.90671 1.63350 1.38913 1.47472 1.42455 1.16251 1.05937 1.62108 1.19272 0.91653 0.87541 0.99644 1.21413 1.04019 0.89507 1.18178 1.21733 0.87224 0.98295 0.96898 1.20507 1.03623 0.86194 1.04083 1.48804 1.14004 1.02638 1.46871 1.19264 0.78353 0.91238 0.95510 1.21405 1.01442 1.39620 0.96890 0.93219 1.25720 0.99144 0.93935 0.98900 1.69988 1.23556 1.37716 1.24210 0.85421 0.77844 0.78485 0.78829 1.20046 1.19700 1.19083 1.77171 1.16025 0.95316 1.29999 0.92816 0.92903 0.91886 0.91157 0.91033 0.91648 0.91792 0.88613 0.88298 0.88259 0.89985 0.92036 0.73547 0.81870 0.88866 0.91290 0.88024 0.95646 0.93007 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.11 -0.89 5.93 30.60 0.18 -0.71 16 3 C -0.10 -1.14 5.22 30.60 0.16 -0.98 16 4 C -0.08 -0.95 5.64 71.98 0.41 -0.55 16 5 S -0.25 -5.16 20.46 -56.49 -1.16 -6.32 16 6 C -0.07 -1.29 3.18 29.85 0.09 -1.19 16 7 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 8 C -0.14 -1.95 9.08 71.98 0.65 -1.29 16 9 C 0.54 15.21 6.92 87.66 0.61 15.82 16 10 O -0.53 -19.24 13.27 -3.06 -0.04 -19.28 16 11 N -0.62 -18.55 5.45 -307.50 -1.68 -20.22 16 12 C 0.27 11.18 8.11 133.32 1.08 12.26 16 13 C -0.30 -12.58 9.52 22.11 0.21 -12.37 16 14 C 0.09 3.82 6.92 41.38 0.29 4.11 16 15 C -0.09 -2.94 9.89 71.24 0.70 -2.23 16 16 N -0.34 -16.63 3.59 -338.43 -1.22 -17.85 16 17 C 0.28 14.62 5.81 85.63 0.50 15.12 16 18 C -0.56 -31.19 9.39 25.60 0.24 -30.95 16 19 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 20 C 0.02 1.33 5.46 84.66 0.46 1.79 16 21 N -0.92 -51.70 13.29 21.45 0.28 -51.41 16 22 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 N -0.35 -16.70 12.59 -54.44 -0.69 -17.38 16 27 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.10 0.82 7.14 -2.39 -0.02 0.80 16 36 H 0.10 0.82 6.92 -2.39 -0.02 0.81 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.43 9.76 8.82 -92.71 -0.82 8.94 16 40 H 0.16 6.69 5.92 -2.91 -0.02 6.68 16 41 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.07 2.56 7.71 -2.39 -0.02 2.54 16 43 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 44 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.05 2.73 7.65 -2.39 -0.02 2.71 16 46 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -71.65 394.75 3.99 -67.66 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.15 Total: 21.55 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 6.30 Total: -1.73 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -3.29 Total: -106.87 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.04 Total: -19.28 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -1.16 Total: -6.32 kcal Total: -71.65 3.99 -67.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271122062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.011 kcal (2) G-P(sol) polarization free energy of solvation -71.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds