Wall clock time and date at job start Tue Mar 31 2020 14:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47254 * 2 1 4 4 H 1.08996 * 109.47249 * 180.63365 * 3 2 1 5 5 C 1.50699 * 109.46847 * 60.63087 * 3 2 1 6 6 H 1.08001 * 120.00232 * 239.99850 * 5 3 2 7 7 C 1.37877 * 119.99790 * 60.00358 * 5 3 2 8 8 N 1.31513 * 120.00392 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99944 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47344 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47359 * 119.99898 * 9 7 5 12 12 H 1.48501 * 109.47161 * 239.99990 * 9 7 5 13 13 N 1.46903 * 109.46884 * 300.63634 * 3 2 1 14 14 C 1.46902 * 110.99874 * 276.99704 * 13 3 2 15 15 C 1.50694 * 109.47122 * 175.01524 * 14 13 3 16 16 C 1.50693 * 120.00153 * 275.00346 * 15 14 13 17 17 C 1.32618 * 119.99780 * 95.00572 * 15 14 13 18 18 C 1.47732 * 119.99898 * 173.58859 * 17 15 14 19 19 C 1.39512 * 120.17289 * 320.49340 * 18 17 15 20 20 C 1.37950 * 119.91462 * 180.02562 * 19 18 17 21 21 C 1.38419 * 120.25994 * 359.97438 * 20 19 18 22 22 C 1.38195 * 120.34607 * 0.02562 * 21 20 19 23 23 C 1.38550 * 120.08415 * 0.02562 * 22 21 20 24 24 O 1.35837 * 120.13058 * 180.02562 * 23 22 21 25 25 C 1.42896 * 116.99730 * 359.95528 * 24 23 22 26 26 F 1.39902 * 109.47236 * 299.99828 * 25 24 23 27 27 F 1.39895 * 109.47253 * 60.00160 * 25 24 23 28 28 H 1.08994 * 109.46915 * 184.70524 * 1 2 3 29 29 H 1.08999 * 109.46997 * 304.70115 * 1 2 3 30 30 H 1.08997 * 109.47458 * 64.70139 * 1 2 3 31 31 H 1.08998 * 109.47077 * 240.00415 * 2 1 3 32 32 H 1.08992 * 109.47374 * 120.00085 * 2 1 3 33 33 H 0.96998 * 120.00530 * 179.97438 * 8 7 5 34 34 H 1.00900 * 110.99616 * 153.05063 * 13 3 2 35 35 H 1.09007 * 109.47018 * 55.01883 * 14 13 3 36 36 H 1.08999 * 109.47123 * 295.02117 * 14 13 3 37 37 H 1.09001 * 109.47128 * 267.98213 * 16 15 14 38 38 H 1.09000 * 109.47615 * 27.98252 * 16 15 14 39 39 H 1.08996 * 109.47536 * 147.98489 * 16 15 14 40 40 H 1.08000 * 119.99973 * 353.58236 * 17 15 14 41 41 H 1.08001 * 120.04093 * 0.05064 * 19 18 17 42 42 H 1.07996 * 119.87000 * 180.02562 * 20 19 18 43 43 H 1.07996 * 119.82610 * 179.74558 * 21 20 19 44 44 H 1.07996 * 119.96051 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.46621 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0114 5 6 1.5505 2.1484 1.2382 6 1 0.9286 3.0268 1.1489 7 6 1.8966 1.6727 2.4852 8 7 2.6535 0.6027 2.5941 9 14 1.2904 2.5480 4.0200 10 1 0.4622 3.7167 3.6289 11 1 0.4736 1.6120 4.8338 12 1 2.4541 3.0114 4.8178 13 7 1.5378 2.1394 -1.1917 14 6 2.3828 1.8597 -2.3603 15 6 1.7707 2.4890 -3.5851 16 6 0.7072 1.7532 -4.3587 17 6 2.1679 3.6904 -3.9821 18 6 1.6737 4.2475 -5.2580 19 6 1.5308 3.4232 -6.3745 20 6 1.0694 3.9492 -7.5634 21 6 0.7468 5.2922 -7.6534 22 6 0.8842 6.1185 -6.5542 23 6 1.3474 5.6056 -5.3534 24 8 1.4823 6.4168 -4.2722 25 6 1.1290 7.7907 -4.4440 26 9 1.9302 8.3571 -5.4412 27 9 -0.2159 7.8831 -4.8177 28 1 -0.3633 -1.0242 0.0843 29 1 -0.3633 0.5850 0.8449 30 1 -0.3634 0.4391 -0.9291 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.8974 0.2683 3.4713 34 1 1.4663 3.1323 -1.0266 35 1 2.4580 0.7818 -2.5047 36 1 3.3775 2.2746 -2.1972 37 1 1.1735 1.1706 -5.1533 38 1 0.1664 1.0855 -3.6881 39 1 0.0126 2.4712 -4.7946 40 1 2.8525 4.2616 -3.3726 41 1 1.7807 2.3747 -6.3079 42 1 0.9586 3.3104 -8.4271 43 1 0.3901 5.6975 -8.5887 44 1 0.6311 7.1655 -6.6315 45 1 1.2837 8.3254 -3.5068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290910442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:06 Heat of formation + Delta-G solvation = -111.040831 kcal Electronic energy + Delta-G solvation = -27590.043369 eV Core-core repulsion = 23436.308938 eV Total energy + Delta-G solvation = -4153.734431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.59059 -47.57619 -40.23068 -37.84824 -36.83976 -35.10571 -32.41448 -30.94879 -30.52502 -29.80428 -27.17352 -26.61637 -26.18166 -24.22218 -23.06617 -22.57031 -21.95815 -19.23704 -18.98419 -18.45190 -18.14720 -17.90852 -16.43864 -16.28078 -15.86444 -15.15294 -14.94458 -14.85587 -14.55302 -14.31405 -14.06808 -13.97466 -13.84954 -13.73753 -13.46937 -13.15461 -13.00872 -12.86337 -12.45391 -12.21113 -12.11089 -11.89114 -11.71552 -11.52019 -11.32446 -11.11713 -10.96096 -10.82320 -10.53831 -10.35377 -10.05850 -9.72454 -9.52810 -9.35606 -8.79122 -8.72877 -8.46977 -7.94279 -7.20569 -6.01502 -4.06646 0.96985 1.20087 2.38068 2.48612 3.22978 3.28469 3.36838 3.40750 3.64459 4.07590 4.40396 4.41071 4.58394 4.69025 4.88623 5.03867 5.18500 5.24446 5.29579 5.35727 5.40870 5.60956 5.78497 5.87390 5.93938 6.04154 6.15831 6.23496 6.25335 6.31438 6.37565 6.45617 6.55347 6.68680 6.82395 6.86751 6.97768 7.09481 7.24013 7.33151 7.49976 7.75390 7.80657 7.84610 8.29102 8.40563 8.68183 9.02900 9.58176 11.04475 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003025 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.416916 B = 9252.653464 C =10684.231860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.215 3.785 4 H -0.001 1.001 5 C -0.509 4.509 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.091 3.909 15 C -0.072 4.072 16 C -0.119 4.119 17 C -0.146 4.146 18 C -0.046 4.046 19 C -0.085 4.085 20 C -0.144 4.144 21 C -0.093 4.093 22 C -0.191 4.191 23 C 0.107 3.893 24 O -0.310 6.310 25 C 0.410 3.590 26 F -0.202 7.202 27 F -0.200 7.200 28 H 0.013 0.987 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.009 0.991 32 H 0.087 0.913 33 H 0.260 0.740 34 H 0.331 0.669 35 H 0.073 0.927 36 H 0.026 0.974 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.119 0.881 41 H 0.138 0.862 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.130 0.870 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 10.208 -19.156 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.016 0.984 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.039 4.039 15 C -0.072 4.072 16 C -0.175 4.175 17 C -0.165 4.165 18 C -0.047 4.047 19 C -0.103 4.103 20 C -0.162 4.162 21 C -0.111 4.111 22 C -0.210 4.210 23 C 0.064 3.936 24 O -0.227 6.227 25 C 0.320 3.680 26 F -0.184 7.184 27 F -0.181 7.181 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.149 0.851 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.602 9.555 -18.993 21.420 hybrid contribution 0.396 1.268 0.881 1.594 sum -2.206 10.823 -18.112 21.214 Atomic orbital electron populations 1.21441 0.97501 0.97364 1.01330 1.21439 0.95025 0.98255 0.99436 1.19150 0.92787 0.91474 0.85817 0.98372 1.21201 1.31403 1.11929 0.90243 0.92234 1.24886 0.95079 0.95022 0.98931 1.69890 1.36646 1.22701 1.23594 0.86527 0.78523 0.79707 0.83174 1.19766 1.21020 1.21178 1.60700 1.51298 1.14406 1.04509 1.20962 0.93670 0.99861 0.89367 1.22220 0.94933 0.94200 0.95880 1.21023 0.96998 1.00195 0.99299 1.21206 1.04010 0.96179 0.95121 1.18421 1.01571 0.89320 0.95363 1.21389 0.97710 0.99931 0.91251 1.21060 1.01777 0.95387 0.98007 1.20925 0.98801 0.93567 0.97775 1.21428 1.05433 1.01136 0.92988 1.18972 0.98749 0.90211 0.85656 1.86674 1.81893 1.18451 1.35667 1.23423 0.72480 0.81693 0.90440 1.93086 1.73979 1.85107 1.66183 1.93091 1.36027 1.95779 1.93250 0.96834 0.92526 0.93979 0.97229 0.89501 0.93037 0.85148 0.90878 0.95641 0.91839 0.90871 0.91850 0.86289 0.84424 0.85682 0.85764 0.85189 0.80181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.52 37.16 0.35 -2.30 16 2 C -0.10 -2.47 5.55 -26.73 -0.15 -2.62 16 3 C 0.22 5.28 2.29 -68.86 -0.16 5.12 16 4 H 0.00 -0.04 7.89 -51.93 -0.41 -0.45 16 5 C -0.51 -13.56 7.28 -34.44 -0.25 -13.81 16 6 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -25.02 11.31 55.43 0.63 -24.39 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.68 -14.06 5.55 -109.22 -0.61 -14.67 16 14 C 0.09 1.60 5.62 -4.98 -0.03 1.58 16 15 C -0.07 -1.08 5.55 -101.26 -0.56 -1.64 16 16 C -0.12 -1.57 8.28 36.00 0.30 -1.27 16 17 C -0.15 -2.12 8.91 -37.60 -0.34 -2.46 16 18 C -0.05 -0.62 5.06 -104.88 -0.53 -1.15 16 19 C -0.09 -0.97 7.78 -39.21 -0.31 -1.27 16 20 C -0.14 -1.43 10.03 -39.62 -0.40 -1.83 16 21 C -0.09 -0.94 10.03 -39.53 -0.40 -1.34 16 22 C -0.19 -2.25 8.25 -39.48 -0.33 -2.57 16 23 C 0.11 1.42 6.49 -38.81 -0.25 1.17 16 24 O -0.31 -3.88 9.88 -19.23 -0.19 -4.07 16 25 C 0.41 3.71 5.98 101.05 0.60 4.31 16 26 F -0.20 -2.00 15.59 2.25 0.04 -1.97 16 27 F -0.20 -2.08 15.58 2.25 0.04 -2.04 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 1.36 7.08 -51.93 -0.37 1.00 16 30 H 0.04 0.89 7.74 -51.93 -0.40 0.49 16 31 H 0.01 0.20 7.27 -51.93 -0.38 -0.17 16 32 H 0.09 2.33 6.05 -51.93 -0.31 2.01 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.33 6.92 8.32 -39.29 -0.33 6.59 16 35 H 0.07 1.31 7.21 -51.93 -0.37 0.94 16 36 H 0.03 0.46 8.03 -51.93 -0.42 0.04 16 37 H 0.06 0.69 6.67 -51.93 -0.35 0.35 16 38 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 39 H 0.06 0.83 6.53 -51.93 -0.34 0.49 16 40 H 0.12 1.78 8.05 -52.49 -0.42 1.36 16 41 H 0.14 1.39 5.73 -52.49 -0.30 1.08 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.13 1.43 5.10 -52.49 -0.27 1.16 16 45 H 0.18 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -29.58 368.84 -8.40 -37.98 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.31 Total: 6.04 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -2.53 Total: -18.48 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.02 Total: -39.06 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.19 Total: -4.07 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.07 Total: -4.01 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.58 -8.40 -37.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290910442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.061 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds