Wall clock time and date at job start Tue Mar 31 2020 14:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47254 * 2 1 4 4 H 1.08996 * 109.47249 * 180.63365 * 3 2 1 5 5 C 1.50699 * 109.46847 * 60.63087 * 3 2 1 6 6 H 1.08001 * 120.00232 * 239.99850 * 5 3 2 7 7 C 1.37877 * 119.99790 * 60.00358 * 5 3 2 8 8 N 1.31513 * 120.00392 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99944 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47344 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47359 * 119.99898 * 9 7 5 12 12 H 1.48501 * 109.47161 * 239.99990 * 9 7 5 13 13 N 1.46903 * 109.46884 * 300.63634 * 3 2 1 14 14 C 1.46902 * 110.99874 * 276.99704 * 13 3 2 15 15 C 1.50694 * 109.47122 * 175.01524 * 14 13 3 16 16 C 1.50693 * 120.00153 * 275.00346 * 15 14 13 17 17 C 1.32618 * 119.99780 * 95.00572 * 15 14 13 18 18 C 1.47732 * 119.99898 * 173.58859 * 17 15 14 19 19 C 1.39512 * 120.17289 * 320.49340 * 18 17 15 20 20 C 1.37950 * 119.91462 * 180.02562 * 19 18 17 21 21 C 1.38419 * 120.25994 * 359.97438 * 20 19 18 22 22 C 1.38195 * 120.34607 * 0.02562 * 21 20 19 23 23 C 1.38550 * 120.08415 * 0.02562 * 22 21 20 24 24 O 1.35837 * 120.13058 * 180.02562 * 23 22 21 25 25 C 1.42896 * 116.99730 * 359.95528 * 24 23 22 26 26 F 1.39902 * 109.47236 * 299.99828 * 25 24 23 27 27 F 1.39895 * 109.47253 * 60.00160 * 25 24 23 28 28 H 1.08994 * 109.46915 * 184.70524 * 1 2 3 29 29 H 1.08999 * 109.46997 * 304.70115 * 1 2 3 30 30 H 1.08997 * 109.47458 * 64.70139 * 1 2 3 31 31 H 1.08998 * 109.47077 * 240.00415 * 2 1 3 32 32 H 1.08992 * 109.47374 * 120.00085 * 2 1 3 33 33 H 0.96998 * 120.00530 * 179.97438 * 8 7 5 34 34 H 1.00900 * 110.99616 * 153.05063 * 13 3 2 35 35 H 1.09007 * 109.47018 * 55.01883 * 14 13 3 36 36 H 1.08999 * 109.47123 * 295.02117 * 14 13 3 37 37 H 1.09001 * 109.47128 * 267.98213 * 16 15 14 38 38 H 1.09000 * 109.47615 * 27.98252 * 16 15 14 39 39 H 1.08996 * 109.47536 * 147.98489 * 16 15 14 40 40 H 1.08000 * 119.99973 * 353.58236 * 17 15 14 41 41 H 1.08001 * 120.04093 * 0.05064 * 19 18 17 42 42 H 1.07996 * 119.87000 * 180.02562 * 20 19 18 43 43 H 1.07996 * 119.82610 * 179.74558 * 21 20 19 44 44 H 1.07996 * 119.96051 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.46621 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0114 5 6 1.5505 2.1484 1.2382 6 1 0.9286 3.0268 1.1489 7 6 1.8966 1.6727 2.4852 8 7 2.6535 0.6027 2.5941 9 14 1.2904 2.5480 4.0200 10 1 0.4622 3.7167 3.6289 11 1 0.4736 1.6120 4.8338 12 1 2.4541 3.0114 4.8178 13 7 1.5378 2.1394 -1.1917 14 6 2.3828 1.8597 -2.3603 15 6 1.7707 2.4890 -3.5851 16 6 0.7072 1.7532 -4.3587 17 6 2.1679 3.6904 -3.9821 18 6 1.6737 4.2475 -5.2580 19 6 1.5308 3.4232 -6.3745 20 6 1.0694 3.9492 -7.5634 21 6 0.7468 5.2922 -7.6534 22 6 0.8842 6.1185 -6.5542 23 6 1.3474 5.6056 -5.3534 24 8 1.4823 6.4168 -4.2722 25 6 1.1290 7.7907 -4.4440 26 9 1.9302 8.3571 -5.4412 27 9 -0.2159 7.8831 -4.8177 28 1 -0.3633 -1.0242 0.0843 29 1 -0.3633 0.5850 0.8449 30 1 -0.3634 0.4391 -0.9291 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.8974 0.2683 3.4713 34 1 1.4663 3.1323 -1.0266 35 1 2.4580 0.7818 -2.5047 36 1 3.3775 2.2746 -2.1972 37 1 1.1735 1.1706 -5.1533 38 1 0.1664 1.0855 -3.6881 39 1 0.0126 2.4712 -4.7946 40 1 2.8525 4.2616 -3.3726 41 1 1.7807 2.3747 -6.3079 42 1 0.9586 3.3104 -8.4271 43 1 0.3901 5.6975 -8.5887 44 1 0.6311 7.1655 -6.6315 45 1 1.2837 8.3254 -3.5068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290910442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:05 Heat of formation + Delta-G solvation = -126.945891 kcal Electronic energy + Delta-G solvation = -27590.733064 eV Core-core repulsion = 23436.308938 eV Total energy + Delta-G solvation = -4154.424126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.33853 -48.33123 -41.10860 -38.89387 -38.24383 -36.54475 -34.17743 -32.57337 -31.37664 -31.10422 -28.57201 -28.01110 -27.03988 -25.80815 -24.90425 -23.44908 -22.92220 -20.93418 -20.08784 -19.40190 -18.91664 -18.84996 -18.24970 -17.19269 -16.95191 -16.75348 -16.14281 -15.96022 -15.74444 -15.43882 -15.25153 -15.07842 -14.99182 -14.75805 -14.70598 -14.59755 -14.06006 -13.92790 -13.84800 -13.59265 -13.36793 -13.02972 -12.95382 -12.82041 -12.63270 -12.61175 -12.47712 -12.40457 -12.15489 -11.93660 -11.74473 -11.46555 -11.27433 -10.78749 -10.55912 -10.50185 -9.63139 -9.05579 -8.88764 -8.08997 -6.20975 0.04335 0.34964 1.38696 1.40849 1.43740 1.54308 1.64701 2.43350 2.52064 2.77370 3.19709 3.48889 3.60677 3.68472 3.84955 3.88615 4.01493 4.11159 4.18234 4.31409 4.43869 4.55126 4.61768 4.70990 4.77797 4.79959 4.82885 4.94742 4.97358 5.05835 5.18782 5.23399 5.32418 5.35198 5.41214 5.50476 5.57327 5.62388 5.71893 5.72355 5.83222 5.90432 5.96199 6.10952 6.30716 6.50906 6.80594 7.02723 7.47752 8.96185 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003025 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.416916 B = 9252.653464 C =10684.231860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C 0.221 3.779 4 H -0.038 1.038 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.672 5.672 14 C 0.096 3.904 15 C -0.084 4.084 16 C -0.109 4.109 17 C -0.133 4.133 18 C -0.074 4.074 19 C -0.085 4.085 20 C -0.141 4.141 21 C -0.089 4.089 22 C -0.204 4.204 23 C 0.090 3.910 24 O -0.330 6.330 25 C 0.406 3.594 26 F -0.208 7.208 27 F -0.208 7.208 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.022 0.978 32 H 0.058 0.942 33 H 0.260 0.740 34 H 0.329 0.671 35 H 0.070 0.930 36 H 0.016 0.984 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.150 0.850 42 H 0.157 0.843 43 H 0.153 0.847 44 H 0.133 0.867 45 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.415 10.790 -20.924 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.113 3.887 4 H -0.021 1.021 5 C -0.559 4.559 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.302 5.302 14 C -0.033 4.033 15 C -0.085 4.085 16 C -0.166 4.166 17 C -0.152 4.152 18 C -0.075 4.075 19 C -0.102 4.102 20 C -0.159 4.159 21 C -0.106 4.106 22 C -0.222 4.222 23 C 0.046 3.954 24 O -0.248 6.248 25 C 0.316 3.684 26 F -0.190 7.190 27 F -0.190 7.190 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.146 0.854 35 H 0.089 0.911 36 H 0.034 0.966 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.168 0.832 42 H 0.175 0.825 43 H 0.170 0.830 44 H 0.151 0.849 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.745 10.148 -20.780 23.427 hybrid contribution 0.793 1.158 1.316 1.924 sum -2.952 11.307 -19.464 22.702 Atomic orbital electron populations 1.21297 0.95928 0.98300 1.00852 1.21312 0.96297 0.97532 0.98586 1.18946 0.90548 0.92291 0.86933 1.02058 1.21445 1.31211 1.11909 0.91325 0.92618 1.25619 0.95249 0.95670 1.01738 1.70020 1.37580 1.23863 1.24183 0.85566 0.78032 0.78750 0.79647 1.19144 1.20745 1.20868 1.60643 1.51618 1.13896 1.04016 1.20921 0.93090 0.99938 0.89379 1.22022 0.96321 0.94883 0.95272 1.20966 0.96265 0.99930 0.99397 1.21193 1.02922 0.95576 0.95519 1.18489 1.03596 0.90003 0.95395 1.21609 0.97129 1.00343 0.91152 1.21428 1.00400 0.95681 0.98387 1.21347 0.97351 0.93660 0.98278 1.21600 1.05819 1.01689 0.93116 1.19224 0.99285 0.90452 0.86391 1.86645 1.82156 1.19949 1.36053 1.24146 0.71780 0.80665 0.91777 1.93066 1.74118 1.84994 1.66776 1.93067 1.36789 1.95710 1.93461 0.94867 0.94679 0.92905 0.95968 0.92388 0.93030 0.85409 0.91132 0.96566 0.89336 0.92201 0.91576 0.87686 0.83205 0.82524 0.82957 0.84893 0.75870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.52 71.98 0.69 -4.01 16 2 C -0.10 -4.79 5.55 30.60 0.17 -4.62 16 3 C 0.22 11.15 2.29 44.17 0.10 11.25 16 4 H -0.04 -2.16 7.89 -2.39 -0.02 -2.18 16 5 C -0.52 -28.20 7.28 25.60 0.19 -28.01 16 6 H 0.06 3.00 7.65 -2.91 -0.02 2.98 16 7 C 0.02 0.89 5.30 84.65 0.45 1.34 16 8 N -0.92 -52.61 11.31 21.45 0.24 -52.37 16 9 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.67 -28.31 5.55 -499.45 -2.77 -31.09 16 14 C 0.10 3.44 5.62 85.55 0.48 3.92 16 15 C -0.08 -2.51 5.55 -17.61 -0.10 -2.60 16 16 C -0.11 -2.72 8.28 71.23 0.59 -2.13 16 17 C -0.13 -3.87 8.91 23.62 0.21 -3.66 16 18 C -0.07 -1.93 5.06 -20.03 -0.10 -2.03 16 19 C -0.08 -1.74 7.78 22.51 0.18 -1.56 16 20 C -0.14 -2.34 10.03 22.24 0.22 -2.12 16 21 C -0.09 -1.55 10.03 22.30 0.22 -1.33 16 22 C -0.20 -4.49 8.25 22.33 0.18 -4.31 16 23 C 0.09 2.32 6.49 22.77 0.15 2.47 16 24 O -0.33 -8.20 9.88 -91.72 -0.91 -9.11 16 25 C 0.41 6.96 5.98 113.37 0.68 7.63 16 26 F -0.21 -3.95 15.59 44.97 0.70 -3.25 16 27 F -0.21 -4.16 15.58 44.97 0.70 -3.46 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.03 1.67 7.08 -2.39 -0.02 1.65 16 30 H 0.05 2.18 7.74 -2.39 -0.02 2.16 16 31 H 0.02 0.99 7.27 -2.39 -0.02 0.97 16 32 H 0.06 3.17 6.05 -2.39 -0.01 3.16 16 33 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.33 14.05 8.32 -89.69 -0.75 13.30 16 35 H 0.07 2.55 7.21 -2.38 -0.02 2.53 16 36 H 0.02 0.61 8.03 -2.39 -0.02 0.59 16 37 H 0.09 1.71 6.67 -2.39 -0.02 1.70 16 38 H 0.06 1.64 8.11 -2.39 -0.02 1.62 16 39 H 0.07 1.61 6.53 -2.39 -0.02 1.59 16 40 H 0.11 3.27 8.05 -2.91 -0.02 3.24 16 41 H 0.15 2.60 5.73 -2.91 -0.02 2.59 16 42 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.13 2.77 5.10 -2.91 -0.01 2.75 16 45 H 0.23 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -64.78 368.84 4.56 -60.21 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.27 Total: 23.30 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 4.31 Total: -29.76 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -2.53 Total: -83.46 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.91 Total: -9.11 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 1.40 Total: -6.71 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -64.78 4.56 -60.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290910442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.732 kcal (2) G-P(sol) polarization free energy of solvation -64.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds