Wall clock time and date at job start Tue Mar 31 2020 14:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47350 * 2 1 4 4 H 1.08996 * 109.47390 * 185.70690 * 3 2 1 5 5 C 1.50702 * 109.47293 * 305.71094 * 3 2 1 6 6 H 1.07987 * 120.00342 * 119.99767 * 5 3 2 7 7 C 1.37886 * 119.99700 * 299.99849 * 5 3 2 8 8 N 1.31513 * 119.99870 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99904 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47093 * 60.00059 * 9 7 5 11 11 H 1.48495 * 109.47169 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46837 * 299.99875 * 9 7 5 13 13 N 1.46902 * 109.47139 * 65.70921 * 3 2 1 14 14 C 1.46896 * 111.00044 * 87.30093 * 13 3 2 15 15 C 1.50699 * 109.47026 * 174.87554 * 14 13 3 16 16 C 1.50700 * 119.99585 * 274.99813 * 15 14 13 17 17 C 1.32608 * 120.00163 * 94.99908 * 15 14 13 18 18 C 1.47737 * 119.99762 * 186.24524 * 17 15 14 19 19 C 1.39502 * 120.17082 * 38.57727 * 18 17 15 20 20 C 1.37954 * 119.91116 * 179.97438 * 19 18 17 21 21 C 1.38411 * 120.26254 * 0.02562 * 20 19 18 22 22 C 1.38198 * 120.34440 * 359.97438 * 21 20 19 23 23 C 1.38547 * 120.08177 * 359.70565 * 22 21 20 24 24 O 1.35838 * 120.12693 * 180.27687 * 23 22 21 25 25 C 1.42904 * 117.00159 * 0.29264 * 24 23 22 26 26 F 1.39897 * 109.46874 * 300.00385 * 25 24 23 27 27 F 1.39896 * 109.46765 * 60.00239 * 25 24 23 28 28 H 1.08998 * 109.47185 * 183.54581 * 1 2 3 29 29 H 1.09010 * 109.46653 * 303.54215 * 1 2 3 30 30 H 1.08997 * 109.47409 * 63.53973 * 1 2 3 31 31 H 1.09000 * 109.46970 * 240.00313 * 2 1 3 32 32 H 1.08995 * 109.47616 * 120.00279 * 2 1 3 33 33 H 0.97002 * 120.00096 * 180.02562 * 8 7 5 34 34 H 1.00907 * 110.99347 * 323.34834 * 13 3 2 35 35 H 1.09006 * 109.46903 * 294.87323 * 14 13 3 36 36 H 1.08995 * 109.47075 * 54.87504 * 14 13 3 37 37 H 1.09000 * 109.47176 * 91.37621 * 16 15 14 38 38 H 1.09004 * 109.47101 * 211.37018 * 16 15 14 39 39 H 1.08997 * 109.47567 * 331.37084 * 16 15 14 40 40 H 1.08002 * 120.00527 * 6.25410 * 17 15 14 41 41 H 1.08004 * 120.04863 * 359.95256 * 19 18 17 42 42 H 1.08009 * 119.86913 * 179.97438 * 20 19 18 43 43 H 1.08007 * 119.82990 * 179.97438 * 21 20 19 44 44 H 1.08002 * 119.95795 * 179.97438 * 22 21 20 45 45 H 1.08993 * 109.46797 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1252 1.4442 -0.1022 5 6 1.4256 2.1926 -1.1537 6 1 0.8182 3.0659 -0.9678 7 6 1.6391 1.7638 -2.4467 8 7 2.3792 0.7006 -2.6731 9 14 0.8770 2.6931 -3.8766 10 1 1.3715 4.0934 -3.8768 11 1 1.2545 2.0342 -5.1527 12 1 -0.6015 2.6902 -3.7371 13 7 1.6661 2.0941 1.2624 14 6 2.6806 1.8569 2.2979 15 6 2.3279 2.6409 3.5356 16 6 2.7475 4.0831 3.6590 17 6 1.6484 2.0619 4.5161 18 6 1.1830 2.8639 5.6662 19 6 0.7048 4.1596 5.4697 20 6 0.2710 4.9036 6.5474 21 6 0.3088 4.3699 7.8240 22 6 0.7804 3.0875 8.0309 23 6 1.2134 2.3253 6.9580 24 8 1.6719 1.0626 7.1596 25 6 1.6742 0.5803 8.5048 26 9 2.4832 1.4046 9.2943 27 9 0.3682 0.5905 9.0061 28 1 -0.3633 -1.0257 0.0636 29 1 -0.3633 0.5679 0.8566 30 1 -0.3634 0.4579 -0.9200 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.5297 0.3991 -3.5827 34 1 0.7556 1.7881 1.5713 35 1 2.7132 0.7941 2.5380 36 1 3.6559 2.1765 1.9310 37 1 1.9563 4.7260 3.2734 38 1 2.9297 4.3201 4.7072 39 1 3.6601 4.2464 3.0857 40 1 1.4352 1.0039 4.4741 41 1 0.6744 4.5799 4.4753 42 1 -0.0987 5.9069 6.3946 43 1 -0.0322 4.9588 8.6628 44 1 0.8075 2.6774 9.0296 45 1 2.0637 -0.4374 8.5251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290910445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:08 Heat of formation + Delta-G solvation = -108.663983 kcal Electronic energy + Delta-G solvation = -27486.417917 eV Core-core repulsion = 23332.786554 eV Total energy + Delta-G solvation = -4153.631363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.65184 -47.63942 -40.24910 -37.88863 -36.95356 -35.21899 -32.38907 -31.00395 -30.52560 -29.65218 -27.21230 -26.58480 -26.21135 -24.29193 -23.15303 -22.59136 -21.94409 -19.33702 -19.19232 -18.50796 -18.20822 -17.93989 -16.40787 -16.11797 -15.85951 -15.17213 -14.95241 -14.76884 -14.75636 -14.33531 -14.30203 -14.01089 -13.84594 -13.60867 -13.52844 -13.17719 -12.99184 -12.84100 -12.43963 -12.33641 -12.12005 -11.88948 -11.78341 -11.56781 -11.27914 -11.19360 -10.98743 -10.84118 -10.54218 -10.48471 -9.95801 -9.77936 -9.55359 -9.51582 -8.98200 -8.75469 -8.32471 -7.95891 -7.19263 -5.95610 -3.97091 0.96340 1.20932 2.32367 2.49371 3.16681 3.35376 3.39691 3.42991 3.65887 3.99953 4.33889 4.46180 4.57400 4.69000 4.92765 5.03715 5.20312 5.23476 5.34305 5.35943 5.46964 5.55370 5.78030 5.94398 5.95864 6.04513 6.17404 6.21378 6.22790 6.29757 6.35859 6.37881 6.40545 6.47081 6.58814 6.82009 6.91925 6.96889 7.07584 7.28673 7.30408 7.51518 7.71646 7.90901 8.29908 8.56670 8.63311 9.08334 9.66422 11.11371 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.002595 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.850505 B =10788.794937 C =11444.493988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.091 3.909 15 C -0.073 4.073 16 C -0.117 4.117 17 C -0.146 4.146 18 C -0.047 4.047 19 C -0.082 4.082 20 C -0.143 4.143 21 C -0.092 4.092 22 C -0.193 4.193 23 C 0.105 3.895 24 O -0.312 6.312 25 C 0.410 3.590 26 F -0.201 7.201 27 F -0.200 7.200 28 H 0.021 0.979 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.010 0.990 33 H 0.259 0.741 34 H 0.327 0.673 35 H 0.025 0.975 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.118 0.882 41 H 0.143 0.857 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.130 0.870 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 2.117 23.153 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.308 5.308 14 C -0.038 4.038 15 C -0.073 4.073 16 C -0.174 4.174 17 C -0.166 4.166 18 C -0.048 4.048 19 C -0.100 4.100 20 C -0.161 4.161 21 C -0.110 4.110 22 C -0.211 4.211 23 C 0.062 3.938 24 O -0.229 6.229 25 C 0.320 3.680 26 F -0.182 7.182 27 F -0.182 7.182 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.146 0.854 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.160 0.840 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.099 2.512 22.690 22.855 hybrid contribution -0.668 -0.559 -0.202 0.894 sum -1.767 1.953 22.488 22.641 Atomic orbital electron populations 1.21553 0.97638 0.97805 1.01405 1.22104 0.95065 1.01099 1.00178 1.19225 0.95990 0.88635 0.85330 0.95001 1.21036 1.30471 1.11493 0.89666 0.92066 1.24913 0.95593 0.95183 0.98689 1.69873 1.39204 1.24134 1.20491 0.86633 0.79614 0.80016 0.81559 1.20349 1.21557 1.20394 1.60842 1.03406 1.63257 1.03321 1.20938 0.97548 0.95459 0.89864 1.22227 0.95071 0.96105 0.93924 1.21026 1.01748 0.93427 1.01152 1.21185 1.02906 0.98838 0.93631 1.18411 1.01823 0.94328 0.90206 1.21507 0.96016 0.92368 1.00064 1.21098 1.02019 1.00528 0.92492 1.20937 0.98287 0.94416 0.97372 1.21405 1.05074 0.96676 0.97951 1.18968 0.97481 0.83115 0.94261 1.86645 1.79948 1.29607 1.26742 1.23389 0.74946 0.94265 0.75437 1.93089 1.73390 1.76262 1.75495 1.93092 1.40149 1.97231 1.87753 0.95975 0.95028 0.91650 0.88955 0.97142 0.93091 0.85419 0.95735 0.90984 0.90718 0.92134 0.91775 0.86421 0.83987 0.85578 0.85759 0.85249 0.80323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.38 37.16 0.35 -2.36 16 2 C -0.14 -3.37 5.51 -26.73 -0.15 -3.52 16 3 C 0.22 5.26 2.34 -68.86 -0.16 5.10 16 4 H 0.03 0.86 7.68 -51.93 -0.40 0.46 16 5 C -0.49 -13.08 7.40 -34.44 -0.25 -13.33 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.54 5.23 -17.82 -0.09 1.44 16 8 N -0.90 -25.19 11.38 55.43 0.63 -24.56 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.68 -14.04 6.20 -109.22 -0.68 -14.72 16 14 C 0.09 1.62 5.68 -4.98 -0.03 1.59 16 15 C -0.07 -1.10 5.55 -101.25 -0.56 -1.66 16 16 C -0.12 -1.57 8.26 36.01 0.30 -1.27 16 17 C -0.15 -2.13 8.94 -37.60 -0.34 -2.46 16 18 C -0.05 -0.63 5.09 -104.89 -0.53 -1.17 16 19 C -0.08 -0.98 7.74 -39.21 -0.30 -1.29 16 20 C -0.14 -1.49 10.03 -39.62 -0.40 -1.89 16 21 C -0.09 -0.95 10.03 -39.53 -0.40 -1.34 16 22 C -0.19 -2.22 8.25 -39.48 -0.33 -2.55 16 23 C 0.10 1.35 6.49 -38.81 -0.25 1.10 16 24 O -0.31 -3.63 9.88 -19.23 -0.19 -3.82 16 25 C 0.41 3.33 5.98 101.05 0.60 3.93 16 26 F -0.20 -1.88 15.57 2.25 0.04 -1.84 16 27 F -0.20 -1.89 15.60 2.25 0.04 -1.86 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.62 6.34 -51.92 -0.33 0.29 16 30 H 0.06 1.53 7.14 -51.93 -0.37 1.16 16 31 H 0.09 2.41 6.25 -51.93 -0.32 2.09 16 32 H 0.01 0.22 7.59 -51.93 -0.39 -0.18 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.33 6.61 6.57 -39.29 -0.26 6.35 16 35 H 0.02 0.44 7.47 -51.93 -0.39 0.05 16 36 H 0.07 1.32 7.87 -51.93 -0.41 0.91 16 37 H 0.07 0.97 6.69 -51.93 -0.35 0.63 16 38 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 39 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 40 H 0.12 1.74 7.99 -52.49 -0.42 1.32 16 41 H 0.14 1.65 5.64 -52.48 -0.30 1.35 16 42 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 43 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 44 H 0.13 1.37 5.10 -52.49 -0.27 1.11 16 45 H 0.18 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -29.49 366.76 -8.39 -37.88 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.19 Total: 6.82 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -2.54 Total: -19.67 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: -0.05 Total: -39.28 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -0.19 Total: -3.82 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.07 Total: -3.70 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.49 -8.39 -37.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290910445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.784 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds