Wall clock time and date at job start Tue Mar 31 2020 14:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.59091 * 2 1 4 4 C 1.53166 * 109.53399 * 239.81571 * 2 1 3 5 5 C 1.53225 * 109.54974 * 170.86101 * 4 2 1 6 6 N 1.46691 * 108.84263 * 50.62002 * 5 4 2 7 7 N 1.39625 * 127.22692 * 162.60664 * 6 5 4 8 8 C 1.30603 * 108.87721 * 180.02562 * 7 6 5 9 9 C 1.41485 * 108.07465 * 0.02562 * 8 7 6 10 10 C 1.47395 * 126.49018 * 179.97438 * 9 8 7 11 11 O 1.21609 * 119.99631 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99655 * 0.02562 * 10 9 8 13 13 C 1.39044 * 119.99540 * 174.15613 * 12 10 9 14 14 C 1.38678 * 120.28327 * 335.22648 * 13 12 10 15 15 C 1.38211 * 120.02626 * 179.72455 * 14 13 12 16 16 C 1.38883 * 120.61768 * 0.55511 * 15 14 13 17 17 C 1.36461 * 120.58318 * 359.71996 * 16 15 14 18 18 C 1.40739 * 119.94471 * 0.02562 * 17 16 15 19 19 C 1.41063 * 120.30113 * 180.02562 * 18 17 16 20 20 H 1.07992 * 120.00181 * 154.31631 * 19 18 17 21 21 C 1.39954 * 119.99579 * 334.31572 * 19 18 17 22 22 N 1.30851 * 120.00576 * 354.31335 * 21 19 18 23 23 Si 1.86804 * 119.99832 * 174.31403 * 21 19 18 24 24 H 1.48501 * 109.46938 * 59.99756 * 23 21 19 25 25 H 1.48494 * 109.47342 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47005 * 300.00059 * 23 21 19 27 27 C 1.34607 * 124.42855 * 342.59974 * 6 5 4 28 28 C 1.50802 * 124.57924 * 359.94116 * 27 6 5 29 29 H 1.08996 * 109.47553 * 299.81799 * 1 2 3 30 30 H 1.08999 * 109.47154 * 59.82256 * 1 2 3 31 31 H 1.09006 * 109.47216 * 179.81170 * 1 2 3 32 32 H 1.09001 * 109.45607 * 290.89732 * 4 2 1 33 33 H 1.08996 * 109.45522 * 50.86299 * 4 2 1 34 34 H 1.08999 * 109.59962 * 290.79569 * 5 4 2 35 35 H 1.09001 * 109.55640 * 170.40875 * 5 4 2 36 36 H 1.08003 * 125.96224 * 179.73566 * 8 7 6 37 37 H 0.96997 * 120.00580 * 354.15054 * 12 10 9 38 38 H 1.07997 * 119.98708 * 359.97438 * 14 13 12 39 39 H 1.08002 * 119.69082 * 180.25702 * 15 14 13 40 40 H 1.07997 * 119.70417 * 179.74969 * 16 15 14 41 41 H 1.07991 * 120.02395 * 180.02562 * 17 16 15 42 42 H 0.97000 * 120.00773 * 179.97438 * 22 21 19 43 43 H 1.09005 * 109.71767 * 103.95346 * 28 27 6 44 44 H 1.08997 * 109.71752 * 224.60148 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0420 -0.7258 -1.2478 5 6 3.5570 -0.5308 -1.3687 6 7 4.1828 -0.8750 -0.0874 7 7 5.5296 -1.1607 0.1451 8 6 5.6935 -1.4198 1.4147 9 6 4.4351 -1.3077 2.0516 10 6 4.1557 -1.5167 3.4837 11 8 3.0229 -1.3892 3.9071 12 7 5.1559 -1.8491 4.3237 13 6 4.9178 -1.9272 5.6914 14 6 3.8792 -1.2075 6.2627 15 6 3.6438 -1.2936 7.6219 16 6 4.4467 -2.0882 8.4299 17 6 5.4789 -2.8026 7.8950 18 6 5.7370 -2.7369 6.5131 19 6 6.8018 -3.4727 5.9521 20 1 6.7674 -3.7656 4.9132 21 6 7.9027 -3.8232 6.7419 22 7 7.9978 -3.3751 7.9677 23 14 9.2365 -4.9307 6.0463 24 1 9.8416 -4.2871 4.8526 25 1 10.2842 -5.1503 7.0755 26 1 8.6436 -6.2357 5.6579 27 6 3.5223 -0.9660 1.0819 28 6 2.0429 -0.7270 1.2502 29 1 -0.3634 0.5110 0.8916 30 1 -0.3633 0.5166 -0.8884 31 1 -0.3634 -1.0277 -0.0034 32 1 1.8179 -1.7894 -1.1668 33 1 1.5521 -0.3178 -2.1318 34 1 3.7735 0.5091 -1.6133 35 1 3.9472 -1.1809 -2.1519 36 1 6.6260 -1.6792 1.8938 37 1 6.0417 -2.0338 3.9743 38 1 3.2516 -0.5826 5.6447 39 1 2.8309 -0.7339 8.0605 40 1 4.2520 -2.1414 9.4909 41 1 6.0973 -3.4179 8.5316 42 1 8.7606 -3.6183 8.5152 43 1 1.5263 -1.6807 1.3590 44 1 1.8679 -0.1107 2.1320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335458080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:49 Heat of formation + Delta-G solvation = 49.175649 kcal Electronic energy + Delta-G solvation = -27039.549422 eV Core-core repulsion = 23343.451686 eV Total energy + Delta-G solvation = -3696.097736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.64931 -39.19349 -37.37730 -36.94856 -33.69343 -33.61372 -33.08146 -31.12660 -29.63558 -29.37097 -28.02950 -26.74170 -25.20781 -24.14060 -22.58309 -21.73822 -21.17394 -20.42161 -19.27285 -18.95265 -17.46965 -17.10473 -16.22056 -15.92547 -15.29885 -15.09063 -15.06237 -14.68701 -14.32387 -14.22936 -13.90112 -13.75925 -13.50249 -13.11147 -12.87705 -12.57718 -12.54275 -12.38236 -12.17349 -11.91229 -11.64808 -11.40194 -11.26139 -11.15285 -11.09700 -11.04878 -10.91250 -10.63411 -10.44437 -10.00094 -9.66200 -9.32386 -9.27814 -9.22235 -8.72035 -8.48195 -7.30299 -6.86615 -6.55242 -4.35864 1.65543 2.29822 2.30378 2.80895 3.05672 3.07786 3.09793 3.26708 3.91539 3.99045 4.06811 4.21465 4.27105 4.35660 4.44395 4.69959 4.84891 4.86692 5.02359 5.11463 5.26403 5.28223 5.41601 5.44286 5.51254 5.52774 5.66049 5.74748 5.82992 5.89669 6.00717 6.10543 6.41343 6.51655 6.62537 6.68317 6.86976 6.99041 7.12956 7.27384 7.38377 7.63831 7.71038 7.82879 8.09215 8.18823 8.20399 8.53671 8.64996 8.89942 8.92452 9.15507 10.21506 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.003508 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.235539 B = 7980.291400 C = 9594.680738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 H 0.077 0.923 4 C -0.134 4.134 5 C 0.132 3.868 6 N -0.365 5.365 7 N -0.301 5.301 8 C 0.081 3.919 9 C -0.281 4.281 10 C 0.577 3.423 11 O -0.547 6.547 12 N -0.632 5.632 13 C 0.025 3.975 14 C -0.099 4.099 15 C -0.221 4.221 16 C -0.121 4.121 17 C -0.150 4.150 18 C 0.092 3.908 19 C -0.462 4.462 20 H 0.074 0.926 21 C 0.073 3.927 22 N -0.801 5.801 23 Si 0.912 3.088 24 H -0.265 1.265 25 H -0.279 1.279 26 H -0.265 1.265 27 C 0.152 3.848 28 C -0.053 4.053 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.191 0.809 37 H 0.402 0.598 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.136 0.864 42 H 0.279 0.721 43 H 0.095 0.905 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 4.789 -16.316 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.096 0.904 4 C -0.172 4.172 5 C 0.012 3.988 6 N -0.146 5.146 7 N -0.120 5.120 8 C -0.107 4.107 9 C -0.295 4.295 10 C 0.365 3.635 11 O -0.427 6.427 12 N -0.272 5.272 13 C -0.069 4.069 14 C -0.119 4.119 15 C -0.241 4.241 16 C -0.140 4.140 17 C -0.170 4.170 18 C 0.089 3.911 19 C -0.493 4.493 20 H 0.092 0.908 21 C -0.143 4.143 22 N -0.427 5.427 23 Si 0.736 3.264 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.190 1.190 27 C 0.021 3.979 28 C -0.091 4.091 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.208 0.792 37 H 0.238 0.762 38 H 0.134 0.866 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.153 0.847 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.730 5.021 -17.153 19.472 hybrid contribution 0.988 -0.690 0.351 1.255 sum -6.742 4.331 -16.801 18.614 Atomic orbital electron populations 1.21784 0.93727 1.02413 1.02261 1.21353 0.96929 0.99813 0.93902 0.90444 1.22078 0.92877 1.02586 0.99682 1.21853 0.92622 1.02017 0.82338 1.48522 1.05758 1.53236 1.07121 1.77067 0.93656 1.23446 1.17789 1.24193 0.98481 0.97263 0.90726 1.19998 0.93422 1.20996 0.95119 1.17164 0.84742 0.77785 0.83802 1.90661 1.21485 1.53020 1.77530 1.42690 1.12328 1.66409 1.05812 1.17779 1.03718 1.03806 0.81628 1.20758 0.97756 0.98979 0.94454 1.20344 1.03091 1.07082 0.93609 1.20516 0.96822 0.99203 0.97423 1.21267 0.97897 1.02290 0.95596 1.17407 0.91818 0.89923 0.91995 1.19303 1.01525 1.30775 0.97656 0.90831 1.25860 0.99175 0.94769 0.94510 1.69754 1.28740 1.36340 1.07908 0.86310 0.79764 0.80852 0.79436 1.19000 1.20359 1.19005 1.21335 0.95432 0.95747 0.85427 1.20635 0.86719 1.02742 0.99019 0.91839 0.92397 0.92214 0.90415 0.88935 0.89723 0.88795 0.79211 0.76241 0.86569 0.89376 0.89537 0.84660 0.90942 0.88662 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.17 37.15 0.34 -0.63 16 2 C -0.10 -0.82 2.76 -90.31 -0.25 -1.07 16 3 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 4 C -0.13 -0.90 5.23 -26.53 -0.14 -1.04 16 5 C 0.13 1.12 7.27 -3.82 -0.03 1.09 16 6 N -0.37 -4.79 4.01 -56.39 -0.23 -5.02 16 7 N -0.30 -4.53 12.54 30.93 0.39 -4.14 16 8 C 0.08 1.23 11.52 -16.84 -0.19 1.04 16 9 C -0.28 -4.73 6.12 -105.21 -0.64 -5.37 16 10 C 0.58 11.62 7.61 -12.53 -0.10 11.52 16 11 O -0.55 -12.11 12.59 5.27 0.07 -12.04 16 12 N -0.63 -13.42 5.08 -10.45 -0.05 -13.47 16 13 C 0.02 0.61 6.46 -83.19 -0.54 0.07 16 14 C -0.10 -2.44 8.70 -39.43 -0.34 -2.78 16 15 C -0.22 -5.26 10.04 -39.35 -0.39 -5.65 16 16 C -0.12 -2.92 9.97 -39.98 -0.40 -3.32 16 17 C -0.15 -3.93 8.66 -39.28 -0.34 -4.27 16 18 C 0.09 2.42 5.62 -106.65 -0.60 1.82 16 19 C -0.46 -11.65 8.42 -37.87 -0.32 -11.97 16 20 H 0.07 1.74 7.08 -52.49 -0.37 1.37 16 21 C 0.07 1.77 5.36 -17.33 -0.09 1.68 16 22 N -0.80 -20.12 10.40 55.55 0.58 -19.54 16 23 Si 0.91 18.16 29.56 -169.99 -5.03 13.13 16 24 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 25 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 27 C 0.15 2.20 6.66 -81.60 -0.54 1.66 16 28 C -0.05 -0.63 4.69 -27.60 -0.13 -0.76 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 33 H 0.09 0.39 8.12 -51.93 -0.42 -0.03 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.19 2.44 7.52 -52.48 -0.39 2.04 16 37 H 0.40 7.74 6.50 -40.82 -0.27 7.47 16 38 H 0.12 2.80 5.79 -52.49 -0.30 2.50 16 39 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.14 3.62 5.77 -52.49 -0.30 3.32 16 42 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 43 H 0.10 1.15 8.11 -51.93 -0.42 0.72 16 44 H 0.11 1.43 7.47 -51.93 -0.39 1.05 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -30.86 357.48 -9.40 -40.26 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -5.81 Total: 13.42 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -4.71 Total: -17.98 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.69 Total: -42.17 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.07 Total: -12.04 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.86 -9.40 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335458080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.433 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds