Wall clock time and date at job start Tue Mar 31 2020 14:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.53222 * 2 1 4 4 C 1.53164 * 109.59018 * 120.17921 * 2 1 3 5 5 C 1.53219 * 109.55167 * 189.16526 * 4 2 1 6 6 N 1.46677 * 108.84323 * 309.37205 * 5 4 2 7 7 N 1.39627 * 127.22810 * 197.40172 * 6 5 4 8 8 C 1.30608 * 108.87654 * 179.66047 * 7 6 5 9 9 C 1.41478 * 108.07619 * 0.46737 * 8 7 6 10 10 C 1.47388 * 126.49453 * 179.82830 * 9 8 7 11 11 O 1.21610 * 120.00296 * 179.68514 * 10 9 8 12 12 N 1.34781 * 119.99905 * 359.69070 * 10 9 8 13 13 C 1.39034 * 119.99806 * 185.85777 * 12 10 9 14 14 C 1.38671 * 120.29037 * 24.78333 * 13 12 10 15 15 C 1.38209 * 120.02905 * 180.25138 * 14 13 12 16 16 C 1.38871 * 120.62231 * 359.78942 * 15 14 13 17 17 C 1.36464 * 120.58195 * 359.97438 * 16 15 14 18 18 C 1.40736 * 119.94218 * 359.97438 * 17 16 15 19 19 C 1.41057 * 120.29896 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99970 * 184.17313 * 19 18 17 21 21 C 1.39967 * 120.00105 * 3.90485 * 19 18 17 22 22 N 1.30848 * 119.99741 * 324.84405 * 21 19 18 23 23 Si 1.86798 * 119.99768 * 144.83996 * 21 19 18 24 24 H 1.48502 * 109.46969 * 95.00244 * 23 21 19 25 25 H 1.48500 * 109.46833 * 214.99636 * 23 21 19 26 26 H 1.48497 * 109.47372 * 335.00040 * 23 21 19 27 27 C 1.34614 * 124.43118 * 17.39252 * 6 5 4 28 28 C 1.50805 * 124.57392 * 0.09602 * 27 6 5 29 29 H 1.09003 * 109.46692 * 180.14749 * 1 2 3 30 30 H 1.09004 * 109.47071 * 300.14506 * 1 2 3 31 31 H 1.08993 * 109.47424 * 60.14542 * 1 2 3 32 32 H 1.09005 * 109.45979 * 309.19038 * 4 2 1 33 33 H 1.09005 * 109.46114 * 69.14487 * 4 2 1 34 34 H 1.08999 * 109.56919 * 69.17690 * 5 4 2 35 35 H 1.08996 * 109.57874 * 189.43093 * 5 4 2 36 36 H 1.08006 * 125.96257 * 180.28604 * 8 7 6 37 37 H 0.97001 * 120.00147 * 5.85344 * 12 10 9 38 38 H 1.07999 * 119.98393 * 0.02562 * 14 13 12 39 39 H 1.08000 * 119.68954 * 179.76252 * 15 14 13 40 40 H 1.07996 * 119.71354 * 179.97438 * 16 15 14 41 41 H 1.08000 * 120.02434 * 180.02562 * 17 16 15 42 42 H 0.96998 * 120.00096 * 180.02562 * 22 21 19 43 43 H 1.09001 * 109.71478 * 135.34600 * 28 27 6 44 44 H 1.08989 * 109.71595 * 255.99096 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0435 -0.7254 1.2474 5 6 3.5584 -0.5292 1.3675 6 7 4.1836 -0.8729 0.0859 7 7 5.5305 -1.1577 -0.1474 8 6 5.6927 -1.4231 -1.4159 9 6 4.4352 -1.3053 -2.0533 10 6 4.1552 -1.5145 -3.4852 11 8 3.0222 -1.3867 -3.9082 12 7 5.1548 -1.8474 -4.3257 13 6 4.9162 -1.9255 -5.6932 14 6 3.8780 -1.2051 -6.2643 15 6 3.6424 -1.2908 -7.6235 16 6 4.4403 -2.0911 -8.4306 17 6 5.4717 -2.8069 -7.8958 18 6 5.7338 -2.7367 -6.5149 19 6 6.7977 -3.4739 -5.9541 20 1 6.9531 -3.4699 -4.8853 21 6 7.6484 -4.2152 -6.7822 22 7 7.1728 -4.8041 -7.8494 23 14 9.4629 -4.3636 -6.3637 24 1 9.6941 -5.6168 -5.6012 25 1 10.2591 -4.3927 -7.6169 26 1 9.8779 -3.1996 -5.5403 27 6 3.5226 -0.9647 -1.0831 28 6 2.0429 -0.7264 -1.2506 29 1 -0.3633 -1.0277 0.0026 30 1 -0.3633 0.5161 0.8887 31 1 -0.3634 0.5115 -0.8912 32 1 1.5534 -0.3182 2.1318 33 1 1.8206 -1.7893 1.1664 34 1 3.7736 0.5111 1.6114 35 1 3.9495 -1.1767 2.1521 36 1 6.6248 -1.6840 -1.8952 37 1 6.0407 -2.0325 -3.9765 38 1 3.2510 -0.5797 -5.6461 39 1 2.8300 -0.7303 -8.0619 40 1 4.2428 -2.1475 -9.4909 41 1 6.0867 -3.4262 -8.5320 42 1 7.7623 -5.3182 -8.4231 43 1 1.8673 -0.1097 -2.1320 44 1 1.5269 -1.6801 -1.3596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335458082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:52 Heat of formation + Delta-G solvation = 51.773908 kcal Electronic energy + Delta-G solvation = -27025.440148 eV Core-core repulsion = 23329.455081 eV Total energy + Delta-G solvation = -3695.985067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63308 -39.15109 -37.36167 -36.92109 -33.84828 -33.61008 -33.06694 -31.11033 -29.70256 -29.37368 -27.99787 -26.72770 -25.24971 -24.12779 -22.56652 -21.72441 -21.18429 -20.39034 -19.24973 -18.93520 -17.48866 -17.18221 -16.22597 -15.91178 -15.27373 -15.08384 -15.04285 -14.70238 -14.30674 -14.25607 -13.88932 -13.75666 -13.47875 -13.09644 -12.87880 -12.62396 -12.55483 -12.36682 -12.21685 -11.89929 -11.81181 -11.36800 -11.18714 -11.16033 -11.11423 -11.02671 -10.96726 -10.62230 -10.49011 -10.07975 -9.71062 -9.31287 -9.24430 -8.91425 -8.69925 -8.46143 -7.48877 -6.95063 -6.74201 -4.27123 1.67446 2.31298 2.32050 2.75471 3.00916 3.03824 3.12466 3.31205 3.82412 4.00848 4.10226 4.23335 4.28606 4.37117 4.45856 4.49559 4.85849 4.87621 5.03635 5.12138 5.27618 5.29509 5.43222 5.45550 5.52758 5.54198 5.67159 5.74991 5.84556 5.91394 6.02252 6.12292 6.45051 6.52654 6.64379 6.71730 6.88324 6.92747 7.14796 7.31524 7.41955 7.64269 7.65297 7.89409 8.11760 8.15972 8.27398 8.50110 8.64010 8.86504 8.94691 9.19820 9.93199 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015657 B = 0.003462 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.865620 B = 8086.378145 C = 9629.505024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 H 0.077 0.923 4 C -0.134 4.134 5 C 0.133 3.867 6 N -0.365 5.365 7 N -0.301 5.301 8 C 0.080 3.920 9 C -0.280 4.280 10 C 0.575 3.425 11 O -0.547 6.547 12 N -0.631 5.631 13 C 0.006 3.994 14 C -0.086 4.086 15 C -0.244 4.244 16 C -0.107 4.107 17 C -0.196 4.196 18 C 0.095 3.905 19 C -0.462 4.462 20 H 0.078 0.922 21 C 0.086 3.914 22 N -0.760 5.760 23 Si 0.901 3.099 24 H -0.269 1.269 25 H -0.273 1.273 26 H -0.257 1.257 27 C 0.152 3.848 28 C -0.053 4.053 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.190 0.810 37 H 0.399 0.601 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.144 0.856 42 H 0.283 0.717 43 H 0.107 0.893 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.620 6.482 15.810 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.095 0.905 4 C -0.172 4.172 5 C 0.012 3.988 6 N -0.146 5.146 7 N -0.120 5.120 8 C -0.107 4.107 9 C -0.294 4.294 10 C 0.364 3.636 11 O -0.428 6.428 12 N -0.271 5.271 13 C -0.087 4.087 14 C -0.106 4.106 15 C -0.264 4.264 16 C -0.126 4.126 17 C -0.216 4.216 18 C 0.091 3.909 19 C -0.490 4.490 20 H 0.096 0.904 21 C -0.135 4.135 22 N -0.383 5.383 23 Si 0.724 3.276 24 H -0.195 1.195 25 H -0.198 1.198 26 H -0.180 1.180 27 C 0.020 3.980 28 C -0.091 4.091 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.207 0.793 37 H 0.235 0.765 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.161 0.839 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.798 6.554 16.649 18.809 hybrid contribution 1.069 -0.395 -0.486 1.239 sum -4.729 6.159 16.164 17.932 Atomic orbital electron populations 1.21786 0.93733 1.02422 1.02247 1.21353 0.96924 0.99797 0.93913 0.90469 1.22076 0.92872 1.02598 0.99676 1.21836 0.92631 1.02001 0.82349 1.48507 1.05710 1.53309 1.07119 1.77060 0.93701 1.23411 1.17822 1.24173 0.98475 0.97331 0.90764 1.20009 0.93436 1.20816 0.95145 1.17127 0.84759 0.78006 0.83745 1.90661 1.21444 1.53146 1.77510 1.42653 1.12164 1.66453 1.05873 1.17513 1.03257 1.06809 0.81170 1.20714 0.97261 0.98305 0.94365 1.20242 1.04349 1.07950 0.93814 1.20472 0.97002 0.97848 0.97243 1.21591 1.00183 1.04600 0.95206 1.17322 0.91285 0.90322 0.91972 1.19278 1.10225 1.24640 0.94840 0.90405 1.25982 1.01386 0.92099 0.94075 1.69844 1.37270 1.18772 1.12435 0.86428 0.81958 0.79800 0.79447 1.19456 1.19813 1.18020 1.21336 0.95423 0.95826 0.85396 1.20631 0.86726 1.02761 0.98995 0.92208 0.92406 0.91840 0.88943 0.90413 0.89767 0.88800 0.79284 0.76527 0.86718 0.89620 0.89772 0.83916 0.90564 0.87498 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.18 37.16 0.34 -0.65 16 2 C -0.10 -0.84 2.76 -90.30 -0.25 -1.09 16 3 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 4 C -0.13 -0.92 5.23 -26.53 -0.14 -1.06 16 5 C 0.13 1.14 7.27 -3.83 -0.03 1.11 16 6 N -0.37 -4.83 4.01 -56.40 -0.23 -5.06 16 7 N -0.30 -4.55 12.54 30.93 0.39 -4.16 16 8 C 0.08 1.22 11.52 -16.84 -0.19 1.03 16 9 C -0.28 -4.76 6.12 -105.22 -0.64 -5.40 16 10 C 0.58 11.76 7.61 -12.53 -0.10 11.67 16 11 O -0.55 -12.38 12.59 5.27 0.07 -12.31 16 12 N -0.63 -13.49 5.11 -10.46 -0.05 -13.55 16 13 C 0.01 0.15 6.46 -83.20 -0.54 -0.39 16 14 C -0.09 -2.15 8.70 -39.43 -0.34 -2.49 16 15 C -0.24 -5.91 10.04 -39.36 -0.39 -6.30 16 16 C -0.11 -2.63 9.97 -39.99 -0.40 -3.02 16 17 C -0.20 -5.16 9.01 -39.28 -0.35 -5.51 16 18 C 0.09 2.49 5.75 -106.65 -0.61 1.88 16 19 C -0.46 -11.57 8.65 -37.87 -0.33 -11.90 16 20 H 0.08 1.81 6.63 -52.48 -0.35 1.46 16 21 C 0.09 2.05 5.11 -17.32 -0.09 1.96 16 22 N -0.76 -18.60 10.56 55.55 0.59 -18.02 16 23 Si 0.90 17.47 29.67 -169.99 -5.04 12.43 16 24 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 25 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 26 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 27 C 0.15 2.22 6.66 -81.60 -0.54 1.68 16 28 C -0.05 -0.64 4.68 -27.60 -0.13 -0.77 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.40 8.12 -51.93 -0.42 -0.02 16 33 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.19 2.41 7.52 -52.48 -0.39 2.01 16 37 H 0.40 7.63 6.16 -40.82 -0.25 7.38 16 38 H 0.12 2.82 5.79 -52.49 -0.30 2.51 16 39 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.08 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.14 3.81 5.09 -52.49 -0.27 3.54 16 42 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 43 H 0.11 1.46 7.47 -51.93 -0.39 1.07 16 44 H 0.10 1.18 8.11 -51.94 -0.42 0.76 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -31.08 356.77 -9.38 -40.45 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -5.73 Total: 14.11 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -4.74 Total: -19.27 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.69 Total: -40.78 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.07 Total: -12.31 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.04 Total: 12.43 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.08 -9.38 -40.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335458082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.227 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds