Wall clock time and date at job start Tue Mar 31 2020 14:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.53222 * 2 1 4 4 C 1.53164 * 109.59018 * 120.17921 * 2 1 3 5 5 C 1.53219 * 109.55167 * 189.16526 * 4 2 1 6 6 N 1.46677 * 108.84323 * 309.37205 * 5 4 2 7 7 N 1.39627 * 127.22810 * 197.40172 * 6 5 4 8 8 C 1.30608 * 108.87654 * 179.66047 * 7 6 5 9 9 C 1.41478 * 108.07619 * 0.46737 * 8 7 6 10 10 C 1.47388 * 126.49453 * 179.82830 * 9 8 7 11 11 O 1.21610 * 120.00296 * 179.68514 * 10 9 8 12 12 N 1.34781 * 119.99905 * 359.69070 * 10 9 8 13 13 C 1.39034 * 119.99806 * 185.85777 * 12 10 9 14 14 C 1.38671 * 120.29037 * 24.78333 * 13 12 10 15 15 C 1.38209 * 120.02905 * 180.25138 * 14 13 12 16 16 C 1.38871 * 120.62231 * 359.78942 * 15 14 13 17 17 C 1.36464 * 120.58195 * 359.97438 * 16 15 14 18 18 C 1.40736 * 119.94218 * 359.97438 * 17 16 15 19 19 C 1.41057 * 120.29896 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99970 * 184.17313 * 19 18 17 21 21 C 1.39967 * 120.00105 * 3.90485 * 19 18 17 22 22 N 1.30848 * 119.99741 * 324.84405 * 21 19 18 23 23 Si 1.86798 * 119.99768 * 144.83996 * 21 19 18 24 24 H 1.48502 * 109.46969 * 95.00244 * 23 21 19 25 25 H 1.48500 * 109.46833 * 214.99636 * 23 21 19 26 26 H 1.48497 * 109.47372 * 335.00040 * 23 21 19 27 27 C 1.34614 * 124.43118 * 17.39252 * 6 5 4 28 28 C 1.50805 * 124.57392 * 0.09602 * 27 6 5 29 29 H 1.09003 * 109.46692 * 180.14749 * 1 2 3 30 30 H 1.09004 * 109.47071 * 300.14506 * 1 2 3 31 31 H 1.08993 * 109.47424 * 60.14542 * 1 2 3 32 32 H 1.09005 * 109.45979 * 309.19038 * 4 2 1 33 33 H 1.09005 * 109.46114 * 69.14487 * 4 2 1 34 34 H 1.08999 * 109.56919 * 69.17690 * 5 4 2 35 35 H 1.08996 * 109.57874 * 189.43093 * 5 4 2 36 36 H 1.08006 * 125.96257 * 180.28604 * 8 7 6 37 37 H 0.97001 * 120.00147 * 5.85344 * 12 10 9 38 38 H 1.07999 * 119.98393 * 0.02562 * 14 13 12 39 39 H 1.08000 * 119.68954 * 179.76252 * 15 14 13 40 40 H 1.07996 * 119.71354 * 179.97438 * 16 15 14 41 41 H 1.08000 * 120.02434 * 180.02562 * 17 16 15 42 42 H 0.96998 * 120.00096 * 180.02562 * 22 21 19 43 43 H 1.09001 * 109.71478 * 135.34600 * 28 27 6 44 44 H 1.08989 * 109.71595 * 255.99096 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0435 -0.7254 1.2474 5 6 3.5584 -0.5292 1.3675 6 7 4.1836 -0.8729 0.0859 7 7 5.5305 -1.1577 -0.1474 8 6 5.6927 -1.4231 -1.4159 9 6 4.4352 -1.3053 -2.0533 10 6 4.1552 -1.5145 -3.4852 11 8 3.0222 -1.3867 -3.9082 12 7 5.1548 -1.8474 -4.3257 13 6 4.9162 -1.9255 -5.6932 14 6 3.8780 -1.2051 -6.2643 15 6 3.6424 -1.2908 -7.6235 16 6 4.4403 -2.0911 -8.4306 17 6 5.4717 -2.8069 -7.8958 18 6 5.7338 -2.7367 -6.5149 19 6 6.7977 -3.4739 -5.9541 20 1 6.9531 -3.4699 -4.8853 21 6 7.6484 -4.2152 -6.7822 22 7 7.1728 -4.8041 -7.8494 23 14 9.4629 -4.3636 -6.3637 24 1 9.6941 -5.6168 -5.6012 25 1 10.2591 -4.3927 -7.6169 26 1 9.8779 -3.1996 -5.5403 27 6 3.5226 -0.9647 -1.0831 28 6 2.0429 -0.7264 -1.2506 29 1 -0.3633 -1.0277 0.0026 30 1 -0.3633 0.5161 0.8887 31 1 -0.3634 0.5115 -0.8912 32 1 1.5534 -0.3182 2.1318 33 1 1.8206 -1.7893 1.1664 34 1 3.7736 0.5111 1.6114 35 1 3.9495 -1.1767 2.1521 36 1 6.6248 -1.6840 -1.8952 37 1 6.0407 -2.0325 -3.9765 38 1 3.2510 -0.5797 -5.6461 39 1 2.8300 -0.7303 -8.0619 40 1 4.2428 -2.1475 -9.4909 41 1 6.0867 -3.4262 -8.5320 42 1 7.7623 -5.3182 -8.4231 43 1 1.8673 -0.1097 -2.1320 44 1 1.5269 -1.6801 -1.3596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335458082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:51 Heat of formation + Delta-G solvation = 34.629728 kcal Electronic energy + Delta-G solvation = -27026.183575 eV Core-core repulsion = 23329.455081 eV Total energy + Delta-G solvation = -3696.728495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.76122 -40.83685 -38.77712 -38.13182 -35.68483 -35.36757 -33.99701 -32.14250 -31.54223 -30.78745 -29.40750 -27.73792 -27.06882 -25.03945 -23.96776 -23.04080 -22.68435 -21.83613 -20.69026 -20.00092 -19.27921 -18.69410 -17.85144 -16.96752 -16.79768 -16.49936 -16.11783 -15.90891 -15.72318 -15.48159 -15.16989 -14.84858 -14.74154 -14.59308 -14.38257 -14.15203 -13.80026 -13.62180 -13.34287 -13.15365 -12.98601 -12.88573 -12.69616 -12.57247 -12.29561 -12.11254 -11.93365 -11.81045 -11.68211 -11.57885 -11.52161 -11.01941 -10.75709 -10.44286 -10.36723 -9.72133 -9.43513 -8.77867 -8.61576 -6.18332 0.42967 0.91407 1.06898 1.31523 1.35824 1.41304 1.52439 1.65018 2.18832 2.52203 2.55581 2.66972 3.35073 3.43902 3.62775 3.66662 3.78739 3.90734 4.06347 4.23903 4.26820 4.36518 4.55980 4.58873 4.60798 4.68310 4.71075 4.77197 4.82658 4.86262 4.92293 5.05440 5.07191 5.11181 5.28134 5.30501 5.35292 5.42026 5.44232 5.54098 5.76554 5.87135 5.98014 6.22758 6.26609 6.33681 6.49320 6.70941 6.74018 7.01462 7.08149 7.50473 8.16191 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015657 B = 0.003462 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.865620 B = 8086.378145 C = 9629.505024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.081 0.919 4 C -0.126 4.126 5 C 0.119 3.881 6 N -0.356 5.356 7 N -0.312 5.312 8 C 0.080 3.920 9 C -0.314 4.314 10 C 0.576 3.424 11 O -0.576 6.576 12 N -0.632 5.632 13 C -0.003 4.003 14 C -0.100 4.100 15 C -0.254 4.254 16 C -0.111 4.111 17 C -0.227 4.227 18 C 0.069 3.931 19 C -0.485 4.485 20 H 0.088 0.912 21 C 0.047 3.953 22 N -0.788 5.788 23 Si 0.979 3.021 24 H -0.260 1.260 25 H -0.267 1.267 26 H -0.252 1.252 27 C 0.158 3.842 28 C -0.054 4.054 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.207 0.793 37 H 0.408 0.592 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.294 0.706 43 H 0.085 0.915 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.117 6.873 18.456 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.164 4.164 5 C 0.000 4.000 6 N -0.136 5.136 7 N -0.131 5.131 8 C -0.107 4.107 9 C -0.328 4.328 10 C 0.366 3.634 11 O -0.458 6.458 12 N -0.273 5.273 13 C -0.097 4.097 14 C -0.120 4.120 15 C -0.274 4.274 16 C -0.130 4.130 17 C -0.247 4.247 18 C 0.065 3.935 19 C -0.512 4.512 20 H 0.106 0.894 21 C -0.173 4.173 22 N -0.411 5.411 23 Si 0.798 3.202 24 H -0.185 1.185 25 H -0.192 1.192 26 H -0.175 1.175 27 C 0.024 3.976 28 C -0.092 4.092 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.224 0.776 37 H 0.245 0.755 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.153 0.847 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.297 6.949 19.337 21.220 hybrid contribution 0.836 -0.531 -1.243 1.590 sum -4.461 6.418 18.094 19.710 Atomic orbital electron populations 1.21770 0.92461 1.02673 1.02984 1.21329 0.97884 0.99497 0.92557 0.90101 1.22104 0.91682 1.02401 1.00202 1.22377 0.93527 1.03552 0.80534 1.48942 1.05012 1.51571 1.08112 1.77015 0.94950 1.23673 1.17493 1.24424 0.98570 0.96949 0.90774 1.19837 0.95292 1.24058 0.93645 1.17593 0.84052 0.76741 0.84985 1.90626 1.22484 1.54300 1.78388 1.42623 1.12975 1.66895 1.04812 1.17675 1.02956 1.06358 0.82724 1.20868 0.97594 0.98707 0.94876 1.20508 1.04975 1.08178 0.93710 1.20701 0.96456 0.97350 0.98468 1.21692 1.01377 1.06013 0.95606 1.17670 0.92155 0.91302 0.92411 1.19604 1.10765 1.25118 0.95726 0.89438 1.26923 1.05646 0.91091 0.93649 1.69847 1.39278 1.18842 1.13152 0.85251 0.75513 0.80047 0.79377 1.18490 1.19166 1.17522 1.21643 0.96241 0.94183 0.85521 1.20693 0.85409 1.02630 1.00499 0.92229 0.90060 0.92733 0.85176 0.90829 0.87798 0.87148 0.77630 0.75506 0.86892 0.87492 0.87574 0.84653 0.89459 0.89614 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.18 71.98 0.66 -0.97 16 2 C -0.09 -1.36 2.76 -10.59 -0.03 -1.39 16 3 H 0.08 1.15 8.12 -2.39 -0.02 1.13 16 4 C -0.13 -1.29 5.23 30.72 0.16 -1.13 16 5 C 0.12 1.65 7.27 86.42 0.63 2.28 16 6 N -0.36 -8.81 4.01 -332.35 -1.33 -10.15 16 7 N -0.31 -9.02 12.54 -56.06 -0.70 -9.72 16 8 C 0.08 2.41 11.52 85.67 0.99 3.40 16 9 C -0.31 -10.82 6.12 -20.25 -0.12 -10.94 16 10 C 0.58 24.37 7.61 86.65 0.66 25.03 16 11 O -0.58 -27.17 12.59 -4.06 -0.05 -27.22 16 12 N -0.63 -27.90 5.11 -305.24 -1.56 -29.46 16 13 C 0.00 -0.15 6.46 38.90 0.25 0.10 16 14 C -0.10 -5.15 8.70 22.37 0.19 -4.96 16 15 C -0.25 -12.55 10.04 22.41 0.22 -12.33 16 16 C -0.11 -5.57 9.97 22.01 0.22 -5.35 16 17 C -0.23 -12.33 9.01 22.47 0.20 -12.13 16 18 C 0.07 3.72 5.75 -21.18 -0.12 3.60 16 19 C -0.49 -24.69 8.65 23.38 0.20 -24.49 16 20 H 0.09 4.12 6.63 -2.91 -0.02 4.10 16 21 C 0.05 2.22 5.11 85.26 0.44 2.65 16 22 N -0.79 -38.93 10.56 21.83 0.23 -38.70 16 23 Si 0.98 35.28 29.67 68.60 2.04 37.31 16 24 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 25 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 26 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 27 C 0.16 4.57 6.66 41.99 0.28 4.85 16 28 C -0.05 -1.30 4.68 30.03 0.14 -1.16 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.13 0.46 8.12 -2.38 -0.02 0.44 16 33 H 0.07 0.87 8.12 -2.38 -0.02 0.85 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.21 5.15 7.52 -2.91 -0.02 5.13 16 37 H 0.41 16.01 6.16 -92.71 -0.57 15.44 16 38 H 0.11 5.77 5.79 -2.91 -0.02 5.75 16 39 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.14 7.46 5.09 -2.91 -0.01 7.45 16 42 H 0.29 12.87 8.30 -92.71 -0.77 12.10 16 43 H 0.09 2.45 7.47 -2.39 -0.02 2.43 16 44 H 0.09 2.26 8.11 -2.39 -0.02 2.24 16 Total: -1.00 -69.25 356.77 4.06 -65.19 By element: Atomic # 1 Polarization: 45.20 SS G_CDS: 0.47 Total: 45.67 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 4.97 Total: -32.93 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -3.37 Total: -88.02 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.05 Total: -27.22 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.04 Total: 37.31 kcal Total: -69.25 4.06 -65.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335458082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.823 kcal (2) G-P(sol) polarization free energy of solvation -69.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds