Wall clock time and date at job start Tue Mar 31 2020 13:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47199 * 2 1 4 4 H 1.08997 * 109.46947 * 54.22136 * 3 2 1 5 5 C 1.52999 * 109.47280 * 174.22079 * 3 2 1 6 6 C 1.53002 * 109.46938 * 294.21972 * 3 2 1 7 7 H 1.08995 * 109.46905 * 54.43492 * 6 3 2 8 8 N 1.46899 * 109.47003 * 174.43091 * 6 3 2 9 9 C 1.46895 * 111.00254 * 273.60020 * 8 6 3 10 10 C 1.52997 * 109.47523 * 185.74082 * 9 8 6 11 11 O 1.42899 * 109.46811 * 64.99716 * 10 9 8 12 12 C 1.42908 * 113.99787 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47022 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00327 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99766 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99546 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00112 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47412 * 90.00295 * 17 15 13 19 19 H 1.48502 * 109.46720 * 210.00333 * 17 15 13 20 20 H 1.48501 * 109.47309 * 329.99795 * 17 15 13 21 21 C 1.50695 * 109.47070 * 294.43384 * 6 3 2 22 22 C 1.38239 * 119.99133 * 100.00281 * 21 6 3 23 23 C 1.38213 * 120.01669 * 179.97438 * 22 21 6 24 24 C 1.38349 * 119.98687 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 120.01388 * 180.02562 * 24 23 22 26 26 C 1.38353 * 119.97066 * 0.02562 * 24 23 22 27 27 C 1.38211 * 119.99286 * 0.02562 * 26 24 23 28 28 H 1.08999 * 109.47106 * 298.26224 * 1 2 3 29 29 H 1.08993 * 109.47289 * 58.26168 * 1 2 3 30 30 H 1.08999 * 109.47156 * 178.26704 * 1 2 3 31 31 H 1.09001 * 109.47362 * 239.99877 * 2 1 3 32 32 H 1.09008 * 109.46999 * 119.99874 * 2 1 3 33 33 H 1.08997 * 109.47072 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.47334 * 300.00255 * 5 3 2 35 35 H 1.09007 * 109.47371 * 59.99645 * 5 3 2 36 36 H 1.00900 * 110.99988 * 37.55408 * 8 6 3 37 37 H 1.09003 * 109.47348 * 305.74365 * 9 8 6 38 38 H 1.09007 * 109.47311 * 65.73839 * 9 8 6 39 39 H 1.08995 * 109.47414 * 185.00017 * 10 9 8 40 40 H 1.08998 * 109.47163 * 305.00189 * 10 9 8 41 41 H 1.09003 * 109.46973 * 300.00177 * 12 11 10 42 42 H 1.08997 * 109.46877 * 59.99772 * 12 11 10 43 43 H 0.97005 * 119.99574 * 179.97438 * 16 15 13 44 44 H 1.08000 * 119.98741 * 0.25173 * 22 21 6 45 45 H 1.08003 * 120.00741 * 180.02562 * 23 22 21 46 46 H 1.08011 * 120.00332 * 179.97438 * 26 24 23 47 47 H 1.07994 * 119.99581 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5946 1.9853 0.8337 5 6 3.5630 1.4450 0.1453 6 6 1.6520 2.1206 -1.3156 7 1 0.5763 2.0316 -1.4667 8 7 2.0232 3.5409 -1.2624 9 6 0.9570 4.3410 -0.6453 10 6 1.3155 5.8256 -0.7366 11 8 1.3426 6.2255 -2.1082 12 6 1.6698 7.6025 -2.3058 13 6 1.6689 7.9124 -3.7806 14 1 1.4416 7.1355 -4.4956 15 6 1.9592 9.1876 -4.2172 16 7 1.9589 9.4579 -5.5043 17 14 2.3531 10.5312 -2.9807 18 1 3.8154 10.5540 -2.7234 19 1 1.9256 11.8452 -3.5246 20 1 1.6312 10.2626 -1.7110 21 6 2.3764 1.4543 -2.4567 22 6 1.7222 0.5221 -3.2402 23 6 2.3859 -0.0889 -4.2874 24 6 3.7051 0.2330 -4.5517 25 17 4.5393 -0.5335 -5.8672 26 6 4.3594 1.1662 -3.7672 27 6 3.6950 1.7757 -2.7197 28 1 -0.3633 0.4866 0.9051 29 1 -0.3633 0.5406 -0.8739 30 1 -0.3633 -1.0272 -0.0311 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 3.9264 2.4726 0.1448 34 1 3.8395 0.9618 1.0825 35 1 4.0085 0.9021 -0.6885 36 1 2.8982 3.6680 -0.7762 37 1 0.0182 4.1610 -1.1691 38 1 0.8492 4.0570 0.4016 39 1 0.5695 6.4131 -0.2015 40 1 2.2962 5.9907 -0.2906 41 1 0.9314 8.2272 -1.8031 42 1 2.6580 7.8040 -1.8924 43 1 2.1628 10.3552 -5.8115 44 1 0.6908 0.2744 -3.0368 45 1 1.8745 -0.8170 -4.8997 46 1 5.3895 1.4176 -3.9729 47 1 4.2058 2.5038 -2.1071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339070907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:47 Heat of formation + Delta-G solvation = -40.767970 kcal Electronic energy + Delta-G solvation = -25594.102614 eV Core-core repulsion = 21995.212123 eV Total energy + Delta-G solvation = -3598.890490 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.155 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.27411 -37.92518 -36.87828 -36.26012 -34.31191 -32.57686 -31.50354 -31.20450 -29.95170 -28.81783 -27.23483 -25.39246 -23.54483 -22.79432 -21.91941 -21.79903 -21.53790 -19.66626 -17.30248 -16.80953 -16.19397 -16.04089 -15.66165 -15.42049 -15.01284 -14.64604 -14.40272 -14.17416 -14.03748 -13.77546 -13.49050 -13.24452 -13.19048 -12.94792 -12.90778 -12.54467 -12.23173 -12.15035 -11.90830 -11.67640 -11.51691 -11.42491 -11.30279 -11.07337 -10.90365 -10.83370 -10.78508 -10.69880 -10.65557 -10.37967 -9.82925 -9.12299 -9.01305 -8.79520 -8.56462 -8.40900 -8.23982 -6.06793 -4.05082 1.12645 1.28824 2.09939 3.26684 3.33472 3.34748 3.57206 4.14295 4.38847 4.46939 4.55478 4.65328 4.72980 4.78960 4.85308 4.90936 5.03770 5.20574 5.24318 5.26999 5.32787 5.36117 5.43211 5.47885 5.52943 5.59676 5.63678 5.66543 5.77512 5.79060 5.84184 5.90053 5.92601 5.97995 6.01204 6.10027 6.16307 6.20482 6.25041 6.51234 6.64022 6.77217 7.03989 7.10519 7.44403 7.65153 8.09952 8.73530 9.06961 9.52865 11.06451 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.003301 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.644927 B = 8480.537792 C =10522.435123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.118 4.118 4 H 0.073 0.927 5 C -0.157 4.157 6 C 0.127 3.873 7 H 0.091 0.909 8 N -0.667 5.667 9 C 0.066 3.934 10 C 0.062 3.938 11 O -0.363 6.363 12 C 0.168 3.832 13 C -0.514 4.514 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.896 5.896 17 Si 0.875 3.125 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.267 1.267 21 C -0.050 4.050 22 C -0.104 4.104 23 C -0.113 4.113 24 C -0.038 4.038 25 Cl -0.081 7.081 26 C -0.112 4.112 27 C -0.080 4.080 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.339 0.661 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.041 0.959 40 H 0.035 0.965 41 H -0.001 1.001 42 H -0.004 1.004 43 H 0.266 0.734 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.485 -22.598 12.238 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.138 4.138 4 H 0.091 0.909 5 C -0.214 4.214 6 C 0.017 3.983 7 H 0.109 0.891 8 N -0.298 5.298 9 C -0.063 4.063 10 C -0.017 4.017 11 O -0.282 6.282 12 C 0.093 3.907 13 C -0.552 4.552 14 H 0.101 0.899 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.702 3.298 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.192 1.192 21 C -0.051 4.051 22 C -0.123 4.123 23 C -0.131 4.131 24 C -0.065 4.065 25 Cl -0.052 7.052 26 C -0.131 4.131 27 C -0.098 4.098 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.159 0.841 37 H 0.098 0.902 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.017 0.983 42 H 0.014 0.986 43 H 0.075 0.925 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.338 -22.470 11.182 25.134 hybrid contribution 0.490 0.806 1.534 1.801 sum 1.828 -21.664 12.716 25.187 Atomic orbital electron populations 1.21849 0.95898 1.01610 1.01948 1.21556 0.95846 0.95920 1.02280 1.21836 0.96735 0.97114 0.98103 0.90915 1.22058 0.95220 1.01910 1.02239 1.20618 0.99245 0.87466 0.91018 0.89133 1.60435 1.05436 1.05241 1.58700 1.21996 0.95628 0.92561 0.96120 1.22289 0.98757 0.93616 0.86991 1.88031 1.90922 1.28409 1.20850 1.20578 0.93171 0.78794 0.98192 1.20903 1.47482 0.96910 0.89952 0.89918 1.24771 0.95029 0.98025 0.95187 1.69887 1.49229 1.21138 1.13254 0.86862 0.79176 0.81778 0.81962 1.20000 1.20852 1.19199 1.19779 0.94002 0.95144 0.96152 1.20915 0.99796 0.96807 0.94769 1.20935 0.92750 1.01060 0.98400 1.20883 0.93734 0.99056 0.92786 1.98359 1.78440 1.80677 1.47727 1.21054 1.00697 0.96092 0.95241 1.20948 0.94235 0.98071 0.96573 0.92870 0.92360 0.92772 0.91354 0.92180 0.92504 0.92667 0.91405 0.84064 0.90182 0.94599 0.94102 0.94706 0.98307 0.98644 0.92451 0.85494 0.85302 0.85164 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.73 37.15 0.36 -0.74 16 2 C -0.12 -0.89 5.25 -26.73 -0.14 -1.03 16 3 C -0.12 -0.98 2.24 -90.62 -0.20 -1.18 16 4 H 0.07 0.61 7.54 -51.93 -0.39 0.22 16 5 C -0.16 -1.27 7.76 37.16 0.29 -0.98 16 6 C 0.13 1.33 1.97 -68.87 -0.14 1.20 16 7 H 0.09 0.97 5.72 -51.93 -0.30 0.67 16 8 N -0.67 -8.72 5.60 -107.96 -0.60 -9.33 16 9 C 0.07 0.88 5.90 -3.83 -0.02 0.85 16 10 C 0.06 1.04 6.26 37.16 0.23 1.28 16 11 O -0.36 -8.49 10.27 -35.23 -0.36 -8.85 16 12 C 0.17 4.32 4.76 36.00 0.17 4.49 16 13 C -0.51 -15.58 9.99 -34.44 -0.34 -15.93 16 14 H 0.08 2.76 8.06 -52.48 -0.42 2.34 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 17 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 21 C -0.05 -0.57 3.87 -104.62 -0.40 -0.97 16 22 C -0.10 -1.11 8.60 -39.59 -0.34 -1.45 16 23 C -0.11 -1.23 9.83 -39.55 -0.39 -1.61 16 24 C -0.04 -0.45 6.32 -39.50 -0.25 -0.70 16 25 Cl -0.08 -0.91 28.96 -51.86 -1.50 -2.41 16 26 C -0.11 -1.32 9.83 -39.55 -0.39 -1.71 16 27 C -0.08 -0.94 6.96 -39.59 -0.28 -1.22 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.43 6.40 -51.93 -0.33 0.10 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.56 6.44 -51.93 -0.33 0.22 16 32 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 33 H 0.06 0.46 6.25 -51.93 -0.32 0.14 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.58 5.66 -51.93 -0.29 0.29 16 36 H 0.34 4.04 6.05 -39.29 -0.24 3.80 16 37 H 0.08 1.12 7.91 -51.93 -0.41 0.71 16 38 H 0.04 0.38 7.58 -51.93 -0.39 -0.02 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 42 H 0.00 -0.10 7.57 -51.93 -0.39 -0.50 16 43 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.13 1.11 8.04 -52.49 -0.42 0.69 16 45 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 46 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 47 H 0.13 1.47 6.42 -52.49 -0.34 1.14 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -32.71 381.88 -10.06 -42.77 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.51 Total: 0.07 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -1.94 Total: -17.65 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.17 Total: -36.64 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.36 Total: -8.85 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.71 -10.06 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339070907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.002 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds