Wall clock time and date at job start Tue Mar 31 2020 13:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47199 * 2 1 4 4 H 1.08997 * 109.46947 * 54.22136 * 3 2 1 5 5 C 1.52999 * 109.47280 * 174.22079 * 3 2 1 6 6 C 1.53002 * 109.46938 * 294.21972 * 3 2 1 7 7 H 1.08995 * 109.46905 * 54.43492 * 6 3 2 8 8 N 1.46899 * 109.47003 * 174.43091 * 6 3 2 9 9 C 1.46895 * 111.00254 * 273.60020 * 8 6 3 10 10 C 1.52997 * 109.47523 * 185.74082 * 9 8 6 11 11 O 1.42899 * 109.46811 * 64.99716 * 10 9 8 12 12 C 1.42908 * 113.99787 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47022 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00327 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99766 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99546 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00112 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47412 * 90.00295 * 17 15 13 19 19 H 1.48502 * 109.46720 * 210.00333 * 17 15 13 20 20 H 1.48501 * 109.47309 * 329.99795 * 17 15 13 21 21 C 1.50695 * 109.47070 * 294.43384 * 6 3 2 22 22 C 1.38239 * 119.99133 * 100.00281 * 21 6 3 23 23 C 1.38213 * 120.01669 * 179.97438 * 22 21 6 24 24 C 1.38349 * 119.98687 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 120.01388 * 180.02562 * 24 23 22 26 26 C 1.38353 * 119.97066 * 0.02562 * 24 23 22 27 27 C 1.38211 * 119.99286 * 0.02562 * 26 24 23 28 28 H 1.08999 * 109.47106 * 298.26224 * 1 2 3 29 29 H 1.08993 * 109.47289 * 58.26168 * 1 2 3 30 30 H 1.08999 * 109.47156 * 178.26704 * 1 2 3 31 31 H 1.09001 * 109.47362 * 239.99877 * 2 1 3 32 32 H 1.09008 * 109.46999 * 119.99874 * 2 1 3 33 33 H 1.08997 * 109.47072 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.47334 * 300.00255 * 5 3 2 35 35 H 1.09007 * 109.47371 * 59.99645 * 5 3 2 36 36 H 1.00900 * 110.99988 * 37.55408 * 8 6 3 37 37 H 1.09003 * 109.47348 * 305.74365 * 9 8 6 38 38 H 1.09007 * 109.47311 * 65.73839 * 9 8 6 39 39 H 1.08995 * 109.47414 * 185.00017 * 10 9 8 40 40 H 1.08998 * 109.47163 * 305.00189 * 10 9 8 41 41 H 1.09003 * 109.46973 * 300.00177 * 12 11 10 42 42 H 1.08997 * 109.46877 * 59.99772 * 12 11 10 43 43 H 0.97005 * 119.99574 * 179.97438 * 16 15 13 44 44 H 1.08000 * 119.98741 * 0.25173 * 22 21 6 45 45 H 1.08003 * 120.00741 * 180.02562 * 23 22 21 46 46 H 1.08011 * 120.00332 * 179.97438 * 26 24 23 47 47 H 1.07994 * 119.99581 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5946 1.9853 0.8337 5 6 3.5630 1.4450 0.1453 6 6 1.6520 2.1206 -1.3156 7 1 0.5763 2.0316 -1.4667 8 7 2.0232 3.5409 -1.2624 9 6 0.9570 4.3410 -0.6453 10 6 1.3155 5.8256 -0.7366 11 8 1.3426 6.2255 -2.1082 12 6 1.6698 7.6025 -2.3058 13 6 1.6689 7.9124 -3.7806 14 1 1.4416 7.1355 -4.4956 15 6 1.9592 9.1876 -4.2172 16 7 1.9589 9.4579 -5.5043 17 14 2.3531 10.5312 -2.9807 18 1 3.8154 10.5540 -2.7234 19 1 1.9256 11.8452 -3.5246 20 1 1.6312 10.2626 -1.7110 21 6 2.3764 1.4543 -2.4567 22 6 1.7222 0.5221 -3.2402 23 6 2.3859 -0.0889 -4.2874 24 6 3.7051 0.2330 -4.5517 25 17 4.5393 -0.5335 -5.8672 26 6 4.3594 1.1662 -3.7672 27 6 3.6950 1.7757 -2.7197 28 1 -0.3633 0.4866 0.9051 29 1 -0.3633 0.5406 -0.8739 30 1 -0.3633 -1.0272 -0.0311 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 3.9264 2.4726 0.1448 34 1 3.8395 0.9618 1.0825 35 1 4.0085 0.9021 -0.6885 36 1 2.8982 3.6680 -0.7762 37 1 0.0182 4.1610 -1.1691 38 1 0.8492 4.0570 0.4016 39 1 0.5695 6.4131 -0.2015 40 1 2.2962 5.9907 -0.2906 41 1 0.9314 8.2272 -1.8031 42 1 2.6580 7.8040 -1.8924 43 1 2.1628 10.3552 -5.8115 44 1 0.6908 0.2744 -3.0368 45 1 1.8745 -0.8170 -4.8997 46 1 5.3895 1.4176 -3.9729 47 1 4.2058 2.5038 -2.1071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339070907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:46 Heat of formation + Delta-G solvation = -60.288661 kcal Electronic energy + Delta-G solvation = -25594.949094 eV Core-core repulsion = 21995.212123 eV Total energy + Delta-G solvation = -3599.736971 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10825 -38.97316 -38.29120 -37.17073 -35.37378 -34.67782 -32.42602 -32.07741 -30.69883 -30.39524 -28.79289 -26.27132 -24.31166 -23.91255 -23.63353 -22.72567 -22.66237 -20.42420 -19.06181 -18.12354 -17.48435 -17.05596 -16.95571 -16.33650 -16.29773 -16.18063 -15.55249 -15.12383 -14.93589 -14.68540 -14.53581 -14.37211 -14.29688 -14.22764 -13.96530 -13.80167 -13.38010 -13.13509 -12.91566 -12.75506 -12.70283 -12.44697 -12.38281 -12.33924 -12.08039 -11.97842 -11.81197 -11.73683 -11.58180 -11.39640 -11.35434 -11.23856 -10.90261 -10.26261 -9.88908 -9.45446 -9.15924 -8.35161 -6.42631 0.23779 0.41169 1.20116 1.33383 1.37048 1.47821 2.30750 2.69054 2.97429 3.16182 3.25018 3.74525 3.84154 3.92024 4.02465 4.07653 4.16910 4.28789 4.30202 4.41457 4.46255 4.52982 4.56360 4.58573 4.66756 4.69624 4.74363 4.79553 4.84084 4.88216 4.98057 5.03085 5.06167 5.07194 5.17265 5.23559 5.30878 5.34187 5.34747 5.41397 5.47583 5.55397 5.62710 5.91206 5.97842 6.18733 6.53227 6.62355 6.85769 7.22336 8.82409 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.003301 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.644927 B = 8480.537792 C =10522.435123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.108 4.108 4 H 0.079 0.921 5 C -0.156 4.156 6 C 0.132 3.868 7 H 0.090 0.910 8 N -0.691 5.691 9 C 0.074 3.926 10 C 0.051 3.949 11 O -0.393 6.393 12 C 0.180 3.820 13 C -0.542 4.542 14 H 0.026 0.974 15 C 0.011 3.989 16 N -0.945 5.945 17 Si 0.958 3.042 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.244 1.244 21 C -0.057 4.057 22 C -0.108 4.108 23 C -0.117 4.117 24 C -0.051 4.051 25 Cl -0.080 7.080 26 C -0.125 4.125 27 C -0.091 4.091 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.344 0.656 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.009 0.991 42 H 0.008 0.992 43 H 0.272 0.728 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.136 0.864 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -22.438 15.115 27.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.128 4.128 4 H 0.097 0.903 5 C -0.213 4.213 6 C 0.022 3.978 7 H 0.108 0.892 8 N -0.324 5.324 9 C -0.055 4.055 10 C -0.026 4.026 11 O -0.313 6.313 12 C 0.104 3.896 13 C -0.580 4.580 14 H 0.044 0.956 15 C -0.187 4.187 16 N -0.584 5.584 17 Si 0.779 3.221 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.167 1.167 21 C -0.058 4.058 22 C -0.126 4.126 23 C -0.135 4.135 24 C -0.078 4.078 25 Cl -0.051 7.051 26 C -0.144 4.144 27 C -0.109 4.109 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.165 0.835 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.027 0.973 42 H 0.025 0.975 43 H 0.081 0.919 44 H 0.163 0.837 45 H 0.163 0.837 46 H 0.153 0.847 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.199 -22.345 14.073 26.434 hybrid contribution 0.511 0.642 0.564 0.995 sum 1.710 -21.703 14.638 26.234 Atomic orbital electron populations 1.21842 0.95446 1.02034 1.01895 1.21521 0.96187 0.95245 1.02287 1.21745 0.96863 0.97427 0.96774 0.90252 1.22037 0.95017 1.01803 1.02412 1.20598 0.98981 0.86299 0.91901 0.89232 1.60363 1.05788 1.06726 1.59489 1.21919 0.95038 0.90368 0.98164 1.22698 1.00099 0.96010 0.83833 1.87983 1.91067 1.26923 1.25282 1.20259 0.93919 0.80513 0.94891 1.21182 1.48565 0.96313 0.91951 0.95600 1.25874 0.94113 1.00983 0.97684 1.70055 1.50016 1.22352 1.16026 0.85581 0.79812 0.77401 0.79341 1.18451 1.19911 1.16749 1.19972 0.93944 0.95325 0.96567 1.21165 1.00619 0.96440 0.94391 1.21184 0.92521 1.01245 0.98597 1.21040 0.94286 0.99420 0.93045 1.98352 1.78491 1.80632 1.47666 1.21209 1.01185 0.96421 0.95541 1.21046 0.94704 0.98343 0.96801 0.92501 0.92827 0.92143 0.92089 0.91415 0.92664 0.91625 0.92247 0.83488 0.91239 0.90833 0.92621 0.93403 0.97291 0.97475 0.91891 0.83682 0.83715 0.84657 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.73 71.98 0.70 -1.17 16 2 C -0.11 -1.50 5.25 30.59 0.16 -1.34 16 3 C -0.11 -1.59 2.24 -10.79 -0.02 -1.61 16 4 H 0.08 1.09 7.54 -2.39 -0.02 1.07 16 5 C -0.16 -2.27 7.76 71.98 0.56 -1.71 16 6 C 0.13 2.62 1.97 44.17 0.09 2.71 16 7 H 0.09 1.80 5.72 -2.39 -0.01 1.78 16 8 N -0.69 -17.31 5.60 -495.47 -2.77 -20.08 16 9 C 0.07 1.82 5.90 86.30 0.51 2.33 16 10 C 0.05 1.62 6.26 71.98 0.45 2.07 16 11 O -0.39 -18.31 10.27 -148.98 -1.53 -19.84 16 12 C 0.18 9.14 4.76 71.24 0.34 9.48 16 13 C -0.54 -33.81 9.99 25.60 0.26 -33.56 16 14 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 15 C 0.01 0.66 5.47 84.65 0.46 1.12 16 16 N -0.94 -60.66 13.96 21.45 0.30 -60.36 16 17 Si 0.96 43.85 27.47 68.60 1.88 45.74 16 18 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 21 C -0.06 -1.27 3.87 -19.86 -0.08 -1.35 16 22 C -0.11 -2.22 8.60 22.26 0.19 -2.02 16 23 C -0.12 -2.49 9.83 22.29 0.22 -2.27 16 24 C -0.05 -1.21 6.32 22.32 0.14 -1.07 16 25 Cl -0.08 -1.80 28.96 -2.72 -0.08 -1.88 16 26 C -0.12 -3.00 9.83 22.29 0.22 -2.78 16 27 C -0.09 -2.15 6.96 22.27 0.16 -1.99 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.69 6.40 -2.39 -0.02 0.68 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.90 6.44 -2.39 -0.02 0.89 16 32 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.05 0.82 6.25 -2.39 -0.01 0.80 16 34 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.06 0.98 5.66 -2.38 -0.01 0.96 16 36 H 0.34 7.76 6.05 -89.69 -0.54 7.22 16 37 H 0.07 1.86 7.91 -2.39 -0.02 1.84 16 38 H 0.07 1.28 7.58 -2.38 -0.02 1.27 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.01 0.45 7.20 -2.39 -0.02 0.44 16 42 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 43 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 44 H 0.15 2.36 8.04 -2.91 -0.02 2.34 16 45 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 46 H 0.14 2.96 8.06 -2.90 -0.02 2.93 16 47 H 0.13 3.01 6.42 -2.91 -0.02 2.99 16 Total: -1.00 -72.72 381.88 2.51 -70.21 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.36 Total: 19.38 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 4.35 Total: -33.17 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -2.48 Total: -80.44 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.53 Total: -19.84 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.74 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.88 kcal Total: -72.72 2.51 -70.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339070907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.922 kcal (2) G-P(sol) polarization free energy of solvation -72.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds