Wall clock time and date at job start Tue Mar 31 2020 13:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47164 * 2 1 4 4 H 1.08994 * 109.47171 * 54.99743 * 3 2 1 5 5 C 1.53005 * 109.46975 * 294.99891 * 3 2 1 6 6 C 1.53000 * 109.47349 * 174.99927 * 3 2 1 7 7 H 1.08994 * 109.47081 * 179.97438 * 6 3 2 8 8 N 1.46898 * 109.47140 * 300.00081 * 6 3 2 9 9 C 1.46906 * 110.99888 * 275.00023 * 8 6 3 10 10 C 1.52993 * 109.47378 * 180.02562 * 9 8 6 11 11 O 1.42903 * 109.47204 * 64.99537 * 10 9 8 12 12 C 1.42903 * 113.99770 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.46830 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99830 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99810 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99856 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99786 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47473 * 59.99869 * 17 15 13 19 19 H 1.48493 * 109.47225 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47052 * 300.00145 * 17 15 13 21 21 C 1.50696 * 109.46951 * 59.99852 * 6 3 2 22 22 C 1.38241 * 119.99074 * 279.72470 * 21 6 3 23 23 C 1.38216 * 120.01485 * 179.72850 * 22 21 6 24 24 C 1.38342 * 119.98559 * 0.54598 * 23 22 21 25 25 Cl 1.73605 * 120.01282 * 179.70606 * 24 23 22 26 26 C 1.38354 * 119.97652 * 359.73144 * 24 23 22 27 27 C 1.38211 * 119.98430 * 359.97438 * 26 24 23 28 28 H 1.09002 * 109.47478 * 60.00506 * 1 2 3 29 29 H 1.09005 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47415 * 299.99994 * 1 2 3 31 31 H 1.09000 * 109.47415 * 240.00006 * 2 1 3 32 32 H 1.09002 * 109.47478 * 119.99494 * 2 1 3 33 33 H 1.09003 * 109.47087 * 300.00148 * 5 3 2 34 34 H 1.09003 * 109.46716 * 59.99937 * 5 3 2 35 35 H 1.09000 * 109.47056 * 179.97438 * 5 3 2 36 36 H 1.00901 * 111.00121 * 151.04609 * 8 6 3 37 37 H 1.09004 * 109.47040 * 299.99934 * 9 8 6 38 38 H 1.09000 * 109.47033 * 59.99886 * 9 8 6 39 39 H 1.08997 * 109.47645 * 185.00377 * 10 9 8 40 40 H 1.09005 * 109.46770 * 304.99958 * 10 9 8 41 41 H 1.08997 * 109.47226 * 299.99656 * 12 11 10 42 42 H 1.08996 * 109.47063 * 60.00397 * 12 11 10 43 43 H 0.97004 * 119.99704 * 179.97438 * 16 15 13 44 44 H 1.08005 * 119.99060 * 0.02562 * 22 21 6 45 45 H 1.08007 * 120.00057 * 180.27450 * 23 22 21 46 46 H 1.08000 * 120.00733 * 179.97438 * 26 24 23 47 47 H 1.08001 * 119.99145 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.9281 2.4720 0.1253 8 7 3.9534 0.7876 1.3809 9 6 3.9227 1.7358 2.5026 10 6 4.3330 1.0170 3.7894 11 8 5.6949 0.5967 3.6867 12 6 6.1801 -0.0895 4.8425 13 6 7.6184 -0.4839 4.6257 14 1 8.1123 -0.2357 3.6979 15 6 8.3035 -1.1615 5.6118 16 7 7.7021 -1.4632 6.7417 17 14 10.0861 -1.6509 5.3428 18 1 10.9039 -0.4336 5.1094 19 1 10.5903 -2.3639 6.5438 20 1 10.1809 -2.5450 4.1607 21 6 4.1656 0.6991 -1.0381 22 6 4.2062 -0.6826 -1.0271 23 6 4.7521 -1.3669 -2.0967 24 6 5.2682 -0.6683 -3.1735 25 17 5.9610 -1.5268 -4.5140 26 6 5.2326 0.7147 -3.1815 27 6 4.6810 1.3977 -2.1140 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.0698 1.5874 -2.1492 34 1 0.5488 2.1252 -1.3969 35 1 1.9981 3.1543 -1.3072 36 1 4.8615 0.3559 1.2971 37 1 4.6166 2.5533 2.3065 38 1 2.9143 2.1341 2.6142 39 1 4.2250 1.6960 4.6352 40 1 3.6943 0.1464 3.9386 41 1 6.1105 0.5663 5.7104 42 1 5.5797 -0.9831 5.0132 43 1 8.1841 -1.9403 7.4353 44 1 3.8069 -1.2278 -0.1845 45 1 4.7797 -2.4466 -2.0898 46 1 5.6358 1.2606 -4.0217 47 1 4.6527 2.4773 -2.1204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339070909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:49 Heat of formation + Delta-G solvation = -67.102666 kcal Electronic energy + Delta-G solvation = -25487.783763 eV Core-core repulsion = 21887.751315 eV Total energy + Delta-G solvation = -3600.032448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.03499 -38.93782 -38.20872 -37.15319 -35.50738 -34.74511 -32.55559 -32.04520 -30.29186 -30.04995 -28.59906 -26.06259 -24.74988 -24.51506 -23.73187 -22.58567 -22.32784 -20.22008 -18.65470 -17.98581 -17.52852 -16.95964 -16.82646 -16.59868 -16.26979 -15.92610 -15.70269 -15.48184 -15.13537 -14.80630 -14.50567 -14.39216 -14.21836 -14.02331 -13.77143 -13.30770 -13.15403 -13.00405 -12.83086 -12.75306 -12.66147 -12.57506 -12.42595 -12.38378 -12.30449 -12.17972 -11.77929 -11.72751 -11.53582 -11.29735 -11.26851 -11.15496 -10.86169 -10.21646 -9.93440 -9.50228 -9.31370 -8.31942 -6.44148 0.16272 0.36605 1.17166 1.39708 1.43961 1.52349 2.34332 2.65703 3.02152 3.16144 3.25359 3.63976 3.87613 3.98549 4.05485 4.13255 4.25699 4.32156 4.38449 4.43446 4.46371 4.56965 4.66932 4.69404 4.72725 4.75643 4.81847 4.83925 4.91647 4.97220 4.98440 5.04987 5.18425 5.19459 5.24221 5.25367 5.29471 5.31919 5.41653 5.54472 5.55479 5.60999 5.69499 5.86487 5.96448 6.15848 6.40574 6.54266 6.82657 7.27881 8.80151 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009185 B = 0.003344 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.554021 B = 8371.845037 C =10630.802155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.069 4.069 4 H 0.072 0.928 5 C -0.146 4.146 6 C 0.131 3.869 7 H 0.058 0.942 8 N -0.682 5.682 9 C 0.078 3.922 10 C 0.055 3.945 11 O -0.408 6.408 12 C 0.214 3.786 13 C -0.548 4.548 14 H 0.061 0.939 15 C 0.008 3.992 16 N -0.930 5.930 17 Si 0.980 3.020 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.266 1.266 21 C -0.079 4.079 22 C -0.092 4.092 23 C -0.122 4.122 24 C -0.046 4.046 25 Cl -0.077 7.077 26 C -0.115 4.115 27 C -0.101 4.101 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.344 0.656 37 H 0.033 0.967 38 H 0.105 0.895 39 H 0.046 0.954 40 H 0.043 0.957 41 H -0.016 1.016 42 H -0.016 1.016 43 H 0.271 0.729 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.148 0.852 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.625 6.431 -20.964 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.088 4.088 4 H 0.091 0.909 5 C -0.203 4.203 6 C 0.022 3.978 7 H 0.076 0.924 8 N -0.314 5.314 9 C -0.051 4.051 10 C -0.022 4.022 11 O -0.328 6.328 12 C 0.139 3.861 13 C -0.585 4.585 14 H 0.080 0.920 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.803 3.197 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.191 1.191 21 C -0.080 4.080 22 C -0.111 4.111 23 C -0.141 4.141 24 C -0.072 4.072 25 Cl -0.049 7.049 26 C -0.134 4.134 27 C -0.119 4.119 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.163 0.837 37 H 0.051 0.949 38 H 0.123 0.877 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.079 0.921 44 H 0.153 0.847 45 H 0.155 0.845 46 H 0.166 0.834 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.062 6.067 -20.931 25.407 hybrid contribution 1.490 -0.166 0.378 1.546 sum -11.572 5.901 -20.553 24.314 Atomic orbital electron populations 1.21809 0.95830 1.01356 1.01717 1.21548 0.95412 0.96323 1.01831 1.21052 0.92243 0.96945 0.98592 0.90927 1.21883 1.01757 1.00245 0.96427 1.20574 0.95945 0.95232 0.86025 0.92441 1.60594 1.35547 1.32145 1.03080 1.21932 1.01192 0.93015 0.88958 1.22593 0.83636 0.98016 0.97976 1.87754 1.27022 1.76456 1.41547 1.19748 0.93861 0.89426 0.83106 1.21358 0.96872 1.37607 1.02695 0.92037 1.25921 1.03912 0.95032 0.94191 1.70061 1.39344 1.40685 1.06882 0.85283 0.77642 0.78776 0.78025 1.19027 1.20013 1.19091 1.20039 0.97973 0.93886 0.96081 1.21152 0.97893 0.94209 0.97823 1.21219 0.98961 1.01036 0.92861 1.21075 1.02100 0.93133 0.90926 1.98362 1.83337 1.77472 1.45701 1.21206 1.00269 0.91782 1.00100 1.21205 0.97216 1.00994 0.92497 0.92191 0.93214 0.92991 0.92565 0.92052 0.92912 0.91698 0.92129 0.83747 0.94863 0.87744 0.93605 0.93838 0.99849 0.99803 0.92063 0.84703 0.84548 0.83429 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.67 71.98 0.70 -1.77 16 2 C -0.11 -2.17 4.06 30.59 0.12 -2.05 16 3 C -0.07 -1.21 2.30 -10.79 -0.02 -1.24 16 4 H 0.07 1.28 7.45 -2.39 -0.02 1.26 16 5 C -0.15 -2.08 8.54 71.98 0.61 -1.46 16 6 C 0.13 2.68 2.12 44.17 0.09 2.77 16 7 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 8 N -0.68 -17.86 4.84 -495.46 -2.40 -20.26 16 9 C 0.08 2.11 5.90 86.30 0.51 2.62 16 10 C 0.05 1.97 6.28 71.98 0.45 2.43 16 11 O -0.41 -19.38 9.85 -148.98 -1.47 -20.85 16 12 C 0.21 11.98 5.69 71.24 0.41 12.39 16 13 C -0.55 -32.58 9.43 25.60 0.24 -32.34 16 14 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 15 C 0.01 0.47 5.46 84.66 0.46 0.93 16 16 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 17 Si 0.98 44.47 29.54 68.60 2.03 46.50 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 C -0.08 -1.63 3.56 -19.86 -0.07 -1.70 16 22 C -0.09 -2.08 6.86 22.27 0.15 -1.93 16 23 C -0.12 -2.68 9.83 22.29 0.22 -2.46 16 24 C -0.05 -0.96 6.32 22.32 0.14 -0.82 16 25 Cl -0.08 -1.55 28.96 -2.72 -0.08 -1.63 16 26 C -0.12 -2.11 9.83 22.29 0.22 -1.90 16 27 C -0.10 -1.81 8.70 22.27 0.19 -1.61 16 28 H 0.06 0.87 6.57 -2.39 -0.02 0.85 16 29 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.12 6.04 -2.39 -0.01 1.10 16 32 H 0.06 1.42 7.32 -2.39 -0.02 1.40 16 33 H 0.05 0.81 6.64 -2.39 -0.02 0.80 16 34 H 0.06 0.84 6.57 -2.39 -0.02 0.83 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 36 H 0.34 10.83 7.54 -89.69 -0.68 10.16 16 37 H 0.03 0.92 8.06 -2.38 -0.02 0.90 16 38 H 0.10 2.25 7.44 -2.39 -0.02 2.23 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 41 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 43 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.14 3.22 6.85 -2.91 -0.02 3.20 16 45 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 46 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 47 H 0.15 2.01 8.04 -2.91 -0.02 1.99 16 Total: -1.00 -64.18 387.73 3.07 -61.11 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.27 Total: 19.11 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 4.43 Total: -28.14 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -2.11 Total: -76.10 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -1.47 Total: -20.85 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -64.18 3.07 -61.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339070909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.990 kcal (2) G-P(sol) polarization free energy of solvation -64.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds