Wall clock time and date at job start Tue Mar 31 2020 14:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47522 * 2 1 4 4 C 1.50701 * 109.46885 * 120.00517 * 2 1 3 5 5 O 1.21279 * 120.00171 * 119.99766 * 4 2 1 6 6 N 1.34780 * 119.99965 * 299.98904 * 4 2 1 7 7 C 1.46496 * 120.00146 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47460 * 180.02562 * 7 6 4 9 9 C 1.53005 * 109.46575 * 300.00111 * 8 7 6 10 10 C 1.52998 * 109.47127 * 59.99341 * 8 7 6 11 11 C 1.52999 * 109.47366 * 180.02562 * 8 7 6 12 12 C 1.50703 * 109.46904 * 180.02562 * 11 8 7 13 13 H 1.07997 * 120.00155 * 359.97438 * 12 11 8 14 14 C 1.37879 * 119.99714 * 180.02562 * 12 11 8 15 15 N 1.31509 * 119.99965 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00012 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47430 * 90.00256 * 16 14 12 18 18 H 1.48505 * 109.47079 * 210.00304 * 16 14 12 19 19 H 1.48507 * 109.47350 * 330.00050 * 16 14 12 20 20 C 1.50698 * 109.46731 * 239.99967 * 2 1 3 21 21 C 1.38415 * 120.02708 * 120.00218 * 20 2 1 22 22 F 1.35099 * 120.00946 * 359.97438 * 21 20 2 23 23 C 1.38474 * 119.97981 * 179.97438 * 21 20 2 24 24 C 1.38210 * 120.02023 * 0.28104 * 23 21 20 25 25 C 1.38201 * 120.05118 * 359.44081 * 24 23 21 26 26 C 1.38420 * 120.02535 * 299.97725 * 20 2 1 27 27 F 1.35097 * 120.01373 * 0.02562 * 26 20 2 28 28 H 1.08996 * 109.47066 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46438 * 299.99798 * 1 2 3 30 30 H 1.08994 * 109.47149 * 59.99392 * 1 2 3 31 31 H 0.96998 * 120.00095 * 0.02562 * 6 4 2 32 32 H 1.09004 * 109.46784 * 300.00542 * 7 6 4 33 33 H 1.09000 * 109.47080 * 60.00168 * 7 6 4 34 34 H 1.08994 * 109.47327 * 59.99694 * 9 8 7 35 35 H 1.09001 * 109.47008 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.46901 * 299.99869 * 9 8 7 37 37 H 1.09010 * 109.47075 * 60.00668 * 10 8 7 38 38 H 1.09006 * 109.47328 * 180.02562 * 10 8 7 39 39 H 1.08994 * 109.47396 * 300.00686 * 10 8 7 40 40 H 1.09004 * 109.46671 * 299.99726 * 11 8 7 41 41 H 1.09000 * 109.47288 * 59.99409 * 11 8 7 42 42 H 0.97002 * 119.99936 * 179.97438 * 15 14 12 43 43 H 1.08002 * 119.98641 * 179.97438 * 23 21 20 44 44 H 1.08000 * 119.96986 * 179.70463 * 24 23 21 45 45 H 1.08002 * 119.98829 * 180.25980 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7069 -0.2500 2.4546 7 6 2.1956 -0.9404 3.6507 8 6 1.6851 -0.2195 4.9000 9 6 2.1943 1.2233 4.9000 10 6 0.1552 -0.2203 4.8999 11 6 2.1961 -0.9402 6.1492 12 6 1.6928 -0.2305 7.3797 13 1 1.0710 0.6470 7.2806 14 6 2.0269 -0.7008 8.6320 15 7 1.5881 -0.0813 9.7058 16 14 3.1028 -2.2182 8.8033 17 1 4.5300 -1.8106 8.8481 18 1 2.7529 -2.9342 10.0563 19 1 2.8808 -3.1162 7.6415 20 6 2.0323 -0.7104 -1.2305 21 6 2.8281 -0.0383 -2.1420 22 9 3.1546 1.2552 -1.9292 23 6 3.2895 -0.6922 -3.2720 24 6 2.9508 -2.0139 -3.4929 25 6 2.1610 -2.6877 -2.5806 26 6 1.6985 -2.0358 -1.4498 27 9 0.9219 -2.6930 -0.5610 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.1490 0.5385 2.5436 32 1 1.8325 -1.9682 3.6508 33 1 3.2856 -0.9401 3.6505 34 1 1.8308 1.7369 4.0101 35 1 1.8311 1.7368 5.7902 36 1 3.2843 1.2239 4.9000 37 1 -0.2077 -1.2483 4.8999 38 1 -0.2085 0.2936 5.7898 39 1 -0.2084 0.2933 4.0100 40 1 1.8336 -1.9682 6.1493 41 1 3.2861 -0.9392 6.1490 42 1 1.8229 -0.4124 10.5868 43 1 3.9101 -0.1678 -3.9836 44 1 3.3072 -2.5217 -4.3769 45 1 1.9005 -3.7216 -2.7521 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345968065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:59 Heat of formation + Delta-G solvation = -120.080080 kcal Electronic energy + Delta-G solvation = -28065.244090 eV Core-core repulsion = 23911.117689 eV Total energy + Delta-G solvation = -4154.126402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.31386 -49.12473 -40.15097 -38.86686 -37.24385 -34.54059 -33.61053 -32.08333 -30.57746 -29.86811 -27.83088 -26.56728 -26.41529 -24.89762 -23.16693 -22.94874 -21.87994 -20.08271 -18.51411 -18.29363 -17.72540 -17.00813 -16.64779 -16.37004 -16.01302 -15.80201 -15.48036 -15.45580 -15.18582 -14.65921 -14.30246 -14.13805 -13.82326 -13.72868 -13.42618 -13.03059 -12.91045 -12.72679 -12.59463 -12.40487 -12.27174 -12.22456 -12.18772 -11.75968 -11.24947 -11.21111 -11.11729 -11.00939 -10.62246 -10.49395 -9.97733 -9.90439 -9.74243 -9.48287 -9.15043 -9.00259 -8.99380 -8.81327 -8.53757 -6.04546 -4.01768 0.65020 0.71641 2.71374 2.99029 3.31557 3.38536 3.39904 3.43876 3.62968 4.01488 4.13578 4.33505 4.45611 4.46210 4.76229 4.81728 4.86225 4.97613 5.28133 5.30115 5.40094 5.44645 5.47409 5.52462 5.60050 5.63288 5.66460 5.72553 5.83329 5.88673 6.10150 6.11386 6.18121 6.30969 6.46420 6.47241 6.58842 6.68288 6.89531 7.00906 7.04430 7.19806 7.36319 7.63040 7.79037 8.32273 8.52622 8.99468 9.58268 11.08189 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.023193 B = 0.002735 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.989055 B =10233.343361 C =10534.524212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 H 0.112 0.888 4 C 0.515 3.485 5 O -0.536 6.536 6 N -0.717 5.717 7 C 0.126 3.874 8 C -0.063 4.063 9 C -0.129 4.129 10 C -0.128 4.128 11 C -0.002 4.002 12 C -0.511 4.511 13 H 0.078 0.922 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.875 3.125 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.265 1.265 20 C -0.138 4.138 21 C 0.134 3.866 22 F -0.130 7.130 23 C -0.169 4.169 24 C -0.062 4.062 25 C -0.169 4.169 26 C 0.164 3.836 27 F -0.120 7.120 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.399 0.601 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.018 0.982 41 H 0.013 0.987 42 H 0.262 0.738 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 0.011 -28.209 28.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 H 0.130 0.870 4 C 0.300 3.700 5 O -0.413 6.413 6 N -0.368 5.368 7 C 0.004 3.996 8 C -0.063 4.063 9 C -0.186 4.186 10 C -0.186 4.186 11 C -0.040 4.040 12 C -0.548 4.548 13 H 0.096 0.904 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.702 3.298 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.140 4.140 21 C 0.115 3.885 22 F -0.108 7.108 23 C -0.188 4.188 24 C -0.080 4.080 25 C -0.188 4.188 26 C 0.144 3.856 27 F -0.098 7.098 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.235 0.765 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.036 0.964 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.467 -0.688 -28.013 28.026 hybrid contribution 0.372 -0.295 0.580 0.749 sum -0.096 -0.983 -27.433 27.451 Atomic orbital electron populations 1.21866 0.91340 1.03975 1.03273 1.20186 0.98368 1.00739 0.90204 0.86983 1.20198 0.80619 0.84718 0.84473 1.90705 1.37840 1.26066 1.86684 1.46082 1.53193 1.32028 1.05543 1.21650 0.98853 0.96078 0.83058 1.20692 0.95869 0.95877 0.93888 1.21781 1.00464 0.95610 1.00774 1.21771 0.94748 1.01283 1.00751 1.19591 0.95899 0.95875 0.92608 1.21075 1.31831 1.13339 0.88603 0.90383 1.24995 0.95753 0.96693 0.95986 1.69899 1.45959 1.40563 0.97882 0.86862 0.81189 0.84085 0.77655 1.20379 1.21497 1.18993 1.19372 1.02692 0.94227 0.97723 1.17152 0.97113 0.79089 0.95157 1.91512 1.90739 1.33854 1.94743 1.21132 1.03840 0.96091 0.97737 1.20825 0.95370 0.93195 0.98636 1.21213 1.01566 1.01636 0.94348 1.17091 0.91826 0.89022 0.87614 1.91530 1.71320 1.80236 1.66747 0.91019 0.90966 0.91202 0.76485 0.91770 0.91853 0.95030 0.90830 0.93411 0.93374 0.90849 0.95037 0.96364 0.96833 0.92793 0.84026 0.83972 0.84016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.88 37.16 0.33 -1.03 16 2 C -0.07 -0.83 2.79 -92.92 -0.26 -1.09 16 3 H 0.11 1.12 7.13 -51.93 -0.37 0.75 16 4 C 0.52 7.63 6.60 -10.98 -0.07 7.55 16 5 O -0.54 -9.91 14.56 5.56 0.08 -9.83 16 6 N -0.72 -10.14 4.85 -60.29 -0.29 -10.43 16 7 C 0.13 2.15 4.56 -4.04 -0.02 2.13 16 8 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 9 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 10 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 11 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 12 C -0.51 -13.66 8.20 -34.44 -0.28 -13.95 16 13 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 14 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 15 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 16 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 20 C -0.14 -1.60 4.41 -104.49 -0.46 -2.07 16 21 C 0.13 1.40 7.25 -39.43 -0.29 1.11 16 22 F -0.13 -1.39 16.19 2.25 0.04 -1.35 16 23 C -0.17 -1.35 10.03 -39.50 -0.40 -1.75 16 24 C -0.06 -0.44 10.04 -39.61 -0.40 -0.84 16 25 C -0.17 -1.51 10.02 -39.51 -0.40 -1.91 16 26 C 0.16 1.94 6.13 -39.43 -0.24 1.69 16 27 F -0.12 -1.64 13.81 2.25 0.03 -1.60 16 28 H 0.07 0.74 6.31 -51.93 -0.33 0.41 16 29 H 0.07 0.58 7.56 -51.93 -0.39 0.19 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.40 4.75 5.58 -40.82 -0.23 4.52 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 35 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 38 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 39 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 40 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 41 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -32.26 363.13 -7.06 -39.32 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.35 Total: 1.50 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -2.15 Total: -13.54 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.48 Total: -36.92 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.07 Total: -2.96 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.26 -7.06 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345968065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.756 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds