Wall clock time and date at job start Tue Mar 31 2020 14:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.46925 * 2 1 4 4 H 1.09002 * 109.47265 * 55.00230 * 3 2 1 5 5 C 1.50700 * 109.47030 * 174.99865 * 3 2 1 6 6 H 1.08005 * 120.00024 * 120.00266 * 5 3 2 7 7 C 1.37878 * 120.00274 * 300.00021 * 5 3 2 8 8 N 1.31519 * 119.99637 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00291 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46757 * 60.00041 * 9 7 5 11 11 H 1.48497 * 109.47051 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47161 * 300.00071 * 9 7 5 13 13 N 1.46498 * 109.47208 * 294.99824 * 3 2 1 14 14 C 1.34784 * 119.99877 * 84.99932 * 13 3 2 15 15 O 1.21583 * 119.99663 * 0.02562 * 14 13 3 16 16 N 1.34772 * 119.99743 * 180.02562 * 14 13 3 17 17 C 1.39565 * 119.99612 * 185.30386 * 16 14 13 18 18 C 1.39506 * 120.81835 * 32.56293 * 17 16 14 19 19 C 1.37984 * 119.28528 * 180.02562 * 18 17 16 20 20 N 1.31857 * 120.97449 * 0.02562 * 19 18 17 21 21 C 1.32755 * 121.77939 * 0.02562 * 20 19 18 22 22 C 1.48361 * 119.69171 * 179.72427 * 21 20 19 23 23 C 1.39352 * 120.12029 * 179.71764 * 22 21 20 24 24 C 1.38019 * 119.87412 * 179.74422 * 23 22 21 25 25 C 1.38324 * 120.11973 * 0.53873 * 24 23 22 26 26 C 1.38321 * 120.24912 * 359.73523 * 25 24 23 27 27 C 1.38016 * 120.12138 * 359.97438 * 26 25 24 28 28 C 1.39093 * 120.61438 * 359.97438 * 21 20 19 29 29 H 1.08997 * 109.47566 * 300.00082 * 1 2 3 30 30 H 1.09000 * 109.47496 * 60.00210 * 1 2 3 31 31 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47217 * 240.00334 * 2 1 3 33 33 H 1.09000 * 109.47496 * 119.99790 * 2 1 3 34 34 H 0.96999 * 120.00014 * 179.97438 * 8 7 5 35 35 H 0.96992 * 119.99929 * 265.00317 * 13 3 2 36 36 H 0.96995 * 120.00566 * 5.30114 * 16 14 13 37 37 H 1.08006 * 120.35672 * 0.04234 * 18 17 16 38 38 H 1.08008 * 119.51633 * 180.02562 * 19 18 17 39 39 H 1.07990 * 120.06101 * 0.02603 * 23 22 21 40 40 H 1.08001 * 119.93811 * 180.29711 * 24 23 22 41 41 H 1.08007 * 119.87380 * 179.72012 * 25 24 23 42 42 H 1.08007 * 119.94001 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.06083 * 180.02562 * 27 26 25 44 44 H 1.07992 * 120.50745 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0049 0.8801 1.3812 10 1 6.5003 2.2801 1.3808 11 1 6.3977 0.2169 2.6504 12 1 6.5966 0.1454 0.2344 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3413 2.6326 -0.4318 16 7 0.0783 3.2665 -2.5188 17 6 -1.1362 3.9490 -2.6023 18 6 -1.6656 4.6046 -1.4905 19 6 -2.8691 5.2692 -1.6086 20 7 -3.5223 5.2919 -2.7537 21 6 -3.0566 4.6812 -3.8365 22 6 -3.8330 4.7313 -5.0998 23 6 -3.3496 4.0984 -6.2433 24 6 -4.0786 4.1438 -7.4144 25 6 -5.2815 4.8254 -7.4572 26 6 -5.7633 5.4602 -6.3267 27 6 -5.0455 5.4163 -5.1487 28 6 -1.8500 3.9904 -3.7963 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8291 -0.0609 2.9500 35 1 2.2718 2.1232 -1.9977 36 1 0.6656 3.2256 -3.2896 37 1 -1.1390 4.5923 -0.5476 38 1 -3.2822 5.7784 -0.7503 39 1 -2.4085 3.5695 -6.2120 40 1 -3.7072 3.6496 -8.2999 41 1 -5.8465 4.8622 -8.3769 42 1 -6.7029 5.9913 -6.3658 43 1 -5.4228 5.9119 -4.2664 44 1 -1.4729 3.4938 -4.6781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354782847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:22 Heat of formation + Delta-G solvation = 12.558691 kcal Electronic energy + Delta-G solvation = -26177.464044 eV Core-core repulsion = 22479.778478 eV Total energy + Delta-G solvation = -3697.685567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96576 -40.79630 -39.50391 -37.43422 -36.05507 -34.41130 -33.70879 -33.01303 -31.96795 -31.21768 -30.21411 -28.84984 -25.45106 -25.10964 -24.53952 -23.06188 -22.83216 -21.74247 -21.37808 -19.94138 -19.12178 -18.05817 -17.56490 -17.23776 -17.10400 -16.93337 -16.24077 -16.17656 -15.75077 -15.37216 -15.20394 -15.05587 -14.91432 -14.56506 -14.44607 -14.19269 -14.12226 -13.59037 -13.50234 -13.18160 -12.98815 -12.89604 -12.66272 -12.20814 -12.17700 -12.07987 -11.99788 -11.90212 -11.57898 -11.29444 -11.06498 -10.70247 -10.53758 -10.49017 -9.87399 -9.81707 -9.48091 -9.17699 -8.16101 -6.33169 -0.38240 0.18039 0.54155 0.85889 1.45626 1.47260 1.54570 1.64826 2.16423 2.42014 2.71551 3.13425 3.13742 3.18730 3.35013 3.68135 3.94319 4.07963 4.13318 4.18583 4.27685 4.39684 4.48863 4.56059 4.56207 4.67250 4.68933 4.74527 4.80886 5.01335 5.05007 5.07153 5.20599 5.24452 5.31535 5.42698 5.51241 5.57686 5.59718 5.63426 5.67351 5.71830 5.79272 5.85106 6.10065 6.15462 6.20345 6.74128 6.97719 7.17288 7.34635 7.63584 8.89044 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026771 B = 0.002291 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.653110 B =12220.958581 C =12475.520609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.711 5.711 14 C 0.694 3.306 15 O -0.607 6.607 16 N -0.673 5.673 17 C 0.216 3.784 18 C -0.196 4.196 19 C 0.121 3.879 20 N -0.510 5.510 21 C 0.173 3.827 22 C -0.069 4.069 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.111 4.111 26 C -0.132 4.132 27 C -0.097 4.097 28 C -0.193 4.193 29 H 0.025 0.975 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.265 0.735 35 H 0.403 0.597 36 H 0.424 0.576 37 H 0.128 0.872 38 H 0.180 0.820 39 H 0.141 0.859 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.125 0.875 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.337 8.255 -20.293 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.363 5.363 14 C 0.394 3.606 15 O -0.486 6.486 16 N -0.322 5.322 17 C 0.111 3.889 18 C -0.219 4.219 19 C -0.036 4.036 20 N -0.221 5.221 21 C 0.037 3.963 22 C -0.070 4.070 23 C -0.126 4.126 24 C -0.144 4.144 25 C -0.129 4.129 26 C -0.149 4.149 27 C -0.116 4.116 28 C -0.216 4.216 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.263 0.737 37 H 0.146 0.854 38 H 0.197 0.803 39 H 0.159 0.841 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.161 0.839 43 H 0.143 0.857 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.672 8.515 -19.232 25.086 hybrid contribution 2.314 -0.580 0.410 2.420 sum -11.358 7.935 -18.821 23.371 Atomic orbital electron populations 1.21639 0.97126 0.98893 1.00110 1.21812 0.93544 0.99299 1.01405 1.18297 0.93504 0.88805 0.80090 0.98057 1.21516 0.91247 1.39077 1.06762 0.90900 1.25741 1.03183 0.94409 0.95044 1.70038 1.37098 1.38193 1.09827 0.85435 0.79214 0.78384 0.77516 1.19756 1.21368 1.18909 1.45461 1.13583 1.58649 1.18623 1.16148 0.83089 0.78619 0.82730 1.90910 1.52570 1.65330 1.39756 1.42470 1.20182 1.54900 1.14682 1.17814 0.86071 0.90406 0.94638 1.22250 0.99777 0.99871 1.00027 1.22834 0.90493 0.94865 0.95435 1.67649 1.34643 1.20463 0.99381 1.19846 0.91278 0.92733 0.92409 1.18626 0.95696 1.01470 0.91164 1.21489 1.00702 0.98427 0.91951 1.21430 0.95193 0.99622 0.98174 1.21662 0.96149 0.95984 0.99104 1.21432 1.00732 1.00294 0.92491 1.21412 0.93749 0.97445 0.98963 1.21924 0.95872 1.05030 0.98764 0.95530 0.94146 0.93880 0.93957 0.90871 0.92575 0.76166 0.73667 0.85414 0.80347 0.84133 0.83120 0.83265 0.83851 0.85675 0.81665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.51 71.98 0.61 -4.77 16 2 C -0.12 -5.83 5.45 30.59 0.17 -5.66 16 3 C 0.30 14.62 2.24 44.25 0.10 14.72 16 4 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 5 C -0.55 -27.87 8.73 25.60 0.22 -27.65 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -51.10 11.29 21.45 0.24 -50.85 16 9 Si 0.97 41.00 29.54 68.60 2.03 43.02 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 11 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 12 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 13 N -0.71 -27.58 5.03 -461.40 -2.32 -29.89 16 14 C 0.69 26.29 6.90 179.05 1.23 27.52 16 15 O -0.61 -27.86 11.17 -3.98 -0.04 -27.91 16 16 N -0.67 -18.80 5.35 -316.76 -1.70 -20.50 16 17 C 0.22 6.20 6.33 38.44 0.24 6.44 16 18 C -0.20 -6.19 8.73 22.52 0.20 -5.99 16 19 C 0.12 3.34 11.16 84.63 0.94 4.29 16 20 N -0.51 -14.33 9.43 -185.09 -1.75 -16.07 16 21 C 0.17 4.48 6.73 41.91 0.28 4.76 16 22 C -0.07 -1.51 5.88 -20.05 -0.12 -1.63 16 23 C -0.11 -1.79 9.42 22.49 0.21 -1.58 16 24 C -0.13 -1.65 10.03 22.24 0.22 -1.43 16 25 C -0.11 -1.39 10.04 22.31 0.22 -1.17 16 26 C -0.13 -2.01 10.03 22.24 0.22 -1.78 16 27 C -0.10 -1.99 9.57 22.48 0.22 -1.78 16 28 C -0.19 -4.61 9.40 22.70 0.21 -4.39 16 29 H 0.03 1.28 7.84 -2.39 -0.02 1.26 16 30 H 0.04 1.76 5.65 -2.39 -0.01 1.74 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.07 3.95 5.95 -2.39 -0.01 3.93 16 34 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 35 H 0.40 12.82 8.56 -92.71 -0.79 12.03 16 36 H 0.42 8.33 8.84 -92.71 -0.82 7.51 16 37 H 0.13 4.63 6.46 -2.91 -0.02 4.61 16 38 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16 39 H 0.14 1.81 6.18 -2.92 -0.02 1.79 16 40 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 41 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 43 H 0.13 2.71 7.53 -2.91 -0.02 2.69 16 44 H 0.17 2.80 6.19 -2.91 -0.02 2.78 16 Total: -1.00 -68.21 362.92 1.55 -66.66 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.56 Total: 34.33 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 5.64 Total: 1.23 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -5.52 Total: -117.32 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.04 Total: -27.91 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Total: -68.21 1.55 -66.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354782847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.215 kcal (2) G-P(sol) polarization free energy of solvation -68.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds