Wall clock time and date at job start Tue Mar 31 2020 14:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31513 * 119.99969 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99840 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47167 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47028 * 210.00109 * 9 7 5 12 12 H 1.48497 * 109.47377 * 330.00144 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 S 1.80993 * 109.47222 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00057 * 179.97438 * 17 16 14 19 19 N 1.31262 * 125.80286 * 0.02599 * 18 17 16 20 20 C 1.34364 * 109.30789 * 179.97438 * 19 18 17 21 21 C 1.34392 * 108.34381 * 0.02562 * 20 19 18 22 22 N 1.36115 * 125.80089 * 179.71593 * 18 17 16 23 23 C 1.46500 * 126.50329 * 0.02562 * 22 18 17 24 24 C 1.52996 * 109.47077 * 180.02562 * 23 22 18 25 25 C 1.52995 * 109.47280 * 300.00335 * 23 22 18 26 26 C 1.53001 * 109.46973 * 60.00213 * 23 22 18 27 27 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 29 29 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 30 30 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 31 31 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 32 32 H 0.96999 * 119.99716 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 34 34 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 35 35 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 36 36 H 1.07994 * 125.83032 * 179.97438 * 20 19 18 37 37 H 1.07995 * 126.52053 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47030 * 60.00022 * 24 23 22 39 39 H 1.09002 * 109.47098 * 180.02562 * 24 23 22 40 40 H 1.09003 * 109.46896 * 300.00023 * 24 23 22 41 41 H 1.08994 * 109.47515 * 59.99628 * 25 23 22 42 42 H 1.09002 * 109.47247 * 180.02562 * 25 23 22 43 43 H 1.09010 * 109.46934 * 299.99906 * 25 23 22 44 44 H 1.09003 * 109.47384 * 59.99742 * 26 23 22 45 45 H 1.09002 * 109.46985 * 179.97438 * 26 23 22 46 46 H 1.09001 * 109.46991 * 300.00080 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8806 1.3364 9 14 3.0963 0.1102 2.5707 10 1 2.8744 -1.3258 2.2647 11 1 3.7941 0.2362 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 16 -1.6423 3.9958 -2.4970 18 6 -1.8434 4.7081 -4.0960 19 7 -0.9499 4.7015 -5.0575 20 6 -1.4487 5.3354 -6.1320 21 6 -2.6916 5.7533 -5.8374 22 7 -2.9540 5.3537 -4.5462 23 6 -4.1921 5.5833 -3.7975 24 6 -5.1853 6.3465 -4.6761 25 6 -4.7994 4.2390 -3.3914 26 6 -3.8848 6.4038 -2.5432 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 5.8769 0.4828 2.1133 33 1 2.2720 2.1231 -1.9978 34 1 0.7280 4.1540 -2.8668 35 1 0.0680 2.6143 -3.4687 36 1 -0.9378 5.4846 -7.0717 37 1 -3.3594 6.2947 -6.4909 38 1 -5.4041 5.7616 -5.5694 39 1 -6.1063 6.5177 -4.1189 40 1 -4.7528 7.3042 -4.9657 41 1 -4.0920 3.6949 -2.7657 42 1 -5.7208 4.4099 -2.8348 43 1 -5.0183 3.6545 -4.2851 44 1 -3.4522 7.3616 -2.8324 45 1 -4.8061 6.5751 -1.9863 46 1 -3.1774 5.8597 -1.9174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358051281.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:10 Heat of formation + Delta-G solvation = 0.243855 kcal Electronic energy + Delta-G solvation = -25634.216391 eV Core-core repulsion = 22071.440764 eV Total energy + Delta-G solvation = -3562.775627 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.91267 -40.83594 -37.98569 -37.16875 -34.43760 -33.49349 -32.11167 -31.02876 -30.58975 -29.12318 -28.41006 -28.17727 -24.62496 -23.79457 -22.72715 -22.15548 -21.43349 -21.00518 -19.12757 -18.28578 -17.72544 -17.57584 -17.03163 -16.71526 -16.43637 -15.99614 -15.51360 -15.29573 -15.00020 -14.93282 -14.74903 -14.57440 -14.54104 -14.43609 -13.90393 -13.63390 -13.38665 -13.30116 -13.29511 -13.04711 -12.92595 -12.78485 -12.76833 -12.39411 -12.29767 -12.19050 -11.85532 -11.47008 -11.39816 -11.24547 -11.04727 -10.89688 -10.83846 -10.65001 -10.28820 -9.83113 -8.38139 -8.37479 -6.44094 0.13384 0.95490 1.04163 1.27652 1.35730 1.45512 1.61352 1.87337 2.07686 2.26151 2.40902 2.97596 3.50137 3.72765 3.72969 3.83375 3.91170 4.04148 4.24101 4.32898 4.35836 4.39969 4.47375 4.51209 4.57586 4.67045 4.68492 4.74345 4.79359 4.81343 4.83313 5.01582 5.07536 5.09619 5.11895 5.20518 5.22604 5.38993 5.39208 5.52084 5.60643 5.76615 6.05446 6.11383 6.57577 6.76714 6.92676 7.16269 7.34073 8.77177 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.025209 B = 0.002813 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.430206 B = 9950.787041 C =10504.223570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.251 3.749 4 H 0.027 0.973 5 C -0.535 4.535 6 H 0.056 0.944 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.937 3.063 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.258 1.258 13 N -0.693 5.693 14 C 0.524 3.476 15 O -0.564 6.564 16 C -0.134 4.134 17 S 0.050 5.950 18 C 0.157 3.843 19 N -0.522 5.522 20 C -0.048 4.048 21 C -0.033 4.033 22 N -0.432 5.432 23 C 0.144 3.856 24 C -0.147 4.147 25 C -0.165 4.165 26 C -0.166 4.166 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.270 0.730 33 H 0.408 0.592 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.189 0.811 37 H 0.212 0.788 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.270 10.323 -14.716 30.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.177 4.177 3 C 0.147 3.853 4 H 0.045 0.955 5 C -0.573 4.573 6 H 0.074 0.926 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.764 3.236 10 H -0.185 1.185 11 H -0.221 1.221 12 H -0.182 1.182 13 N -0.342 5.342 14 C 0.309 3.691 15 O -0.445 6.445 16 C -0.286 4.286 17 S 0.279 5.721 18 C -0.214 4.214 19 N -0.245 5.245 20 C -0.197 4.197 21 C -0.168 4.168 22 N -0.118 5.118 23 C 0.062 3.938 24 C -0.205 4.205 25 C -0.223 4.223 26 C -0.224 4.224 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.243 0.757 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.206 0.794 37 H 0.228 0.772 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.121 0.879 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.731 9.856 -12.872 29.572 hybrid contribution 1.004 -0.026 -0.790 1.278 sum -23.727 9.830 -13.663 29.091 Atomic orbital electron populations 1.21768 0.95049 1.00676 1.01669 1.22217 0.95969 0.98335 1.01148 1.18838 0.93245 0.89747 0.83516 0.95526 1.21284 0.90338 1.38653 1.07012 0.92630 1.25560 0.95753 0.95857 0.99884 1.69980 1.10346 1.46119 1.30866 0.86025 0.79371 0.79987 0.78217 1.18485 1.22129 1.18205 1.45908 1.15237 1.55673 1.17385 1.19953 0.82197 0.78504 0.88457 1.90685 1.51808 1.60685 1.41282 1.23583 0.99860 1.05446 0.99661 1.85930 1.15914 1.67263 1.02954 1.25319 0.88025 1.06086 1.01922 1.70719 1.29866 1.22883 1.01056 1.22749 0.94924 1.03176 0.98898 1.23318 0.99946 1.07026 0.86540 1.46135 1.12435 1.41151 1.12033 1.21262 0.81883 0.97718 0.92983 1.22117 0.98437 1.00068 0.99858 1.22312 1.02379 0.94974 1.02639 1.22320 1.04114 0.99695 0.96253 0.92234 0.94195 0.92763 0.91303 0.93669 0.92062 0.75662 0.85784 0.85268 0.79430 0.77179 0.90785 0.88176 0.90869 0.92494 0.87922 0.91814 0.91922 0.87903 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 8.51 71.98 0.61 -4.52 16 2 C -0.14 -5.93 5.11 30.60 0.16 -5.77 16 3 C 0.25 11.79 1.83 44.25 0.08 11.87 16 4 H 0.03 1.40 6.63 -2.39 -0.02 1.38 16 5 C -0.53 -29.23 9.31 25.60 0.24 -28.99 16 6 H 0.06 3.25 7.98 -2.91 -0.02 3.22 16 7 C 0.03 1.65 5.45 84.65 0.46 2.12 16 8 N -0.93 -56.41 13.96 21.45 0.30 -56.11 16 9 Si 0.94 44.76 24.41 68.60 1.67 46.44 16 10 H -0.26 -11.64 6.83 99.48 0.68 -10.96 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 12 H -0.26 -12.13 6.53 99.48 0.65 -11.48 16 13 N -0.69 -27.05 5.02 -446.09 -2.24 -29.29 16 14 C 0.52 19.17 6.42 87.66 0.56 19.73 16 15 O -0.56 -23.72 13.00 -3.02 -0.04 -23.76 16 16 C -0.13 -3.95 5.68 71.24 0.40 -3.55 16 17 S 0.05 1.40 16.90 -56.49 -0.95 0.45 16 18 C 0.16 4.13 7.46 179.70 1.34 5.47 16 19 N -0.52 -14.70 10.60 -196.47 -2.08 -16.78 16 20 C -0.05 -1.04 11.84 83.43 0.99 -0.05 16 21 C -0.03 -0.55 10.47 82.89 0.87 0.32 16 22 N -0.43 -8.60 2.66 -479.85 -1.28 -9.87 16 23 C 0.14 2.04 1.08 3.60 0.00 2.04 16 24 C -0.15 -1.05 7.39 71.98 0.53 -0.52 16 25 C -0.17 -2.39 8.50 71.98 0.61 -1.77 16 26 C -0.17 -2.47 8.50 71.98 0.61 -1.86 16 27 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.04 1.62 7.85 -2.39 -0.02 1.60 16 29 H 0.05 2.03 5.64 -2.39 -0.01 2.02 16 30 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.05 2.03 3.22 -2.39 -0.01 2.02 16 32 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.41 14.23 8.54 -92.71 -0.79 13.44 16 34 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 35 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 36 H 0.19 3.04 8.06 -2.91 -0.02 3.01 16 37 H 0.21 1.76 7.32 -2.91 -0.02 1.74 16 38 H 0.07 0.46 7.91 -2.39 -0.02 0.44 16 39 H 0.10 0.36 8.14 -2.39 -0.02 0.35 16 40 H 0.07 0.47 7.90 -2.39 -0.02 0.45 16 41 H 0.06 1.12 5.87 -2.39 -0.01 1.10 16 42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.06 1.13 5.87 -2.39 -0.01 1.12 16 Total: -1.00 -71.17 368.95 2.96 -68.20 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.11 Total: 26.20 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 7.47 Total: -5.47 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -5.30 Total: -112.05 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.04 Total: -23.76 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.67 Total: 46.44 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -0.95 Total: 0.45 kcal Total: -71.17 2.96 -68.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358051281.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.448 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds