Wall clock time and date at job start Tue Mar 31 2020 13:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 H 1.09000 * 109.47143 * 54.99985 * 3 2 1 5 5 C 1.52996 * 109.47305 * 294.99789 * 3 2 1 6 6 C 1.50697 * 109.47286 * 174.99710 * 3 2 1 7 7 N 1.31805 * 119.03503 * 240.00168 * 6 3 2 8 8 C 1.32257 * 120.89530 * 179.97438 * 7 6 3 9 9 C 1.39271 * 119.01268 * 0.02562 * 8 7 6 10 10 N 1.39863 * 120.87430 * 179.97438 * 9 8 7 11 11 C 1.34779 * 119.99849 * 32.12787 * 10 9 8 12 12 O 1.21599 * 119.99915 * 5.20707 * 11 10 9 13 13 C 1.47595 * 119.99592 * 185.20815 * 11 10 9 14 14 C 1.40038 * 119.90122 * 359.72330 * 13 11 10 15 15 C 1.36302 * 120.10484 * 179.71913 * 14 13 11 16 16 C 1.40894 * 119.89420 * 0.55861 * 15 14 13 17 17 C 1.41092 * 120.10286 * 179.70019 * 16 15 14 18 18 H 1.08003 * 120.00129 * 204.82003 * 17 16 15 19 19 C 1.40231 * 119.99960 * 24.81102 * 17 16 15 20 20 N 1.30647 * 119.99885 * 17.35350 * 19 17 16 21 21 Si 1.86801 * 120.00106 * 197.34454 * 19 17 16 22 22 H 1.48503 * 109.46811 * 94.61530 * 21 19 17 23 23 H 1.48502 * 109.47263 * 214.61533 * 21 19 17 24 24 H 1.48505 * 109.47131 * 334.61603 * 21 19 17 25 25 C 1.40896 * 119.79514 * 359.71457 * 16 15 14 26 26 C 1.36296 * 119.89725 * 0.02562 * 25 16 15 27 27 C 1.39269 * 118.25283 * 359.97438 * 9 8 7 28 28 N 1.31803 * 119.03555 * 59.97881 * 6 3 2 29 29 H 1.09003 * 109.47220 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47556 * 300.00043 * 1 2 3 31 31 H 1.09003 * 109.47196 * 60.00231 * 1 2 3 32 32 H 1.09000 * 109.47556 * 239.99957 * 2 1 3 33 33 H 1.09003 * 109.47196 * 119.99769 * 2 1 3 34 34 H 1.09004 * 109.47220 * 59.99910 * 5 3 2 35 35 H 1.08999 * 109.47351 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47180 * 300.00173 * 5 3 2 37 37 H 1.07997 * 120.49537 * 179.72744 * 8 7 6 38 38 H 0.97002 * 119.99818 * 212.12792 * 10 9 8 39 39 H 1.08004 * 119.94379 * 0.02562 * 14 13 11 40 40 H 1.08003 * 120.05146 * 180.25286 * 15 14 13 41 41 H 0.96999 * 119.99965 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.05498 * 179.97438 * 25 16 15 43 43 H 1.07995 * 119.95154 * 179.97438 * 26 25 16 44 44 H 1.07998 * 120.49292 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5418 1.4444 0.1239 7 7 4.0980 2.0501 1.1540 8 6 5.4123 2.0739 1.2993 9 6 6.2090 1.4473 0.3442 10 7 7.6029 1.4490 0.4591 11 6 8.1785 1.4404 1.6778 12 8 7.4901 1.3356 2.6746 13 6 9.6445 1.5582 1.8022 14 6 10.4357 1.6730 0.6525 15 6 11.7894 1.7878 0.7628 16 6 12.3934 1.7790 2.0356 17 6 13.7949 1.8912 2.1546 18 1 14.2960 1.4981 3.0269 19 6 14.5371 2.5131 1.1403 20 7 13.9373 3.2774 0.2669 21 14 16.3835 2.2487 1.0381 22 1 16.6733 1.1401 0.0935 23 1 17.0358 3.4928 0.5563 24 1 16.9093 1.9031 2.3833 25 6 11.5938 1.6575 3.1893 26 6 10.2405 1.5486 3.0694 27 6 5.5811 0.8189 -0.7285 28 7 4.2607 0.8399 -0.8007 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5489 2.1252 -1.3970 35 1 1.9982 3.1543 -1.3071 36 1 2.0699 1.5875 -2.1491 37 1 5.8613 2.5759 2.1436 38 1 8.1552 1.4564 -0.3382 39 1 9.9720 1.6756 -0.3230 40 1 12.3984 1.8804 -0.1243 41 1 14.4507 3.7072 -0.4350 42 1 12.0525 1.6499 4.1671 43 1 9.6267 1.4550 3.9531 44 1 6.1639 0.3216 -1.4897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358178599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:08 Heat of formation + Delta-G solvation = -2.472359 kcal Electronic energy + Delta-G solvation = -25684.806544 eV Core-core repulsion = 21986.469182 eV Total energy + Delta-G solvation = -3698.337362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.47180 -40.88361 -39.06850 -37.46264 -35.99956 -35.72156 -34.77006 -32.55534 -31.43013 -31.31965 -29.87775 -27.83320 -26.29445 -25.83512 -24.44170 -23.48782 -22.80727 -21.73248 -21.15775 -19.53650 -19.35158 -18.46904 -17.83277 -17.75596 -17.17710 -16.21673 -15.95189 -15.79260 -15.75357 -15.69334 -15.14877 -15.10428 -14.73961 -14.54553 -14.30095 -13.95985 -13.74739 -13.56820 -13.28325 -13.03870 -12.89964 -12.81428 -12.67260 -12.52564 -12.42201 -12.22340 -11.96827 -11.91125 -11.77865 -11.59403 -11.52093 -11.40229 -11.16833 -10.94262 -10.29811 -9.65992 -9.56355 -9.35050 -8.83352 -6.52560 -0.29725 -0.02819 0.40084 1.13537 1.37959 1.41824 1.53396 1.94133 1.99084 2.15206 2.62636 2.76053 2.90535 3.10977 3.42546 3.64596 3.74823 3.95440 4.00395 4.08947 4.20037 4.28218 4.41057 4.48407 4.56988 4.63496 4.74108 4.75918 4.90347 4.95113 4.99485 5.05422 5.12144 5.12502 5.17807 5.21075 5.25311 5.41744 5.49561 5.51335 5.54942 5.75924 5.86017 5.91694 5.96070 6.18987 6.38254 6.50727 6.73192 6.84320 7.01617 7.15265 8.11175 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.036502 B = 0.002050 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.906804 B =13652.369687 C =14080.869257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.020 4.020 4 H 0.093 0.907 5 C -0.134 4.134 6 C 0.283 3.717 7 N -0.516 5.516 8 C 0.127 3.873 9 C 0.048 3.952 10 N -0.653 5.653 11 C 0.576 3.424 12 O -0.581 6.581 13 C -0.295 4.295 14 C -0.051 4.051 15 C -0.197 4.197 16 C 0.101 3.899 17 C -0.466 4.466 18 H 0.086 0.914 19 C 0.038 3.962 20 N -0.793 5.793 21 Si 0.987 3.013 22 H -0.258 1.258 23 H -0.265 1.265 24 H -0.258 1.258 25 C -0.252 4.252 26 C -0.028 4.028 27 C 0.130 3.870 28 N -0.494 5.494 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.160 0.840 38 H 0.427 0.573 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.298 0.702 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.648 -2.979 -8.111 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.040 4.040 4 H 0.111 0.889 5 C -0.192 4.192 6 C 0.015 3.985 7 N -0.230 5.230 8 C -0.041 4.041 9 C -0.052 4.052 10 N -0.300 5.300 11 C 0.372 3.628 12 O -0.463 6.463 13 C -0.300 4.300 14 C -0.070 4.070 15 C -0.216 4.216 16 C 0.098 3.902 17 C -0.493 4.493 18 H 0.104 0.896 19 C -0.182 4.182 20 N -0.416 5.416 21 Si 0.807 3.193 22 H -0.183 1.183 23 H -0.190 1.190 24 H -0.182 1.182 25 C -0.271 4.271 26 C -0.047 4.047 27 C -0.040 4.040 28 N -0.207 5.207 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.177 0.823 38 H 0.267 0.733 39 H 0.147 0.853 40 H 0.134 0.866 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -16.006 -2.852 -7.686 17.983 hybrid contribution 2.386 0.183 0.195 2.401 sum -13.620 -2.669 -7.491 15.771 Atomic orbital electron populations 1.21793 0.93347 1.02517 1.02770 1.21467 0.97505 0.93775 1.01829 1.20099 0.83820 0.98949 1.01135 0.88892 1.21791 1.02914 0.99376 0.95097 1.23682 0.98960 0.90317 0.85533 1.68291 1.11858 1.19396 1.23455 1.23294 0.88778 0.93782 0.98216 1.19688 0.85738 1.00042 0.99778 1.43171 1.03367 1.73503 1.09962 1.18589 0.88478 0.73737 0.81969 1.90661 1.65424 1.52301 1.37943 1.18911 0.90077 1.26093 0.94878 1.20750 0.93730 0.96030 0.96446 1.21030 0.94238 1.08776 0.97565 1.18185 0.93928 0.86036 0.92038 1.20181 0.92433 1.31523 1.05123 0.89558 1.26925 1.06529 0.91611 0.93102 1.69745 1.41293 1.18512 1.12063 0.85095 0.74897 0.79199 0.80106 1.18262 1.18982 1.18155 1.20847 0.93266 1.15343 0.97693 1.20511 0.94352 0.93924 0.95905 1.23633 0.90549 0.93127 0.96677 1.68192 1.06341 1.18064 1.28060 0.91907 0.92373 0.90986 0.91109 0.93821 0.89226 0.93578 0.91823 0.82330 0.73289 0.85315 0.86606 0.89019 0.87753 0.87712 0.77683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.67 71.98 0.70 -1.13 16 2 C -0.11 -1.91 5.26 30.59 0.16 -1.75 16 3 C -0.02 -0.40 2.72 -11.54 -0.03 -0.43 16 4 H 0.09 1.88 8.09 -2.39 -0.02 1.87 16 5 C -0.13 -2.16 8.84 71.98 0.64 -1.52 16 6 C 0.28 7.66 6.34 138.74 0.88 8.54 16 7 N -0.52 -16.39 10.29 -187.36 -1.93 -18.32 16 8 C 0.13 4.25 9.93 84.88 0.84 5.09 16 9 C 0.05 1.40 6.34 38.36 0.24 1.64 16 10 N -0.65 -19.38 5.31 -305.70 -1.62 -21.00 16 11 C 0.58 22.24 7.54 86.71 0.65 22.89 16 12 O -0.58 -25.62 14.00 -4.03 -0.06 -25.68 16 13 C -0.29 -12.40 5.89 -19.93 -0.12 -12.51 16 14 C -0.05 -2.02 9.47 22.25 0.21 -1.81 16 15 C -0.20 -9.09 8.63 22.47 0.19 -8.90 16 16 C 0.10 5.01 5.58 -21.28 -0.12 4.89 16 17 C -0.47 -22.45 9.05 23.46 0.21 -22.24 16 18 H 0.09 4.01 7.91 -2.91 -0.02 3.98 16 19 C 0.04 1.69 5.15 85.35 0.44 2.12 16 20 N -0.79 -36.08 10.93 21.87 0.24 -35.84 16 21 Si 0.99 33.21 29.59 68.60 2.03 35.24 16 22 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 23 H -0.27 -8.51 7.11 99.48 0.71 -7.80 16 24 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 25 C -0.25 -11.88 9.73 22.47 0.22 -11.66 16 26 C -0.03 -1.25 9.52 22.25 0.21 -1.04 16 27 C 0.13 3.10 11.26 84.88 0.96 4.05 16 28 N -0.49 -12.58 9.87 -187.36 -1.85 -14.43 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.71 6.57 -2.39 -0.02 0.70 16 32 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 1.01 6.57 -2.38 -0.02 0.99 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 1.07 8.01 -2.39 -0.02 1.05 16 37 H 0.16 5.84 6.45 -2.91 -0.02 5.82 16 38 H 0.43 9.98 6.84 -92.71 -0.63 9.35 16 39 H 0.13 3.97 6.38 -2.91 -0.02 3.95 16 40 H 0.12 5.43 6.15 -2.91 -0.02 5.41 16 41 H 0.30 12.02 8.29 -92.71 -0.77 11.25 16 42 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 43 H 0.10 4.59 7.63 -2.91 -0.02 4.57 16 44 H 0.21 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -59.61 367.93 3.50 -56.11 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.40 Total: 37.68 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 6.29 Total: -13.76 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -5.16 Total: -89.59 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.06 Total: -25.68 kcal Atomic # 14 Polarization: 33.21 SS G_CDS: 2.03 Total: 35.24 kcal Total: -59.61 3.50 -56.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358178599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.638 kcal (2) G-P(sol) polarization free energy of solvation -59.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds