Wall clock time and date at job start Tue Mar 31 2020 14:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99600 * 2 1 4 4 N 1.46504 * 109.46702 * 125.00820 * 3 2 1 5 5 C 1.46497 * 119.99346 * 269.99383 * 4 3 2 6 6 C 1.50697 * 109.47213 * 270.00128 * 5 4 3 7 7 H 1.07999 * 120.00365 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00067 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00247 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00131 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47106 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46916 * 120.00172 * 10 8 6 13 13 H 1.48494 * 109.47253 * 240.00089 * 10 8 6 14 14 C 1.34774 * 120.00239 * 89.99665 * 4 3 2 15 15 O 1.21284 * 119.99547 * 179.97438 * 14 4 3 16 16 C 1.50691 * 119.99916 * 359.97438 * 14 4 3 17 17 C 1.50703 * 109.47259 * 180.02562 * 16 14 4 18 18 C 1.39933 * 126.03248 * 270.00443 * 17 16 14 19 19 N 1.30878 * 108.24000 * 179.71563 * 18 17 16 20 20 N 1.40087 * 108.21731 * 0.43537 * 19 18 17 21 21 C 1.40186 * 126.04903 * 179.82485 * 20 19 18 22 22 C 1.38838 * 120.06354 * 179.71217 * 21 20 19 23 23 C 1.38120 * 119.93062 * 179.97438 * 22 21 20 24 24 C 1.38285 * 120.06514 * 359.97438 * 23 22 21 25 25 C 1.38272 * 120.13574 * 359.97438 * 24 23 22 26 26 C 1.38118 * 120.06859 * 0.02584 * 25 24 23 27 27 C 1.35219 * 107.89648 * 359.55432 * 20 19 18 28 28 H 1.08001 * 119.99992 * 180.02562 * 1 2 3 29 29 H 1.08006 * 120.00216 * 359.97438 * 1 2 3 30 30 H 1.07993 * 119.99942 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47197 * 5.00460 * 3 2 1 32 32 H 1.09006 * 109.46726 * 244.99936 * 3 2 1 33 33 H 1.08998 * 109.47615 * 30.00590 * 5 4 3 34 34 H 1.09001 * 109.47225 * 150.00406 * 5 4 3 35 35 H 0.96992 * 120.00524 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47624 * 60.00214 * 16 14 4 37 37 H 1.09000 * 109.47340 * 299.99827 * 16 14 4 38 38 H 1.07996 * 125.87870 * 359.97438 * 18 17 16 39 39 H 1.07992 * 120.03688 * 359.97438 * 22 21 20 40 40 H 1.07997 * 119.96399 * 180.25185 * 23 22 21 41 41 H 1.08001 * 119.93139 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.96688 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.03895 * 179.97438 * 26 25 24 44 44 H 1.08001 * 126.14447 * 180.26134 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3435 2.4804 7 1 3.3033 3.8371 1.6365 8 6 2.5194 4.0664 3.6086 9 7 1.9609 3.4655 4.6365 10 14 2.8738 5.8992 3.6778 11 1 3.5015 6.3305 2.4030 12 1 1.6036 6.6417 3.8797 13 1 3.7974 6.1825 4.8055 14 6 4.2497 0.8661 0.9822 15 8 5.0200 0.8887 1.9188 16 6 4.6968 0.3174 -0.3481 17 6 6.1311 -0.1343 -0.2488 18 6 7.2609 0.6509 -0.5037 19 7 8.3247 -0.0856 -0.3065 20 7 7.9056 -1.3679 0.0712 21 6 8.7402 -2.4540 0.3695 22 6 8.1891 -3.6740 0.7378 23 6 9.0140 -4.7424 1.0307 24 6 10.3873 -4.5981 0.9568 25 6 10.9390 -3.3846 0.5893 26 6 10.1194 -2.3125 0.2952 27 6 6.5538 -1.3708 0.1028 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 1.4888 1.6965 2.5460 34 1 3.0990 1.3603 3.2259 35 1 1.7326 3.9739 5.4303 36 1 4.6119 1.0938 -1.1085 37 1 4.0677 -0.5296 -0.6218 38 1 7.2561 1.6875 -0.8066 39 1 7.1167 -3.7874 0.7953 40 1 8.5858 -5.6928 1.3133 41 1 11.0302 -5.4349 1.1867 42 1 12.0119 -3.2748 0.5329 43 1 10.5508 -1.3648 0.0086 44 1 5.9244 -2.2093 0.3620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359381550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:19 Heat of formation + Delta-G solvation = 98.413170 kcal Electronic energy + Delta-G solvation = -26175.125169 eV Core-core repulsion = 22481.162532 eV Total energy + Delta-G solvation = -3693.962637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.56863 -39.27849 -38.77941 -35.62388 -33.85999 -33.17951 -32.10627 -31.83338 -31.19451 -29.55234 -28.07526 -26.56965 -25.31243 -23.50196 -23.20629 -22.42807 -20.82209 -20.18601 -19.80796 -18.54981 -17.91901 -16.53013 -16.33955 -16.27196 -15.57121 -15.40758 -15.10970 -14.84912 -14.71785 -14.40647 -14.06999 -13.95482 -13.76644 -13.26982 -12.97291 -12.90319 -12.65671 -12.45510 -12.24943 -11.90280 -11.65122 -11.53292 -11.42126 -11.24061 -11.01326 -10.85840 -10.61105 -10.52815 -10.33556 -10.16418 -9.59659 -9.29360 -9.18802 -9.10366 -8.77440 -8.41542 -7.97685 -7.64397 -6.02159 -4.06561 0.70081 1.06080 2.14082 2.37376 2.45261 2.80403 3.30973 3.38555 3.41740 3.49889 3.56575 4.13294 4.33756 4.47694 4.58137 4.73838 4.76596 4.90060 5.08426 5.12080 5.16683 5.24931 5.29228 5.32304 5.38664 5.45743 5.52694 5.57809 5.67296 5.76130 5.82705 6.01781 6.06695 6.09904 6.16594 6.21086 6.21866 6.49850 6.65749 6.78959 6.91936 7.11893 7.15168 7.48386 7.59192 7.65362 7.94897 8.26429 8.46095 8.93908 9.15776 9.58613 11.05984 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.002838 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.263054 B = 9862.528629 C =10865.250939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.136 3.864 4 N -0.596 5.596 5 C 0.248 3.752 6 C -0.524 4.524 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.504 3.496 15 O -0.532 6.532 16 C -0.066 4.066 17 C -0.191 4.191 18 C 0.079 3.921 19 N -0.294 5.294 20 N -0.328 5.328 21 C 0.173 3.827 22 C -0.145 4.145 23 C -0.092 4.092 24 C -0.138 4.138 25 C -0.096 4.096 26 C -0.125 4.125 27 C 0.062 3.938 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.188 0.812 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.532 -15.638 -13.530 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.187 4.187 3 C 0.012 3.988 4 N -0.328 5.328 5 C 0.128 3.872 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.290 3.710 15 O -0.409 6.409 16 C -0.107 4.107 17 C -0.202 4.202 18 C -0.109 4.109 19 N -0.112 5.112 20 N -0.103 5.103 21 C 0.080 3.920 22 C -0.166 4.166 23 C -0.110 4.110 24 C -0.157 4.157 25 C -0.114 4.114 26 C -0.145 4.145 27 C -0.079 4.079 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.205 0.795 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.155 0.845 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 10.176 -15.642 -12.820 22.639 hybrid contribution -0.980 1.109 0.279 1.506 sum 9.196 -14.532 -12.540 21.284 Atomic orbital electron populations 1.23816 0.95897 1.01724 1.00721 1.23437 0.96376 0.99081 0.99783 1.20585 0.93176 0.95221 0.89844 1.48233 1.10523 1.60521 1.13486 1.19244 0.95270 0.93727 0.78909 1.21478 1.40225 0.93368 1.01177 0.92403 1.24939 0.95128 0.98716 0.95382 1.69942 1.42300 1.36039 1.05145 0.86464 0.77873 0.85067 0.78146 1.19770 1.21015 1.20930 1.20340 0.82194 0.78794 0.89643 1.90690 1.52436 1.55825 1.41935 1.20075 0.91535 1.01804 0.97309 1.19610 0.95700 0.93232 1.11661 1.23944 0.89391 0.99904 0.97658 1.77371 1.23276 0.88566 1.21968 1.45653 1.04036 1.08341 1.52288 1.17596 0.90021 0.85010 0.99381 1.20856 1.00766 0.91514 1.03495 1.20961 0.93426 0.98134 0.98526 1.21193 0.95159 0.97876 1.01429 1.21058 0.99911 0.92379 0.98066 1.20922 0.90990 1.00510 1.02045 1.22222 0.84117 1.00048 1.01540 0.88870 0.88300 0.87842 0.89538 0.90658 0.95093 0.94041 0.92831 0.88414 0.88952 0.79476 0.85215 0.85108 0.85596 0.85234 0.84506 0.80914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 14.32 29.01 0.42 -1.86 16 2 C -0.17 -2.24 9.74 -36.02 -0.35 -2.59 16 3 C 0.14 2.09 5.65 -5.19 -0.03 2.06 16 4 N -0.60 -12.22 2.44 -176.44 -0.43 -12.65 16 5 C 0.25 6.45 5.16 -5.20 -0.03 6.42 16 6 C -0.52 -14.81 9.39 -34.44 -0.32 -15.13 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 10 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.50 10.14 7.66 -10.99 -0.08 10.06 16 15 O -0.53 -13.44 15.61 5.55 0.09 -13.36 16 16 C -0.07 -0.92 4.74 -29.04 -0.14 -1.06 16 17 C -0.19 -2.87 4.59 -105.03 -0.48 -3.35 16 18 C 0.08 1.20 11.96 -17.32 -0.21 0.99 16 19 N -0.29 -4.74 11.87 30.64 0.36 -4.37 16 20 N -0.33 -4.90 3.80 -10.70 -0.04 -4.94 16 21 C 0.17 2.24 6.69 -83.59 -0.56 1.69 16 22 C -0.15 -1.53 9.46 -39.40 -0.37 -1.90 16 23 C -0.09 -0.78 10.04 -39.61 -0.40 -1.18 16 24 C -0.14 -1.12 10.04 -39.55 -0.40 -1.52 16 25 C -0.10 -0.87 10.04 -39.61 -0.40 -1.26 16 26 C -0.12 -1.46 9.66 -39.40 -0.38 -1.84 16 27 C 0.06 0.88 10.71 -17.10 -0.18 0.70 16 28 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.10 1.22 7.84 -52.48 -0.41 0.81 16 30 H 0.10 1.27 7.83 -52.49 -0.41 0.86 16 31 H 0.09 1.41 7.72 -51.93 -0.40 1.01 16 32 H 0.08 0.93 6.44 -51.93 -0.33 0.59 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.10 1.16 7.40 -51.93 -0.38 0.77 16 37 H 0.09 1.04 7.77 -51.93 -0.40 0.64 16 38 H 0.19 2.37 8.06 -52.49 -0.42 1.95 16 39 H 0.13 1.17 6.74 -52.49 -0.35 0.81 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.14 1.65 7.70 -52.49 -0.40 1.25 16 44 H 0.17 1.92 7.04 -52.49 -0.37 1.55 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -36.08 381.57 -8.50 -44.58 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.94 Total: 2.25 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -4.01 Total: -8.16 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.63 Total: -48.03 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.08 -8.50 -44.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359381550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.993 kcal (2) G-P(sol) polarization free energy of solvation -36.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds