Wall clock time and date at job start Tue Mar 31 2020 14:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99600 * 2 1 4 4 N 1.46504 * 109.46702 * 125.00820 * 3 2 1 5 5 C 1.46497 * 119.99346 * 269.99383 * 4 3 2 6 6 C 1.50697 * 109.47213 * 270.00128 * 5 4 3 7 7 H 1.07999 * 120.00365 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00067 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00247 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00131 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47106 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46916 * 120.00172 * 10 8 6 13 13 H 1.48494 * 109.47253 * 240.00089 * 10 8 6 14 14 C 1.34774 * 120.00239 * 89.99665 * 4 3 2 15 15 O 1.21284 * 119.99547 * 179.97438 * 14 4 3 16 16 C 1.50691 * 119.99916 * 359.97438 * 14 4 3 17 17 C 1.50703 * 109.47259 * 180.02562 * 16 14 4 18 18 C 1.39933 * 126.03248 * 270.00443 * 17 16 14 19 19 N 1.30878 * 108.24000 * 179.71563 * 18 17 16 20 20 N 1.40087 * 108.21731 * 0.43537 * 19 18 17 21 21 C 1.40186 * 126.04903 * 179.82485 * 20 19 18 22 22 C 1.38838 * 120.06354 * 179.71217 * 21 20 19 23 23 C 1.38120 * 119.93062 * 179.97438 * 22 21 20 24 24 C 1.38285 * 120.06514 * 359.97438 * 23 22 21 25 25 C 1.38272 * 120.13574 * 359.97438 * 24 23 22 26 26 C 1.38118 * 120.06859 * 0.02584 * 25 24 23 27 27 C 1.35219 * 107.89648 * 359.55432 * 20 19 18 28 28 H 1.08001 * 119.99992 * 180.02562 * 1 2 3 29 29 H 1.08006 * 120.00216 * 359.97438 * 1 2 3 30 30 H 1.07993 * 119.99942 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47197 * 5.00460 * 3 2 1 32 32 H 1.09006 * 109.46726 * 244.99936 * 3 2 1 33 33 H 1.08998 * 109.47615 * 30.00590 * 5 4 3 34 34 H 1.09001 * 109.47225 * 150.00406 * 5 4 3 35 35 H 0.96992 * 120.00524 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47624 * 60.00214 * 16 14 4 37 37 H 1.09000 * 109.47340 * 299.99827 * 16 14 4 38 38 H 1.07996 * 125.87870 * 359.97438 * 18 17 16 39 39 H 1.07992 * 120.03688 * 359.97438 * 22 21 20 40 40 H 1.07997 * 119.96399 * 180.25185 * 23 22 21 41 41 H 1.08001 * 119.93139 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.96688 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.03895 * 179.97438 * 26 25 24 44 44 H 1.08001 * 126.14447 * 180.26134 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3435 2.4804 7 1 3.3033 3.8371 1.6365 8 6 2.5194 4.0664 3.6086 9 7 1.9609 3.4655 4.6365 10 14 2.8738 5.8992 3.6778 11 1 3.5015 6.3305 2.4030 12 1 1.6036 6.6417 3.8797 13 1 3.7974 6.1825 4.8055 14 6 4.2497 0.8661 0.9822 15 8 5.0200 0.8887 1.9188 16 6 4.6968 0.3174 -0.3481 17 6 6.1311 -0.1343 -0.2488 18 6 7.2609 0.6509 -0.5037 19 7 8.3247 -0.0856 -0.3065 20 7 7.9056 -1.3679 0.0712 21 6 8.7402 -2.4540 0.3695 22 6 8.1891 -3.6740 0.7378 23 6 9.0140 -4.7424 1.0307 24 6 10.3873 -4.5981 0.9568 25 6 10.9390 -3.3846 0.5893 26 6 10.1194 -2.3125 0.2952 27 6 6.5538 -1.3708 0.1028 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 1.4888 1.6965 2.5460 34 1 3.0990 1.3603 3.2259 35 1 1.7326 3.9739 5.4303 36 1 4.6119 1.0938 -1.1085 37 1 4.0677 -0.5296 -0.6218 38 1 7.2561 1.6875 -0.8066 39 1 7.1167 -3.7874 0.7953 40 1 8.5858 -5.6928 1.3133 41 1 11.0302 -5.4349 1.1867 42 1 12.0119 -3.2748 0.5329 43 1 10.5508 -1.3648 0.0086 44 1 5.9244 -2.2093 0.3620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359381550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:19 Heat of formation + Delta-G solvation = 77.364681 kcal Electronic energy + Delta-G solvation = -26176.037900 eV Core-core repulsion = 22481.162532 eV Total energy + Delta-G solvation = -3694.875368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.61816 -40.58004 -39.83941 -37.12738 -35.17944 -34.73236 -33.59295 -33.03235 -32.00859 -30.53928 -29.73053 -27.88232 -26.76541 -24.87225 -24.28460 -23.66218 -21.76051 -21.36731 -20.87673 -19.86709 -18.98073 -18.60936 -17.77280 -17.26179 -17.02144 -16.34769 -16.25971 -16.18448 -16.08640 -15.60060 -15.40838 -14.88079 -14.58818 -14.45773 -14.37531 -14.05628 -14.01313 -13.84356 -13.63447 -13.24942 -12.92784 -12.89390 -12.71140 -12.58806 -12.53688 -12.21390 -12.17792 -12.09624 -11.62350 -11.61318 -11.31052 -10.64153 -10.60581 -10.24513 -10.03440 -9.96168 -9.38716 -8.96299 -8.20878 -6.35078 -0.16177 0.32305 1.17548 1.35626 1.38195 1.38929 1.42664 1.50241 1.66405 1.95852 2.37397 2.68436 2.79902 3.08775 3.41407 3.75833 3.90611 3.93857 3.94879 4.11183 4.20951 4.23908 4.32537 4.35700 4.39484 4.42559 4.55465 4.65546 4.70568 4.78341 4.93676 5.00950 5.05950 5.08669 5.13192 5.26291 5.29174 5.37135 5.49061 5.57052 5.60624 5.77810 5.80066 5.81800 6.03303 6.10040 6.20472 6.57403 6.74032 6.88006 7.31558 7.59685 8.86248 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.002838 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.263054 B = 9862.528629 C =10865.250939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.180 4.180 3 C 0.131 3.869 4 N -0.600 5.600 5 C 0.265 3.735 6 C -0.537 4.537 7 H 0.055 0.945 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.965 3.035 11 H -0.265 1.265 12 H -0.269 1.269 13 H -0.285 1.285 14 C 0.498 3.502 15 O -0.595 6.595 16 C -0.046 4.046 17 C -0.213 4.213 18 C 0.063 3.937 19 N -0.325 5.325 20 N -0.331 5.331 21 C 0.132 3.868 22 C -0.152 4.152 23 C -0.090 4.090 24 C -0.129 4.129 25 C -0.097 4.097 26 C -0.145 4.145 27 C 0.060 3.940 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.019 0.981 34 H -0.008 1.008 35 H 0.266 0.734 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.203 0.797 39 H 0.142 0.858 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.121 0.879 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.564 -17.220 -15.105 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.199 4.199 3 C 0.009 3.991 4 N -0.331 5.331 5 C 0.144 3.856 6 C -0.576 4.576 7 H 0.073 0.927 8 C -0.193 4.193 9 N -0.570 5.570 10 Si 0.790 3.210 11 H -0.189 1.189 12 H -0.194 1.194 13 H -0.211 1.211 14 C 0.287 3.713 15 O -0.476 6.476 16 C -0.087 4.087 17 C -0.223 4.223 18 C -0.123 4.123 19 N -0.144 5.144 20 N -0.107 5.107 21 C 0.040 3.960 22 C -0.172 4.172 23 C -0.109 4.109 24 C -0.148 4.148 25 C -0.115 4.115 26 C -0.165 4.165 27 C -0.082 4.082 28 H 0.133 0.867 29 H 0.113 0.887 30 H 0.138 0.862 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.037 0.963 34 H 0.010 0.990 35 H 0.075 0.925 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.219 0.781 39 H 0.159 0.841 40 H 0.180 0.820 41 H 0.177 0.823 42 H 0.171 0.829 43 H 0.139 0.861 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 10.194 -17.242 -14.454 24.700 hybrid contribution -0.946 1.453 0.811 1.914 sum 9.248 -15.789 -13.643 22.824 Atomic orbital electron populations 1.24032 0.95776 1.02657 0.98919 1.23379 0.96670 0.98538 1.01310 1.20863 0.92747 0.96162 0.89281 1.48216 1.11889 1.60092 1.12865 1.18630 0.93618 0.92574 0.80820 1.21768 1.40040 0.94542 1.01251 0.92680 1.25857 0.94824 1.03650 0.94975 1.70062 1.43213 1.37975 1.05780 0.85401 0.78153 0.79291 0.78179 1.18885 1.19415 1.21105 1.21436 0.81090 0.77514 0.91244 1.90658 1.54035 1.58284 1.44595 1.20031 0.91379 1.03598 0.93645 1.19785 0.96011 0.93622 1.12911 1.24314 0.89576 1.00693 0.97735 1.77294 1.24246 0.89643 1.23192 1.45869 1.04622 1.08342 1.51820 1.18053 0.90512 0.85534 1.01881 1.21141 1.01830 0.91102 1.03152 1.21401 0.93609 0.98660 0.97204 1.21648 0.95573 0.98220 0.99326 1.21382 1.00922 0.92016 0.97221 1.21012 0.91188 1.00986 1.03292 1.22738 0.84264 1.00818 1.00380 0.86702 0.88682 0.86196 0.90891 0.86862 0.96305 0.98975 0.92549 0.85564 0.85301 0.78059 0.84067 0.81993 0.82256 0.82896 0.86099 0.78274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.00 14.32 67.78 0.97 -3.03 16 2 C -0.18 -4.43 9.74 25.65 0.25 -4.18 16 3 C 0.13 3.86 5.65 85.63 0.48 4.34 16 4 N -0.60 -24.79 2.44 -830.51 -2.03 -26.81 16 5 C 0.27 14.40 5.16 85.63 0.44 14.84 16 6 C -0.54 -31.19 9.39 25.60 0.24 -30.95 16 7 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 8 C 0.01 0.32 5.46 84.66 0.46 0.78 16 9 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 10 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 11 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 14 C 0.50 20.12 7.66 87.65 0.67 20.79 16 15 O -0.59 -31.27 15.61 -3.04 -0.05 -31.32 16 16 C -0.05 -1.20 4.74 29.10 0.14 -1.07 16 17 C -0.21 -6.27 4.59 -20.13 -0.09 -6.36 16 18 C 0.06 1.97 11.96 85.25 1.02 2.99 16 19 N -0.32 -10.89 11.87 -56.96 -0.68 -11.57 16 20 N -0.33 -10.11 3.80 -187.76 -0.71 -10.82 16 21 C 0.13 3.45 6.69 38.09 0.25 3.71 16 22 C -0.15 -3.00 9.46 22.39 0.21 -2.79 16 23 C -0.09 -1.29 10.04 22.25 0.22 -1.07 16 24 C -0.13 -1.71 10.04 22.29 0.22 -1.49 16 25 C -0.10 -1.62 10.04 22.25 0.22 -1.39 16 26 C -0.14 -3.47 9.66 22.39 0.22 -3.25 16 27 C 0.06 1.69 10.71 83.50 0.89 2.58 16 28 H 0.11 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.09 2.22 7.84 -2.91 -0.02 2.19 16 30 H 0.12 2.57 7.83 -2.91 -0.02 2.55 16 31 H 0.07 2.33 7.72 -2.39 -0.02 2.31 16 32 H 0.11 2.43 6.44 -2.38 -0.02 2.42 16 33 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 34 H -0.01 -0.50 7.42 -2.39 -0.02 -0.52 16 35 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.13 2.60 7.40 -2.39 -0.02 2.58 16 37 H 0.13 2.44 7.77 -2.39 -0.02 2.42 16 38 H 0.20 5.21 8.06 -2.91 -0.02 5.19 16 39 H 0.14 2.32 6.74 -2.91 -0.02 2.30 16 40 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 41 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.12 3.16 7.70 -2.91 -0.02 3.14 16 44 H 0.20 4.14 7.04 -2.91 -0.02 4.12 16 Total: -1.00 -83.97 381.57 6.68 -77.29 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 1.00 Total: 18.04 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 6.83 Total: -5.54 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -3.13 Total: -106.11 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.05 Total: -31.32 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -83.97 6.68 -77.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359381550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.660 kcal (2) G-P(sol) polarization free energy of solvation -83.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds