Wall clock time and date at job start Tue Mar 31 2020 15:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47035 * 2 1 4 4 N 1.46901 * 109.47040 * 240.00243 * 2 1 3 5 5 C 1.46903 * 110.99961 * 84.99751 * 4 2 1 6 6 C 1.52998 * 109.46965 * 179.97438 * 5 4 2 7 7 H 1.08996 * 110.01714 * 306.38901 * 6 5 4 8 8 C 1.54275 * 110.03141 * 184.99965 * 6 5 4 9 9 C 1.54887 * 104.19375 * 217.10582 * 8 6 5 10 10 C 1.54883 * 102.74944 * 37.94484 * 9 8 6 11 11 C 1.53872 * 110.03318 * 67.83552 * 6 5 4 12 12 F 1.39904 * 110.03039 * 238.56875 * 11 6 5 13 13 F 1.39898 * 110.03288 * 359.97438 * 11 6 5 14 14 C 1.50695 * 109.47261 * 120.00200 * 2 1 3 15 15 C 1.38299 * 119.93077 * 79.72596 * 14 2 1 16 16 C 1.38106 * 120.06976 * 179.72243 * 15 14 2 17 17 C 1.38887 * 119.92522 * 0.55244 * 16 15 14 18 18 O 1.35752 * 120.06328 * 179.74692 * 17 16 15 19 19 C 1.34833 * 116.99322 * 174.44399 * 18 17 16 20 20 H 1.07998 * 120.00386 * 5.04639 * 19 18 17 21 21 C 1.38655 * 119.99283 * 185.05471 * 19 18 17 22 22 N 1.31553 * 120.00364 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99785 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47620 * 89.99551 * 23 21 19 25 25 H 1.48495 * 109.47205 * 210.00245 * 23 21 19 26 26 H 1.48504 * 109.47203 * 329.99912 * 23 21 19 27 27 C 1.38876 * 119.86255 * 359.72160 * 17 16 15 28 28 C 1.38102 * 119.93456 * 0.02562 * 27 17 16 29 29 H 1.09009 * 109.46634 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47445 * 299.99488 * 1 2 3 31 31 H 1.08996 * 109.47575 * 59.99928 * 1 2 3 32 32 H 1.00897 * 110.99994 * 208.94698 * 4 2 1 33 33 H 1.08996 * 109.46838 * 59.99738 * 5 4 2 34 34 H 1.08996 * 109.47060 * 300.00013 * 5 4 2 35 35 H 1.08999 * 110.48542 * 335.78543 * 8 6 5 36 36 H 1.09000 * 110.48504 * 98.42625 * 8 6 5 37 37 H 1.08999 * 110.75063 * 156.26137 * 9 8 6 38 38 H 1.08997 * 110.75421 * 279.62300 * 9 8 6 39 39 H 1.08995 * 110.48918 * 80.73688 * 10 9 8 40 40 H 1.09007 * 110.48179 * 203.37991 * 10 9 8 41 41 H 1.07995 * 119.96682 * 0.02562 * 15 14 2 42 42 H 1.07993 * 120.03852 * 180.27146 * 16 15 14 43 43 H 0.97004 * 119.99938 * 180.02562 * 22 21 19 44 44 H 1.08001 * 120.03027 * 179.97438 * 27 17 16 45 45 H 1.07992 * 119.96558 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5962 -0.5327 -3.5742 7 1 3.5402 -1.0250 -3.3411 8 6 2.7862 0.4430 -4.7540 9 6 2.3540 -0.3746 -5.9964 10 6 1.1502 -1.1921 -5.4658 11 6 1.5560 -1.5724 -4.0268 12 9 2.1196 -2.8527 -4.0102 13 9 0.4385 -1.5296 -3.1862 14 6 2.0324 -0.7104 1.2304 15 6 2.0609 -2.0927 1.2658 16 6 2.5261 -2.7466 2.3898 17 6 2.9548 -2.0148 3.4895 18 8 3.4077 -2.6548 4.5977 19 6 3.9155 -1.8872 5.5831 20 1 3.8740 -0.8109 5.5051 21 6 4.4911 -2.4800 6.6966 22 7 4.5413 -3.7911 6.7918 23 14 5.1952 -1.4168 8.0616 24 1 4.1379 -1.1359 9.0658 25 1 6.3211 -2.1314 8.7149 26 1 5.6864 -0.1375 7.4893 27 6 2.9196 -0.6269 3.4529 28 6 2.4582 0.0212 2.3241 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9173 -1.1204 -1.0288 33 1 2.7587 1.0463 -2.1182 34 1 1.0870 0.6164 -2.5525 35 1 2.1477 1.3180 -4.6321 36 1 3.8313 0.7409 -4.8380 37 1 2.0450 0.2869 -6.8058 38 1 3.1568 -1.0361 -6.3220 39 1 0.2476 -0.5813 -5.4589 40 1 1.0015 -2.0876 -6.0694 41 1 1.7236 -2.6612 0.4118 42 1 2.5522 -3.8259 2.4152 43 1 4.9437 -4.2057 7.5710 44 1 3.2519 -0.0551 4.3067 45 1 2.4310 1.1004 2.2949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390917024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:39 Heat of formation + Delta-G solvation = -114.518176 kcal Electronic energy + Delta-G solvation = -27537.667120 eV Core-core repulsion = 23383.781900 eV Total energy + Delta-G solvation = -4153.885220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.81211 -46.86008 -39.22665 -38.25874 -37.19657 -35.30649 -32.39523 -31.71456 -30.16536 -28.94429 -27.94984 -27.77561 -25.38925 -24.19264 -22.28412 -21.77786 -21.47582 -20.38508 -19.81740 -17.91745 -17.73017 -17.25809 -16.79508 -16.15525 -15.58755 -15.27460 -14.74586 -14.49657 -14.39843 -14.30462 -14.09686 -13.90549 -13.60644 -13.49327 -13.25365 -13.18724 -12.73582 -12.66425 -12.48661 -12.29360 -12.07219 -11.96362 -11.72504 -11.65953 -11.65316 -11.50146 -11.21010 -11.17495 -11.04160 -10.71206 -10.62578 -10.59281 -10.41463 -10.23878 -9.31783 -8.81698 -8.32949 -8.14002 -7.15485 -6.43924 -4.02834 2.25380 2.32997 3.12905 3.13659 3.18503 3.60984 3.71524 3.88694 3.97345 4.09075 4.35473 4.58799 4.64957 4.77574 4.86592 5.01298 5.05212 5.09204 5.10768 5.20034 5.31881 5.35465 5.41157 5.47640 5.49994 5.52720 5.58121 5.71989 5.73995 5.75484 5.88763 5.91983 6.03933 6.08929 6.26689 6.43003 6.53903 6.76668 6.89160 7.05657 7.07364 7.28391 7.44239 7.45768 7.56057 7.86188 8.01192 9.01687 9.72631 10.74154 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.026695 B = 0.002328 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.622570 B =12023.359606 C =12227.487849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.146 3.854 3 H 0.039 0.961 4 N -0.679 5.679 5 C 0.068 3.932 6 C -0.132 4.132 7 H 0.098 0.902 8 C -0.117 4.117 9 C -0.123 4.123 10 C -0.166 4.166 11 C 0.295 3.705 12 F -0.200 7.200 13 F -0.181 7.181 14 C -0.192 4.192 15 C -0.054 4.054 16 C -0.195 4.195 17 C 0.155 3.845 18 O -0.178 6.178 19 C -0.392 4.392 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.268 1.268 27 C -0.235 4.235 28 C -0.065 4.065 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.344 0.656 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.785 9.840 -23.816 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.037 3.963 3 H 0.057 0.943 4 N -0.311 5.311 5 C -0.062 4.062 6 C -0.152 4.152 7 H 0.117 0.883 8 C -0.155 4.155 9 C -0.160 4.160 10 C -0.204 4.204 11 C 0.258 3.742 12 F -0.181 7.181 13 F -0.161 7.161 14 C -0.194 4.194 15 C -0.073 4.073 16 C -0.214 4.214 17 C 0.101 3.899 18 O -0.082 6.082 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.193 1.193 27 C -0.254 4.254 28 C -0.084 4.084 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.163 0.837 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.322 9.140 -23.705 25.957 hybrid contribution 1.091 0.919 1.129 1.820 sum -4.231 10.059 -22.576 25.075 Atomic orbital electron populations 1.21746 0.94492 1.02390 1.00136 1.20103 0.95206 0.94213 0.86740 0.94288 1.60583 1.33541 1.32729 1.04284 1.21949 1.00904 0.93675 0.89665 1.22871 0.99183 0.96365 0.96755 0.88336 1.22385 1.02616 0.97739 0.92809 1.22463 0.97138 0.98604 0.97804 1.23402 1.00674 1.02604 0.93724 1.21527 0.82544 0.80302 0.89811 1.93010 1.85463 1.42499 1.97160 1.93055 1.53268 1.96284 1.73539 1.19265 1.10177 0.93811 0.96109 1.20516 0.96782 0.93410 0.96547 1.20266 1.08751 0.99442 0.92942 1.19428 0.91943 0.90923 0.87559 1.83985 1.67292 1.35053 1.21827 1.21316 1.37949 0.90678 0.96861 0.89130 1.25286 0.96779 0.96313 0.98169 1.70040 1.41711 1.08720 1.29292 0.85720 0.78679 0.79070 0.79995 1.19886 1.20253 1.19252 1.21107 1.09900 0.94421 1.00014 1.20571 0.97018 0.98048 0.92787 0.91925 0.92871 0.93591 0.83728 0.94525 0.90206 0.90434 0.90281 0.90127 0.90535 0.88604 0.89202 0.86244 0.86597 0.92033 0.85674 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.39 37.16 0.35 -1.37 16 2 C 0.15 2.01 2.81 -68.87 -0.19 1.82 16 3 H 0.04 0.51 7.66 -51.93 -0.40 0.12 16 4 N -0.68 -8.52 4.78 -107.95 -0.52 -9.04 16 5 C 0.07 0.67 4.20 -3.82 -0.02 0.65 16 6 C -0.13 -1.14 2.94 -89.50 -0.26 -1.41 16 7 H 0.10 0.89 8.02 -51.93 -0.42 0.48 16 8 C -0.12 -0.69 6.36 -25.07 -0.16 -0.85 16 9 C -0.12 -0.66 6.91 -24.74 -0.17 -0.83 16 10 C -0.17 -1.17 6.40 -25.07 -0.16 -1.33 16 11 C 0.29 3.01 2.44 -25.61 -0.06 2.94 16 12 F -0.20 -2.52 17.04 2.25 0.04 -2.48 16 13 F -0.18 -2.30 14.77 2.25 0.03 -2.26 16 14 C -0.19 -3.28 4.71 -104.58 -0.49 -3.77 16 15 C -0.05 -0.99 9.00 -39.61 -0.36 -1.35 16 16 C -0.19 -4.21 9.99 -39.39 -0.39 -4.61 16 17 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 18 O -0.18 -5.15 9.76 0.04 0.00 -5.15 16 19 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 20 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 23 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 C -0.24 -5.15 9.17 -39.39 -0.36 -5.51 16 28 C -0.07 -1.20 9.66 -39.61 -0.38 -1.59 16 29 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.54 7.45 -51.93 -0.39 0.15 16 32 H 0.34 4.52 7.99 -39.29 -0.31 4.21 16 33 H 0.04 0.34 8.05 -51.93 -0.42 -0.08 16 34 H 0.08 0.79 6.92 -51.93 -0.36 0.43 16 35 H 0.08 0.41 7.85 -51.93 -0.41 0.00 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.60 8.12 -51.93 -0.42 0.18 16 40 H 0.09 0.60 8.11 -51.92 -0.42 0.18 16 41 H 0.12 2.02 7.72 -52.49 -0.41 1.62 16 42 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 45 H 0.10 1.63 8.03 -52.49 -0.42 1.21 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -31.08 370.37 -8.47 -39.54 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.61 Total: 6.40 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -2.73 Total: -23.44 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.24 Total: -33.82 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.07 Total: -4.75 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.08 -8.47 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390917024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.977 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds