Wall clock time and date at job start Tue Mar 31 2020 14:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00186 * 2 1 4 4 C 1.38761 * 120.04529 * 0.02562 * 3 2 1 5 5 C 1.38134 * 119.96614 * 179.70510 * 4 3 2 6 6 C 1.38268 * 120.07045 * 0.54476 * 5 4 3 7 7 C 1.50693 * 119.95242 * 179.72765 * 6 5 4 8 8 H 1.09000 * 109.47305 * 144.73058 * 7 6 5 9 9 C 1.53003 * 109.46915 * 264.72694 * 7 6 5 10 10 N 1.46901 * 109.47182 * 24.72480 * 7 6 5 11 11 C 1.46905 * 110.99870 * 155.00014 * 10 7 6 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 7 13 13 C 1.53001 * 109.47206 * 299.99787 * 12 11 10 14 14 C 1.53001 * 109.47323 * 60.00045 * 12 11 10 15 15 C 1.53004 * 109.47360 * 180.02562 * 12 11 10 16 16 C 1.50697 * 109.47387 * 179.97438 * 15 12 11 17 17 H 1.08000 * 120.00144 * 0.02562 * 16 15 12 18 18 C 1.37874 * 119.99821 * 179.97438 * 16 15 12 19 19 N 1.31510 * 120.00108 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99834 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46679 * 90.00592 * 20 18 16 22 22 H 1.48496 * 109.47358 * 209.99839 * 20 18 16 23 23 H 1.48495 * 109.47285 * 330.00458 * 20 18 16 24 24 C 1.38364 * 120.09405 * 359.45535 * 6 5 4 25 25 Cl 1.73596 * 119.98509 * 180.25357 * 24 6 5 26 26 C 1.38277 * 120.02912 * 0.26949 * 24 6 5 27 27 H 1.09000 * 109.47298 * 300.00028 * 1 2 3 28 28 H 1.08999 * 109.47376 * 59.99715 * 1 2 3 29 29 H 1.09001 * 109.47550 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.02149 * 0.02562 * 4 3 2 31 31 H 1.08010 * 119.96679 * 180.27253 * 5 4 3 32 32 H 1.08996 * 109.47234 * 60.00392 * 9 7 6 33 33 H 1.09007 * 109.47106 * 180.02562 * 9 7 6 34 34 H 1.08993 * 109.47190 * 299.99987 * 9 7 6 35 35 H 1.00901 * 111.00067 * 278.95190 * 10 7 6 36 36 H 1.09001 * 109.46798 * 300.00327 * 11 10 7 37 37 H 1.08998 * 109.46961 * 60.00043 * 11 10 7 38 38 H 1.08999 * 109.47049 * 60.00315 * 13 12 11 39 39 H 1.09005 * 109.47151 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47171 * 300.00432 * 13 12 11 41 41 H 1.08991 * 109.46963 * 60.00286 * 14 12 11 42 42 H 1.09005 * 109.47384 * 179.97438 * 14 12 11 43 43 H 1.08999 * 109.47105 * 299.99791 * 14 12 11 44 44 H 1.09001 * 109.46514 * 300.00105 * 15 12 11 45 45 H 1.08998 * 109.46924 * 59.99625 * 15 12 11 46 46 H 0.97004 * 119.99990 * 179.97438 * 19 18 16 47 47 H 1.08004 * 120.03640 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2912 2.3752 0.0005 5 6 1.9201 3.6051 0.0067 6 6 3.3008 3.6772 0.0009 7 6 3.9841 5.0204 0.0015 8 1 4.8992 4.9623 0.5908 9 6 4.3273 5.4185 -1.4354 10 7 3.0873 6.0257 0.5872 11 6 3.8503 7.1491 1.1476 12 6 2.8844 8.1727 1.7476 13 6 1.9450 8.6886 0.6557 14 6 2.0633 7.5106 2.8559 15 6 3.6790 9.3430 2.3307 16 6 2.7276 10.3516 2.9211 17 1 1.6627 10.1754 2.8845 18 6 3.2167 11.4989 3.5089 19 7 4.5135 11.7132 3.5539 20 14 2.0374 12.7495 4.2401 21 1 1.7902 12.4212 5.6672 22 1 2.6308 14.1070 4.1402 23 1 0.7536 12.7142 3.4945 24 6 4.0562 2.5180 0.0004 25 17 5.7896 2.6118 -0.0002 26 6 3.4309 1.2846 0.0000 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2126 2.3200 0.0014 31 1 1.3325 4.5114 0.0116 32 1 3.4122 5.4767 -2.0248 33 1 4.8219 6.3899 -1.4350 34 1 4.9926 4.6726 -1.8700 35 1 2.4139 6.3487 -0.0912 36 1 4.5193 6.7816 1.9258 37 1 4.4356 7.6204 0.3582 38 1 1.3789 7.8551 0.2399 39 1 1.2566 9.4176 1.0832 40 1 2.5300 9.1602 -0.1339 41 1 2.7325 7.1432 3.6337 42 1 1.3754 8.2401 3.2837 43 1 1.4971 6.6772 2.4401 44 1 4.3486 8.9758 3.1085 45 1 4.2637 9.8145 1.5409 46 1 4.8576 12.5206 3.9671 47 1 4.0203 0.3797 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424342023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:43 Heat of formation + Delta-G solvation = -52.642326 kcal Electronic energy + Delta-G solvation = -25497.057095 eV Core-core repulsion = 21897.651694 eV Total energy + Delta-G solvation = -3599.405401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.25649 -39.69614 -38.66269 -37.33013 -36.28964 -34.40841 -31.94341 -31.68648 -29.70051 -28.74960 -28.07930 -27.84725 -26.66038 -24.71769 -24.26886 -23.11482 -21.53447 -19.64388 -19.17106 -18.30962 -17.49943 -17.05895 -16.65647 -16.51875 -16.12093 -15.94927 -15.61996 -15.20743 -14.93764 -14.78637 -14.54689 -14.41767 -14.17180 -13.89288 -13.74658 -13.51033 -13.28876 -13.01876 -12.81669 -12.77317 -12.69472 -12.51914 -12.42366 -12.36241 -12.21690 -12.11144 -11.89495 -11.82275 -11.68170 -11.60017 -11.34650 -10.83230 -10.70913 -10.48896 -9.83924 -9.32919 -9.07463 -8.12320 -6.19102 0.14300 0.35671 1.06571 1.41875 1.42295 1.52724 2.41790 2.44859 2.61528 3.19608 3.21799 3.80469 3.82384 4.03972 4.14783 4.19498 4.23597 4.28980 4.36071 4.42796 4.44200 4.49371 4.52321 4.70114 4.74255 4.77254 4.85597 4.87994 4.95127 5.00129 5.11186 5.13021 5.21074 5.25453 5.26601 5.34058 5.44806 5.55295 5.57538 5.58351 5.62603 5.69606 5.91366 5.95491 6.10807 6.38213 6.39225 6.55972 6.96523 7.48203 9.00064 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.002658 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.397622 B =10531.685604 C =11472.370837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.127 3.873 4 C -0.200 4.200 5 C -0.048 4.048 6 C -0.101 4.101 7 C 0.124 3.876 8 H 0.077 0.923 9 C -0.171 4.171 10 N -0.671 5.671 11 C 0.085 3.915 12 C -0.052 4.052 13 C -0.122 4.122 14 C -0.106 4.106 15 C 0.039 3.961 16 C -0.511 4.511 17 H 0.067 0.933 18 C -0.006 4.006 19 N -0.939 5.939 20 Si 0.955 3.045 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C -0.005 4.005 25 Cl -0.066 7.066 26 C -0.157 4.157 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.348 0.652 36 H 0.051 0.949 37 H 0.022 0.978 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.036 0.964 41 H 0.025 0.975 42 H 0.038 0.962 43 H 0.071 0.929 44 H -0.019 1.019 45 H -0.016 1.016 46 H 0.259 0.741 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.809 -23.605 -11.480 27.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.081 3.919 4 C -0.218 4.218 5 C -0.066 4.066 6 C -0.103 4.103 7 C 0.014 3.986 8 H 0.095 0.905 9 C -0.229 4.229 10 N -0.303 5.303 11 C -0.044 4.044 12 C -0.053 4.053 13 C -0.179 4.179 14 C -0.164 4.164 15 C 0.001 3.999 16 C -0.549 4.549 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.580 5.580 20 Si 0.781 3.219 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.185 1.185 24 C -0.032 4.032 25 Cl -0.037 7.037 26 C -0.177 4.177 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.137 0.863 30 H 0.175 0.825 31 H 0.167 0.833 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.168 0.832 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.000 1.000 45 H 0.002 0.998 46 H 0.067 0.933 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.522 -23.996 -10.827 27.379 hybrid contribution 0.509 1.613 -0.064 1.692 sum -7.013 -22.384 -10.891 25.862 Atomic orbital electron populations 1.23386 0.76091 1.05715 1.02501 1.86041 1.23672 1.26314 1.88552 1.18860 0.91551 0.85123 0.96323 1.21605 1.01620 0.91432 1.07162 1.20923 0.92802 0.98236 0.94638 1.19611 0.94131 0.93111 1.03423 1.20324 0.94710 0.88736 0.94825 0.90528 1.22386 1.02635 1.01695 0.96211 1.60575 1.17046 1.13419 1.39229 1.21805 0.94980 0.90464 0.97179 1.20465 0.95384 0.93670 0.95766 1.21683 0.98756 1.00343 0.97103 1.21501 0.98793 0.99182 0.96889 1.19019 0.94382 0.92776 0.93718 1.21623 0.93868 1.03877 1.35553 0.91465 1.25926 0.96486 1.00617 0.97204 1.70114 1.13758 1.27636 1.46541 0.85588 0.79398 0.78061 0.78873 1.20263 1.21387 1.18480 1.20464 0.84538 0.93987 1.04258 1.98366 1.10030 1.98531 1.96763 1.20203 0.92447 0.97080 1.07942 0.91675 0.91340 0.86264 0.82549 0.83266 0.91203 0.92648 0.91589 0.83161 0.93030 0.96016 0.91062 0.93524 0.94447 0.95550 0.94308 0.91048 1.00048 0.99756 0.93250 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.78 10.50 -92.39 -0.97 -6.75 16 3 C 0.13 2.46 6.69 22.50 0.15 2.61 16 4 C -0.20 -3.39 9.04 22.37 0.20 -3.19 16 5 C -0.05 -0.92 9.31 22.25 0.21 -0.71 16 6 C -0.10 -2.25 5.06 -19.83 -0.10 -2.35 16 7 C 0.12 2.94 2.31 44.17 0.10 3.04 16 8 H 0.08 2.07 6.78 -2.39 -0.02 2.05 16 9 C -0.17 -3.57 9.14 71.98 0.66 -2.91 16 10 N -0.67 -17.18 4.45 -495.45 -2.21 -19.39 16 11 C 0.08 2.82 4.45 86.30 0.38 3.20 16 12 C -0.05 -2.02 0.60 -52.18 -0.03 -2.05 16 13 C -0.12 -4.15 7.89 71.98 0.57 -3.58 16 14 C -0.11 -3.93 8.07 71.98 0.58 -3.35 16 15 C 0.04 1.99 4.04 29.85 0.12 2.11 16 16 C -0.51 -28.08 7.65 25.60 0.20 -27.88 16 17 H 0.07 3.52 5.68 -2.91 -0.02 3.50 16 18 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 19 N -0.94 -57.65 13.29 21.45 0.28 -57.37 16 20 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 24 C -0.01 -0.12 6.31 22.31 0.14 0.02 16 25 Cl -0.07 -1.46 27.14 -2.72 -0.07 -1.53 16 26 C -0.16 -3.30 9.77 22.39 0.22 -3.08 16 27 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 28 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 29 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.16 1.79 6.30 -2.91 -0.02 1.77 16 31 H 0.15 2.57 6.88 -2.91 -0.02 2.55 16 32 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 33 H 0.05 1.25 7.46 -2.38 -0.02 1.23 16 34 H 0.07 1.33 7.89 -2.39 -0.02 1.31 16 35 H 0.35 7.84 5.94 -89.69 -0.53 7.30 16 36 H 0.05 1.87 8.06 -2.39 -0.02 1.85 16 37 H 0.02 0.74 7.44 -2.39 -0.02 0.72 16 38 H 0.07 1.87 6.57 -2.39 -0.02 1.86 16 39 H 0.05 1.76 6.62 -2.38 -0.02 1.74 16 40 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.04 1.53 6.62 -2.38 -0.02 1.51 16 43 H 0.07 2.21 7.60 -2.39 -0.02 2.20 16 44 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 45 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 46 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 47 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -65.42 382.18 4.46 -60.96 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.43 Total: 14.41 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 4.97 Total: -36.73 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -1.92 Total: -76.76 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.97 Total: -6.75 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.07 Total: -1.53 kcal Total: -65.42 4.46 -60.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424342023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.318 kcal (2) G-P(sol) polarization free energy of solvation -65.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds