Wall clock time and date at job start Tue Mar 31 2020 14:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99619 * 2 1 4 4 N 1.46903 * 109.46899 * 124.99925 * 3 2 1 5 5 C 1.46900 * 111.00090 * 293.24869 * 4 3 2 6 6 C 1.50700 * 109.47302 * 163.24169 * 5 4 3 7 7 H 1.07995 * 119.99638 * 355.09505 * 6 5 4 8 8 C 1.37877 * 119.99971 * 175.09057 * 6 5 4 9 9 N 1.31514 * 119.99970 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00059 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46932 * 89.99803 * 10 8 6 12 12 H 1.48502 * 109.46913 * 209.99815 * 10 8 6 13 13 H 1.48497 * 109.47172 * 329.99834 * 10 8 6 14 14 C 1.46898 * 111.00080 * 169.29167 * 4 3 2 15 15 C 1.50701 * 109.47111 * 293.95517 * 14 4 3 16 16 C 1.38271 * 119.94024 * 89.99917 * 15 14 4 17 17 C 1.38138 * 120.05207 * 180.02562 * 16 15 14 18 18 C 1.38748 * 119.94930 * 359.97438 * 17 16 15 19 19 O 1.35893 * 120.06165 * 179.71778 * 18 17 16 20 20 C 1.35676 * 117.99353 * 77.83035 * 19 18 17 21 21 C 1.39125 * 120.07079 * 184.61034 * 20 19 18 22 22 N 1.31966 * 119.91519 * 179.73179 * 21 20 19 23 23 C 1.32246 * 120.06338 * 0.54388 * 22 21 20 24 24 C 1.38197 * 120.15251 * 359.70632 * 23 22 21 25 25 N 1.32232 * 120.08139 * 0.02665 * 24 23 22 26 26 C 1.38756 * 119.87965 * 359.97438 * 18 17 16 27 27 C 1.38140 * 119.94411 * 359.97438 * 26 18 17 28 28 H 1.07996 * 120.00155 * 0.02562 * 1 2 3 29 29 H 1.08008 * 119.99784 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99664 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47402 * 5.00317 * 3 2 1 32 32 H 1.08995 * 109.47034 * 244.99548 * 3 2 1 33 33 H 1.09007 * 109.46964 * 283.24307 * 5 4 3 34 34 H 1.09003 * 109.47170 * 43.23995 * 5 4 3 35 35 H 0.96995 * 119.99914 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.47321 * 173.95283 * 14 4 3 37 37 H 1.09006 * 109.47003 * 53.95476 * 14 4 3 38 38 H 1.08002 * 119.97420 * 0.02562 * 16 15 14 39 39 H 1.08001 * 120.02672 * 179.97438 * 17 16 15 40 40 H 1.08003 * 120.04264 * 359.97438 * 21 20 19 41 41 H 1.08005 * 119.92415 * 179.69057 * 23 22 21 42 42 H 1.07989 * 119.95988 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.02557 * 179.97438 * 26 18 17 44 44 H 1.07995 * 119.97256 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 2.2710 1.3639 2.4117 6 6 3.2058 0.9806 3.5299 7 1 4.2129 0.6612 3.3062 8 6 2.7752 1.0378 4.8385 9 7 3.5911 0.7038 5.8144 10 14 1.0330 1.5898 5.2253 11 1 0.1319 0.4096 5.2411 12 1 1.0069 2.2505 6.5550 13 1 0.5754 2.5481 4.1873 14 6 3.9233 2.4664 1.0271 15 6 4.8191 2.2714 -0.1690 16 6 4.4384 2.7635 -1.4038 17 6 5.2575 2.5856 -2.5019 18 6 6.4633 1.9131 -2.3649 19 8 7.2682 1.7319 -3.4447 20 6 8.0173 2.7824 -3.8641 21 6 8.7830 2.6750 -5.0207 22 7 9.5064 3.7005 -5.4287 23 6 9.5122 4.8255 -4.7335 24 6 8.7567 4.9335 -3.5814 25 7 8.0256 3.9114 -3.1700 26 6 6.8434 1.4213 -1.1243 27 6 6.0212 1.6027 -0.0292 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4026 -0.9313 33 1 1.8878 2.3693 2.5869 34 1 1.4399 0.6596 2.3753 35 1 3.2881 0.7437 6.7349 36 1 4.5309 2.5260 1.9302 37 1 3.3558 3.3896 0.9094 38 1 3.4999 3.2873 -1.5099 39 1 4.9595 2.9698 -3.4663 40 1 8.7824 1.7548 -5.5860 41 1 10.1090 5.6618 -5.0668 42 1 8.7634 5.8538 -3.0164 43 1 7.7813 0.8971 -1.0151 44 1 6.3168 1.2205 0.9366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430098435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:28 Heat of formation + Delta-G solvation = 84.172719 kcal Electronic energy + Delta-G solvation = -26161.146239 eV Core-core repulsion = 22466.566089 eV Total energy + Delta-G solvation = -3694.580149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.71658 -40.03152 -38.45667 -36.73692 -34.41524 -33.30972 -32.53353 -31.53142 -30.96236 -30.27689 -27.86027 -26.36872 -25.05157 -24.50571 -23.41804 -22.74808 -21.48056 -20.32516 -19.28655 -19.11822 -18.25844 -17.16802 -16.88182 -16.49374 -16.14292 -15.52071 -15.25936 -15.01569 -14.87272 -14.53940 -14.10483 -13.82866 -13.62272 -13.40476 -13.30730 -13.16238 -13.00763 -12.39716 -12.25692 -12.15511 -11.89148 -11.62712 -11.42475 -11.35490 -11.08838 -10.85594 -10.62537 -10.44947 -10.42336 -9.94396 -9.59062 -9.36993 -9.15461 -9.04213 -8.82966 -8.58066 -8.45003 -7.45667 -6.07320 -4.04372 0.46228 0.76818 1.11654 1.46445 2.63094 2.74008 3.26764 3.33982 3.34184 3.35777 3.75889 3.82772 3.91970 4.17314 4.40009 4.72702 4.83924 4.88937 4.92969 4.97273 5.11861 5.12432 5.24751 5.38478 5.46551 5.49336 5.54378 5.56744 5.82552 5.91294 5.91937 6.00469 6.12396 6.26373 6.31519 6.37650 6.44454 6.77016 6.78149 6.82728 6.86824 6.94360 6.97589 7.08209 7.20516 7.45101 7.59335 7.83475 7.95800 8.62908 9.02064 9.54855 11.05727 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.002589 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.451540 B =10812.869295 C =11596.747671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.121 4.121 3 C 0.069 3.931 4 N -0.516 5.516 5 C 0.160 3.840 6 C -0.507 4.507 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.871 3.129 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.094 3.906 15 C -0.052 4.052 16 C -0.107 4.107 17 C -0.116 4.116 18 C 0.072 3.928 19 O -0.238 6.238 20 C 0.274 3.726 21 C 0.042 3.958 22 N -0.406 5.406 23 C 0.001 3.999 24 C 0.096 3.904 25 N -0.481 5.481 26 C -0.111 4.111 27 C -0.081 4.081 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.026 0.974 32 H 0.078 0.922 33 H -0.009 1.009 34 H 0.030 0.970 35 H 0.263 0.737 36 H 0.101 0.899 37 H 0.032 0.968 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.177 0.823 41 H 0.173 0.827 42 H 0.173 0.827 43 H 0.126 0.874 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.975 7.195 -20.703 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.139 4.139 3 C -0.059 4.059 4 N -0.240 5.240 5 C 0.034 3.966 6 C -0.545 4.545 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.033 4.033 15 C -0.052 4.052 16 C -0.126 4.126 17 C -0.135 4.135 18 C 0.030 3.970 19 O -0.142 6.142 20 C 0.093 3.907 21 C -0.121 4.121 22 N -0.121 5.121 23 C -0.157 4.157 24 C -0.063 4.063 25 N -0.209 5.209 26 C -0.130 4.130 27 C -0.100 4.100 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.009 0.991 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.050 0.950 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.194 0.806 41 H 0.190 0.810 42 H 0.191 0.809 43 H 0.144 0.856 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.224 6.486 -20.591 22.765 hybrid contribution -1.527 1.076 0.561 1.950 sum 5.696 7.561 -20.031 22.155 Atomic orbital electron populations 1.23715 0.95985 1.01239 1.03945 1.22896 0.95360 0.98937 0.96729 1.21372 0.94376 0.94191 0.95911 1.61960 1.18154 1.41364 1.02516 1.20261 0.94621 0.95123 0.86599 1.21019 1.00519 1.44260 0.88746 0.90051 1.24885 0.96977 0.95084 0.96298 1.69886 1.35528 1.48891 0.99577 0.86922 0.85911 0.79470 0.77841 1.20145 1.21222 1.19266 1.21052 0.94385 0.91804 0.96051 1.20145 0.94834 0.95314 0.94948 1.20915 0.99342 1.00471 0.91832 1.21077 0.94228 0.99078 0.99114 1.18445 0.90230 1.02809 0.85520 1.84694 1.52554 1.32075 1.44903 1.21297 0.90755 0.87188 0.91460 1.22910 0.95507 0.99727 0.93982 1.68480 1.15057 0.99360 1.29160 1.23611 1.00681 0.97017 0.94390 1.23609 0.91028 0.96985 0.94710 1.68227 1.21187 1.00212 1.31280 1.21134 1.00405 1.00759 0.90673 1.21030 0.93373 0.96930 0.98653 0.89240 0.88747 0.86973 0.95547 0.90421 0.99131 0.95190 0.92676 0.88041 0.94952 0.85816 0.86308 0.80561 0.81012 0.80949 0.85607 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.12 14.31 29.01 0.42 -2.71 16 2 C -0.12 -1.98 8.47 -36.03 -0.31 -2.29 16 3 C 0.07 1.17 5.19 -4.98 -0.03 1.14 16 4 N -0.52 -10.30 4.42 -238.96 -1.06 -11.35 16 5 C 0.16 3.76 3.70 -4.98 -0.02 3.74 16 6 C -0.51 -13.96 8.97 -34.44 -0.31 -14.27 16 7 H 0.08 2.43 8.00 -52.49 -0.42 2.01 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 10 Si 0.87 21.24 27.57 -169.99 -4.69 16.56 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.30 6.40 56.52 0.36 -5.94 16 14 C 0.09 1.69 4.96 -4.98 -0.02 1.67 16 15 C -0.05 -0.80 4.91 -104.60 -0.51 -1.32 16 16 C -0.11 -1.46 7.84 -39.61 -0.31 -1.77 16 17 C -0.12 -1.52 9.83 -39.43 -0.39 -1.91 16 18 C 0.07 0.98 5.06 -39.20 -0.20 0.78 16 19 O -0.24 -3.04 9.97 -2.91 -0.03 -3.07 16 20 C 0.27 3.15 7.41 -16.92 -0.13 3.02 16 21 C 0.04 0.40 11.18 -17.17 -0.19 0.21 16 22 N -0.41 -3.88 10.49 -12.92 -0.14 -4.01 16 23 C 0.00 0.01 11.21 -17.39 -0.19 -0.19 16 24 C 0.10 0.79 11.22 -17.39 -0.20 0.59 16 25 N -0.48 -5.58 9.43 -13.13 -0.12 -5.70 16 26 C -0.11 -1.55 9.99 -39.43 -0.39 -1.94 16 27 C -0.08 -1.23 9.69 -39.61 -0.38 -1.62 16 28 H 0.09 1.26 7.84 -52.49 -0.41 0.85 16 29 H 0.09 1.25 8.06 -52.48 -0.42 0.82 16 30 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.03 0.44 7.77 -51.93 -0.40 0.03 16 32 H 0.08 1.19 5.43 -51.93 -0.28 0.91 16 33 H -0.01 -0.22 6.75 -51.93 -0.35 -0.57 16 34 H 0.03 0.72 6.58 -51.93 -0.34 0.38 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.10 2.02 7.21 -51.93 -0.37 1.65 16 37 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 38 H 0.12 1.50 7.85 -52.49 -0.41 1.09 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.18 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 42 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -31.89 374.16 -8.85 -40.75 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.97 Total: 2.48 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -3.26 Total: -14.97 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.54 Total: -47.38 kcal Atomic # 8 Polarization: -3.04 SS G_CDS: -0.03 Total: -3.07 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.69 Total: 16.56 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.89 -8.85 -40.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430098435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.919 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds