Wall clock time and date at job start Tue Mar 31 2020 14:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99619 * 2 1 4 4 N 1.46903 * 109.46899 * 124.99925 * 3 2 1 5 5 C 1.46900 * 111.00090 * 293.24869 * 4 3 2 6 6 C 1.50700 * 109.47302 * 163.24169 * 5 4 3 7 7 H 1.07995 * 119.99638 * 355.09505 * 6 5 4 8 8 C 1.37877 * 119.99971 * 175.09057 * 6 5 4 9 9 N 1.31514 * 119.99970 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00059 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46932 * 89.99803 * 10 8 6 12 12 H 1.48502 * 109.46913 * 209.99815 * 10 8 6 13 13 H 1.48497 * 109.47172 * 329.99834 * 10 8 6 14 14 C 1.46898 * 111.00080 * 169.29167 * 4 3 2 15 15 C 1.50701 * 109.47111 * 293.95517 * 14 4 3 16 16 C 1.38271 * 119.94024 * 89.99917 * 15 14 4 17 17 C 1.38138 * 120.05207 * 180.02562 * 16 15 14 18 18 C 1.38748 * 119.94930 * 359.97438 * 17 16 15 19 19 O 1.35893 * 120.06165 * 179.71778 * 18 17 16 20 20 C 1.35676 * 117.99353 * 77.83035 * 19 18 17 21 21 C 1.39125 * 120.07079 * 184.61034 * 20 19 18 22 22 N 1.31966 * 119.91519 * 179.73179 * 21 20 19 23 23 C 1.32246 * 120.06338 * 0.54388 * 22 21 20 24 24 C 1.38197 * 120.15251 * 359.70632 * 23 22 21 25 25 N 1.32232 * 120.08139 * 0.02665 * 24 23 22 26 26 C 1.38756 * 119.87965 * 359.97438 * 18 17 16 27 27 C 1.38140 * 119.94411 * 359.97438 * 26 18 17 28 28 H 1.07996 * 120.00155 * 0.02562 * 1 2 3 29 29 H 1.08008 * 119.99784 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99664 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47402 * 5.00317 * 3 2 1 32 32 H 1.08995 * 109.47034 * 244.99548 * 3 2 1 33 33 H 1.09007 * 109.46964 * 283.24307 * 5 4 3 34 34 H 1.09003 * 109.47170 * 43.23995 * 5 4 3 35 35 H 0.96995 * 119.99914 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.47321 * 173.95283 * 14 4 3 37 37 H 1.09006 * 109.47003 * 53.95476 * 14 4 3 38 38 H 1.08002 * 119.97420 * 0.02562 * 16 15 14 39 39 H 1.08001 * 120.02672 * 179.97438 * 17 16 15 40 40 H 1.08003 * 120.04264 * 359.97438 * 21 20 19 41 41 H 1.08005 * 119.92415 * 179.69057 * 23 22 21 42 42 H 1.07989 * 119.95988 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.02557 * 179.97438 * 26 18 17 44 44 H 1.07995 * 119.97256 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 2.2710 1.3639 2.4117 6 6 3.2058 0.9806 3.5299 7 1 4.2129 0.6612 3.3062 8 6 2.7752 1.0378 4.8385 9 7 3.5911 0.7038 5.8144 10 14 1.0330 1.5898 5.2253 11 1 0.1319 0.4096 5.2411 12 1 1.0069 2.2505 6.5550 13 1 0.5754 2.5481 4.1873 14 6 3.9233 2.4664 1.0271 15 6 4.8191 2.2714 -0.1690 16 6 4.4384 2.7635 -1.4038 17 6 5.2575 2.5856 -2.5019 18 6 6.4633 1.9131 -2.3649 19 8 7.2682 1.7319 -3.4447 20 6 8.0173 2.7824 -3.8641 21 6 8.7830 2.6750 -5.0207 22 7 9.5064 3.7005 -5.4287 23 6 9.5122 4.8255 -4.7335 24 6 8.7567 4.9335 -3.5814 25 7 8.0256 3.9114 -3.1700 26 6 6.8434 1.4213 -1.1243 27 6 6.0212 1.6027 -0.0292 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4026 -0.9313 33 1 1.8878 2.3693 2.5869 34 1 1.4399 0.6596 2.3753 35 1 3.2881 0.7437 6.7349 36 1 4.5309 2.5260 1.9302 37 1 3.3558 3.3896 0.9094 38 1 3.4999 3.2873 -1.5099 39 1 4.9595 2.9698 -3.4663 40 1 8.7824 1.7548 -5.5860 41 1 10.1090 5.6618 -5.0668 42 1 8.7634 5.8538 -3.0164 43 1 7.7813 0.8971 -1.0151 44 1 6.3168 1.2205 0.9366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430098435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:27 Heat of formation + Delta-G solvation = 62.887915 kcal Electronic energy + Delta-G solvation = -26162.069217 eV Core-core repulsion = 22466.566089 eV Total energy + Delta-G solvation = -3695.503128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.49714 -41.00003 -39.62130 -38.06140 -35.14390 -34.93498 -34.23407 -32.54363 -32.06380 -31.41885 -29.61941 -27.54333 -25.99191 -25.39304 -24.83151 -23.85728 -22.84598 -21.77408 -20.58114 -20.06419 -19.01086 -18.96001 -17.78790 -17.51809 -17.22409 -16.87462 -16.53452 -16.19831 -15.78675 -15.65726 -15.52477 -15.21555 -15.02294 -14.66634 -14.47654 -14.25705 -14.01524 -13.92222 -13.80336 -13.28324 -12.97412 -12.90570 -12.67963 -12.63608 -12.32629 -12.25270 -12.12429 -11.89656 -11.85081 -11.75855 -11.46518 -10.77380 -10.30380 -10.24737 -9.96525 -9.88688 -9.58267 -9.01176 -8.26232 -6.28391 -0.21700 -0.00140 0.08419 0.35998 1.35130 1.35587 1.41899 1.46124 1.81263 2.35006 2.65334 2.70768 3.04403 3.07470 3.33852 3.41171 3.48097 3.81028 3.85399 3.90976 4.11877 4.18482 4.24772 4.26249 4.31811 4.38202 4.52028 4.59106 4.62743 4.64878 4.71388 4.80167 4.94839 4.98192 5.07954 5.13632 5.16566 5.26950 5.31055 5.57029 5.65228 5.71647 5.75451 5.81009 6.06566 6.17913 6.28276 6.35693 6.66091 6.71348 6.78234 7.34944 8.90374 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.002589 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.451540 B =10812.869295 C =11596.747671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C 0.074 3.926 4 N -0.533 5.533 5 C 0.173 3.827 6 C -0.509 4.509 7 H 0.039 0.961 8 C 0.009 3.991 9 N -0.948 5.948 10 Si 0.941 3.059 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.250 1.250 14 C 0.101 3.899 15 C -0.065 4.065 16 C -0.098 4.098 17 C -0.113 4.113 18 C 0.077 3.923 19 O -0.247 6.247 20 C 0.249 3.751 21 C 0.042 3.958 22 N -0.423 5.423 23 C 0.016 3.984 24 C 0.092 3.908 25 N -0.509 5.509 26 C -0.117 4.117 27 C -0.094 4.094 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.036 0.964 32 H 0.093 0.907 33 H -0.009 1.009 34 H 0.031 0.969 35 H 0.265 0.735 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.194 0.806 41 H 0.210 0.790 42 H 0.203 0.797 43 H 0.134 0.866 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 8.957 -23.159 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.169 4.169 3 C -0.053 4.053 4 N -0.257 5.257 5 C 0.046 3.954 6 C -0.547 4.547 7 H 0.057 0.943 8 C -0.188 4.188 9 N -0.589 5.589 10 Si 0.765 3.235 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.174 1.174 14 C -0.026 4.026 15 C -0.066 4.066 16 C -0.117 4.117 17 C -0.132 4.132 18 C 0.035 3.965 19 O -0.152 6.152 20 C 0.070 3.930 21 C -0.119 4.119 22 N -0.138 5.138 23 C -0.143 4.143 24 C -0.067 4.067 25 N -0.237 5.237 26 C -0.135 4.135 27 C -0.113 4.113 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.055 0.945 32 H 0.111 0.889 33 H 0.008 0.992 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.211 0.789 41 H 0.227 0.773 42 H 0.220 0.780 43 H 0.152 0.848 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.898 8.239 -23.089 25.214 hybrid contribution -0.928 0.582 1.199 1.624 sum 4.970 8.822 -21.890 24.118 Atomic orbital electron populations 1.23959 0.95374 1.02620 1.00985 1.22890 0.96136 0.98401 0.99455 1.21405 0.94128 0.94852 0.94959 1.61815 1.18939 1.42717 1.02186 1.19956 0.93688 0.94626 0.87095 1.21245 0.99548 1.43460 0.90489 0.94298 1.25790 1.01674 0.95285 0.96065 1.70046 1.37998 1.50765 1.00109 0.85810 0.80180 0.79545 0.78007 1.19233 1.20884 1.17351 1.20895 0.94086 0.91742 0.95872 1.19929 0.94691 0.97052 0.94932 1.21028 1.00012 0.99750 0.90863 1.21266 0.93727 0.98499 0.99695 1.18540 0.90601 1.01794 0.85559 1.84639 1.52987 1.33105 1.44481 1.21413 0.91907 0.87217 0.92500 1.23162 0.94847 1.00520 0.93420 1.68575 1.15392 1.00041 1.29774 1.24251 0.99529 0.97160 0.93345 1.24178 0.90241 0.97132 0.95191 1.68177 1.22399 1.01002 1.32121 1.21193 1.00581 1.01097 0.90673 1.20953 0.94061 0.97707 0.98542 0.88060 0.87110 0.87934 0.94549 0.88949 0.99159 0.95121 0.92557 0.91442 0.93699 0.83802 0.84411 0.78934 0.77326 0.77987 0.84775 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.15 14.31 67.78 0.97 -4.18 16 2 C -0.15 -4.72 8.47 25.64 0.22 -4.51 16 3 C 0.07 2.37 5.19 85.56 0.44 2.82 16 4 N -0.53 -21.44 4.42 -909.93 -4.02 -25.47 16 5 C 0.17 8.15 3.70 85.56 0.32 8.47 16 6 C -0.51 -29.09 8.97 25.60 0.23 -28.86 16 7 H 0.04 2.49 8.00 -2.91 -0.02 2.46 16 8 C 0.01 0.52 5.47 84.65 0.46 0.98 16 9 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16 10 Si 0.94 43.81 27.57 68.60 1.89 45.70 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.25 -10.81 6.40 99.48 0.64 -10.18 16 14 C 0.10 3.73 4.96 85.56 0.42 4.15 16 15 C -0.07 -2.06 4.91 -19.85 -0.10 -2.15 16 16 C -0.10 -2.54 7.84 22.25 0.17 -2.36 16 17 C -0.11 -2.80 9.83 22.37 0.22 -2.58 16 18 C 0.08 2.07 5.06 22.52 0.11 2.19 16 19 O -0.25 -6.16 9.97 -33.31 -0.33 -6.50 16 20 C 0.25 5.49 7.41 84.80 0.63 6.12 16 21 C 0.04 0.75 11.18 84.89 0.95 1.70 16 22 N -0.42 -7.18 10.49 -194.79 -2.04 -9.22 16 23 C 0.02 0.19 11.21 84.62 0.95 1.14 16 24 C 0.09 1.29 11.22 84.62 0.95 2.24 16 25 N -0.51 -11.11 9.43 -308.17 -2.91 -14.02 16 26 C -0.12 -3.33 9.99 22.37 0.22 -3.11 16 27 C -0.09 -3.00 9.69 22.25 0.22 -2.79 16 28 H 0.10 2.49 7.84 -2.91 -0.02 2.47 16 29 H 0.11 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.10 3.38 8.06 -2.91 -0.02 3.35 16 31 H 0.04 1.11 7.77 -2.39 -0.02 1.09 16 32 H 0.09 2.68 5.43 -2.39 -0.01 2.66 16 33 H -0.01 -0.43 6.75 -2.38 -0.02 -0.45 16 34 H 0.03 1.45 6.58 -2.39 -0.02 1.43 16 35 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.07 2.89 7.21 -2.38 -0.02 2.87 16 37 H 0.04 1.51 8.06 -2.38 -0.02 1.49 16 38 H 0.14 3.11 7.85 -2.91 -0.02 3.08 16 39 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.19 2.55 8.06 -2.91 -0.02 2.52 16 41 H 0.21 0.81 8.06 -2.91 -0.02 0.79 16 42 H 0.20 1.42 8.06 -2.92 -0.02 1.40 16 43 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 44 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -71.18 374.16 1.20 -69.98 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.92 Total: 19.09 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 7.39 Total: -20.74 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -8.67 Total: -107.54 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.33 Total: -6.50 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.89 Total: 45.70 kcal Total: -71.18 1.20 -69.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430098435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.873 kcal (2) G-P(sol) polarization free energy of solvation -71.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds