Wall clock time and date at job start Tue Mar 31 2020 13:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46907 * 2 1 4 4 H 1.09007 * 109.46880 * 304.87684 * 3 2 1 5 5 N 1.46904 * 109.47124 * 64.87185 * 3 2 1 6 6 C 1.46898 * 111.00428 * 255.30908 * 5 3 2 7 7 C 1.52998 * 109.47173 * 272.15410 * 6 5 3 8 8 C 1.50706 * 115.54790 * 155.07027 * 7 6 5 9 9 H 1.08002 * 119.99496 * 144.23325 * 8 7 6 10 10 C 1.37878 * 120.00172 * 324.23595 * 8 7 6 11 11 N 1.31510 * 119.99717 * 338.32705 * 10 8 7 12 12 Si 1.86799 * 120.00081 * 158.32352 * 10 8 7 13 13 H 1.48503 * 109.46848 * 89.99739 * 12 10 8 14 14 H 1.48498 * 109.47104 * 210.00068 * 12 10 8 15 15 H 1.48506 * 109.47015 * 329.99774 * 12 10 8 16 16 C 1.52997 * 117.50063 * 9.36528 * 7 6 5 17 17 C 1.52994 * 60.00035 * 252.50686 * 16 7 6 18 18 C 1.50698 * 109.47288 * 184.87739 * 3 2 1 19 19 C 1.38262 * 119.94050 * 280.23763 * 18 3 2 20 20 C 1.38146 * 120.05457 * 179.72499 * 19 18 3 21 21 C 1.38733 * 119.94415 * 0.54576 * 20 19 18 22 22 O 1.35901 * 120.06082 * 179.74852 * 21 20 19 23 23 C 1.42894 * 116.99664 * 359.97438 * 22 21 20 24 24 F 1.39902 * 109.47295 * 299.99696 * 23 22 21 25 25 F 1.39902 * 109.47505 * 59.99884 * 23 22 21 26 26 C 1.38739 * 119.88359 * 359.72919 * 21 20 19 27 27 C 1.38134 * 119.94704 * 359.97438 * 26 21 20 28 28 H 1.08995 * 109.47426 * 61.52612 * 1 2 3 29 29 H 1.08994 * 109.46867 * 301.52004 * 1 2 3 30 30 H 1.09007 * 109.46519 * 181.52095 * 1 2 3 31 31 H 1.08997 * 109.46845 * 119.99574 * 2 1 3 32 32 H 1.09001 * 109.47074 * 240.00162 * 2 1 3 33 33 H 1.00899 * 111.00065 * 19.26947 * 5 3 2 34 34 H 1.08996 * 109.47055 * 32.15585 * 6 5 3 35 35 H 1.08998 * 109.47108 * 152.15216 * 6 5 3 36 36 H 0.97006 * 119.99700 * 185.00123 * 11 10 8 37 37 H 1.08996 * 117.49930 * 359.97438 * 16 7 6 38 38 H 1.08999 * 117.49768 * 145.01605 * 16 7 6 39 39 H 1.09000 * 117.50209 * 252.50655 * 17 16 7 40 40 H 1.09003 * 117.51793 * 107.47623 * 17 16 7 41 41 H 1.08000 * 119.97489 * 0.02562 * 19 18 3 42 42 H 1.08006 * 120.03120 * 180.27324 * 20 19 18 43 43 H 1.09002 * 109.47518 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.02081 * 179.97438 * 26 21 20 45 45 H 1.07999 * 119.97444 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9809 -0.8431 5 7 1.6487 2.1002 1.2539 6 6 0.5318 3.0290 1.0351 7 6 1.0800 4.4019 0.6409 8 6 0.1446 5.2693 -0.1615 9 1 0.1363 6.3386 -0.0101 10 6 -0.7007 4.6977 -1.0888 11 7 -0.4247 3.5126 -1.5876 12 14 -2.2381 5.6066 -1.6364 13 1 -1.9198 6.4518 -2.8153 14 1 -3.2904 4.6244 -2.0010 15 1 -2.7260 6.4664 -0.5282 16 6 2.5757 4.5044 0.3356 17 6 2.0166 5.0992 1.6296 18 6 3.5422 1.4443 -0.1208 19 6 4.3243 1.1989 0.9926 20 6 5.7014 1.1944 0.8834 21 6 6.2997 1.4476 -0.3424 22 8 7.6543 1.4487 -0.4515 23 6 8.4010 1.1820 0.7373 24 9 8.1008 2.1485 1.7033 25 9 8.0643 -0.0852 1.2251 26 6 5.5126 1.6992 -1.4569 27 6 4.1359 1.6965 -1.3437 28 1 -0.3634 0.4899 -0.9033 29 1 -0.3633 0.5372 0.8760 30 1 -0.3632 -1.0274 0.0273 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.4197 1.4198 1.9629 34 1 -0.1054 2.6492 0.2365 35 1 -0.0502 3.1198 1.9522 36 1 -0.9788 3.1420 -2.2923 37 1 3.1693 3.5938 0.4160 38 1 2.8834 5.1991 -0.4459 39 1 1.9565 6.1853 1.6995 40 1 2.2419 4.5799 2.5611 41 1 3.8582 1.0057 1.9475 42 1 6.3119 0.9982 1.7525 43 1 9.4669 1.2125 0.5114 44 1 5.9761 1.8970 -2.4122 45 1 3.5229 1.8919 -2.2111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430742485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:24 Heat of formation + Delta-G solvation = -104.308510 kcal Electronic energy + Delta-G solvation = -28827.664170 eV Core-core repulsion = 24674.221675 eV Total energy + Delta-G solvation = -4153.442495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.25088 -48.25576 -41.06956 -39.65502 -38.18595 -36.50012 -34.15147 -32.30550 -31.89927 -31.48162 -28.03685 -27.50175 -26.30354 -24.92133 -23.76683 -23.10792 -22.62827 -21.29734 -20.45600 -19.91911 -19.02768 -18.82244 -18.03772 -17.12418 -16.82411 -16.67958 -16.34318 -16.08092 -15.56122 -15.32453 -15.27791 -14.98555 -14.88027 -14.64999 -14.58536 -14.34343 -14.12958 -13.78199 -13.71667 -13.46686 -13.32328 -13.03120 -12.93960 -12.79701 -12.65638 -12.55547 -12.13544 -11.99121 -11.85905 -11.81420 -11.57562 -11.51247 -11.10268 -10.96717 -10.40858 -9.89392 -9.75778 -9.11652 -8.96240 -8.04361 -6.04377 0.40988 0.48437 1.40477 1.46033 1.55383 1.71545 2.45302 2.61980 2.79957 3.01823 3.56929 3.57596 3.75440 3.84710 3.93530 3.95625 4.01635 4.23854 4.34352 4.43947 4.54321 4.56464 4.60000 4.74930 4.77384 4.92545 4.95197 5.00393 5.10601 5.11247 5.16076 5.21394 5.27348 5.31913 5.42413 5.44998 5.51784 5.64435 5.65274 5.69228 5.81851 5.84918 6.08911 6.19057 6.37668 6.63857 6.89773 6.96432 7.49716 8.93527 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.003583 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.350577 B = 7812.522649 C = 8306.379952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.127 3.873 4 H 0.080 0.920 5 N -0.675 5.675 6 C 0.090 3.910 7 C 0.038 3.962 8 C -0.527 4.527 9 H 0.039 0.961 10 C 0.045 3.955 11 N -0.874 5.874 12 Si 0.936 3.064 13 H -0.283 1.283 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.188 4.188 17 C -0.198 4.198 18 C -0.078 4.078 19 C -0.066 4.066 20 C -0.198 4.198 21 C 0.083 3.917 22 O -0.329 6.329 23 C 0.404 3.596 24 F -0.213 7.213 25 F -0.210 7.210 26 C -0.140 4.140 27 C -0.093 4.093 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.335 0.665 34 H 0.085 0.915 35 H 0.033 0.967 36 H 0.262 0.738 37 H 0.105 0.895 38 H 0.033 0.967 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.236 0.764 44 H 0.144 0.856 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.785 -10.992 3.025 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.017 3.983 4 H 0.098 0.902 5 N -0.304 5.304 6 C -0.039 4.039 7 C 0.037 3.963 8 C -0.564 4.564 9 H 0.057 0.943 10 C -0.157 4.157 11 N -0.510 5.510 12 Si 0.762 3.238 13 H -0.209 1.209 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.225 4.225 17 C -0.235 4.235 18 C -0.079 4.079 19 C -0.084 4.084 20 C -0.216 4.216 21 C 0.040 3.960 22 O -0.247 6.247 23 C 0.315 3.685 24 F -0.195 7.195 25 F -0.192 7.192 26 C -0.158 4.158 27 C -0.111 4.111 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.153 0.847 34 H 0.103 0.897 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.251 0.749 44 H 0.162 0.838 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.225 -10.648 2.778 17.984 hybrid contribution -1.630 0.388 -0.204 1.688 sum 12.594 -10.259 2.575 16.447 Atomic orbital electron populations 1.21714 0.95637 1.01339 1.01414 1.22006 0.95969 0.96047 1.02577 1.20527 0.90081 0.93792 0.93922 0.90198 1.60311 1.40859 1.20803 1.08474 1.21551 0.91555 0.91720 0.99065 1.19079 0.87914 0.93589 0.95758 1.20745 1.20885 0.92565 1.22231 0.94295 1.25381 0.99118 0.95818 0.95414 1.69970 1.38242 1.18279 1.24517 0.85924 0.80963 0.78855 0.78044 1.20900 1.20226 1.20167 1.22922 1.01968 1.01429 0.96226 1.22718 1.09959 0.97187 0.93685 1.19982 0.95995 0.98848 0.93073 1.20816 0.92017 0.96801 0.98757 1.21567 0.96733 1.06853 0.96466 1.18893 0.81531 1.00530 0.95044 1.86563 1.16679 1.86260 1.35216 1.24273 0.98586 0.71011 0.74609 1.93081 1.95145 1.64886 1.66371 1.93067 1.94481 1.43016 1.88644 1.20497 0.92577 1.04865 0.97880 1.20999 0.93847 0.98273 0.97996 0.93982 0.93667 0.91484 0.90757 0.91603 0.84695 0.89717 0.94845 0.92792 0.87739 0.94777 0.92640 0.90036 0.84840 0.84834 0.74883 0.83800 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.99 71.99 0.65 -3.62 16 2 C -0.13 -3.67 5.21 30.60 0.16 -3.51 16 3 C 0.13 4.42 1.56 44.17 0.07 4.49 16 4 H 0.08 3.47 6.85 -2.38 -0.02 3.46 16 5 N -0.67 -24.25 4.14 -495.45 -2.05 -26.29 16 6 C 0.09 3.94 4.80 86.30 0.41 4.35 16 7 C 0.04 1.87 2.31 -52.93 -0.12 1.75 16 8 C -0.53 -29.04 8.98 25.60 0.23 -28.81 16 9 H 0.04 2.22 7.91 -2.91 -0.02 2.20 16 10 C 0.05 2.37 5.00 84.66 0.42 2.79 16 11 N -0.87 -45.07 10.74 21.45 0.23 -44.84 16 12 Si 0.94 41.93 29.59 68.60 2.03 43.97 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 C -0.19 -9.05 9.24 30.59 0.28 -8.76 16 17 C -0.20 -9.19 9.87 30.59 0.30 -8.89 16 18 C -0.08 -2.58 2.89 -19.85 -0.06 -2.64 16 19 C -0.07 -2.02 9.21 22.25 0.20 -1.81 16 20 C -0.20 -5.78 8.26 22.37 0.18 -5.60 16 21 C 0.08 2.39 6.48 22.51 0.15 2.54 16 22 O -0.33 -7.71 10.43 -92.43 -0.96 -8.68 16 23 C 0.40 6.68 5.98 113.37 0.68 7.36 16 24 F -0.21 -4.63 15.58 44.97 0.70 -3.92 16 25 F -0.21 -4.15 15.58 44.97 0.70 -3.45 16 26 C -0.14 -4.12 9.99 22.37 0.22 -3.90 16 27 C -0.09 -3.03 9.63 22.25 0.21 -2.81 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.04 1.39 6.56 -2.39 -0.02 1.38 16 30 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.07 1.87 8.05 -2.39 -0.02 1.85 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.33 10.38 7.88 -89.69 -0.71 9.67 16 34 H 0.09 4.00 3.84 -2.39 -0.01 3.99 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.26 12.93 8.32 -92.70 -0.77 12.16 16 37 H 0.10 4.73 4.15 -2.39 -0.01 4.72 16 38 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 41 H 0.13 3.81 7.72 -2.91 -0.02 3.78 16 42 H 0.13 3.60 5.10 -2.91 -0.01 3.59 16 43 H 0.24 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 45 H 0.13 4.15 8.03 -2.91 -0.02 4.13 16 Total: -1.00 -60.66 363.38 4.96 -55.70 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.31 Total: 34.60 kcal Atomic # 6 Polarization: -51.08 SS G_CDS: 4.00 Total: -47.08 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -1.82 Total: -71.13 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.96 Total: -8.68 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 1.40 Total: -7.38 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.97 kcal Total: -60.66 4.96 -55.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430742485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.610 kcal (2) G-P(sol) polarization free energy of solvation -60.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds