Wall clock time and date at job start Tue Mar 31 2020 14:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47328 * 2 1 4 4 C 1.53002 * 109.47088 * 119.99882 * 2 1 3 5 5 C 1.52995 * 117.50123 * 300.00341 * 4 2 1 6 6 C 1.53002 * 60.00240 * 252.50943 * 5 4 2 7 7 N 1.46499 * 109.47665 * 240.00010 * 2 1 3 8 8 C 1.35816 * 126.04874 * 324.71808 * 7 2 1 9 9 C 1.35793 * 107.55770 * 179.89483 * 8 7 2 10 10 N 1.40657 * 126.08874 * 180.09890 * 9 8 7 11 11 C 1.34775 * 119.99881 * 180.28567 * 10 9 8 12 12 O 1.21615 * 120.00525 * 0.02562 * 11 10 9 13 13 C 1.47609 * 119.99319 * 180.02562 * 11 10 9 14 14 C 1.40022 * 119.90001 * 359.72142 * 13 11 10 15 15 C 1.36303 * 120.10755 * 179.75677 * 14 13 11 16 16 C 1.40898 * 119.89028 * 0.52354 * 15 14 13 17 17 C 1.41092 * 120.10445 * 179.71675 * 16 15 14 18 18 H 1.08003 * 120.00145 * 205.08457 * 17 16 15 19 19 C 1.40223 * 120.00048 * 25.07765 * 17 16 15 20 20 N 1.30643 * 119.99753 * 18.02979 * 19 17 16 21 21 Si 1.86802 * 120.00166 * 198.02330 * 19 17 16 22 22 H 1.48497 * 109.47081 * 94.52837 * 21 19 17 23 23 H 1.48496 * 109.47066 * 214.53053 * 21 19 17 24 24 H 1.48505 * 109.46956 * 334.53000 * 21 19 17 25 25 C 1.40901 * 119.79667 * 359.73068 * 16 15 14 26 26 C 1.36303 * 119.88900 * 0.02562 * 25 16 15 27 27 C 1.40281 * 107.82680 * 0.36459 * 9 8 7 28 28 N 1.30814 * 108.33261 * 359.77205 * 27 9 8 29 29 H 1.09011 * 109.47259 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47378 * 299.99906 * 1 2 3 31 31 H 1.09000 * 109.47527 * 60.00429 * 1 2 3 32 32 H 1.09005 * 115.56095 * 85.69466 * 4 2 1 33 33 H 1.09004 * 117.50041 * 145.02151 * 5 4 2 34 34 H 1.09001 * 117.49723 * 359.97438 * 5 4 2 35 35 H 1.08993 * 117.49983 * 107.48398 * 6 5 4 36 36 H 1.09000 * 117.49870 * 252.51189 * 6 5 4 37 37 H 1.08006 * 126.21718 * 0.03116 * 8 7 2 38 38 H 0.97002 * 119.99764 * 0.28627 * 10 9 8 39 39 H 1.08002 * 119.94697 * 0.02562 * 14 13 11 40 40 H 1.07998 * 120.05604 * 180.23493 * 15 14 13 41 41 H 0.97000 * 120.00221 * 180.02562 * 20 19 17 42 42 H 1.07995 * 120.05561 * 179.97438 * 25 16 15 43 43 H 1.08003 * 119.94758 * 179.97438 * 26 25 16 44 44 H 1.07996 * 125.83256 * 179.77556 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6356 -0.1496 2.6096 6 6 3.0741 0.0052 2.1118 7 7 2.0184 -0.6906 -1.1961 8 6 1.4398 -1.7661 -1.7904 9 6 2.1993 -2.0976 -2.8661 10 7 1.9526 -3.1550 -3.7603 11 6 2.7947 -3.3782 -4.7886 12 8 3.7681 -2.6658 -4.9432 13 6 2.5353 -4.4875 -5.7273 14 6 1.4171 -5.3100 -5.5439 15 6 1.1709 -6.3325 -6.4109 16 6 2.0498 -6.5679 -7.4867 17 6 1.8025 -7.6287 -8.3835 18 1 2.6191 -8.0722 -8.9338 19 6 0.4963 -8.1074 -8.5602 20 7 -0.5223 -7.3779 -8.1901 21 14 0.2129 -9.7881 -9.3248 22 1 0.0711 -10.8032 -8.2503 23 1 -1.0259 -9.7570 -10.1431 24 1 1.3683 -10.1400 -10.1888 25 6 3.1766 -5.7409 -7.6641 26 6 3.4119 -4.7178 -6.7948 27 6 3.2772 -1.2017 -2.9232 28 7 3.1680 -0.3624 -1.9259 29 1 -0.3634 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.1271 -1.8045 1.1643 33 1 1.4568 -0.8567 3.4197 34 1 1.0066 0.7406 2.6146 35 1 3.3910 0.9969 1.7891 36 1 3.8415 -0.6001 2.5942 37 1 0.5381 -2.2653 -1.4674 38 1 1.1764 -3.7234 -3.6368 39 1 0.7462 -5.1314 -4.7166 40 1 0.3061 -6.9640 -6.2709 41 1 -1.4258 -7.7091 -8.3119 42 1 3.8533 -5.9178 -8.4870 43 1 4.2756 -4.0835 -6.9296 44 1 4.0630 -1.2044 -3.6641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491066189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:12 Heat of formation + Delta-G solvation = 83.094525 kcal Electronic energy + Delta-G solvation = -25737.598027 eV Core-core repulsion = 22042.971123 eV Total energy + Delta-G solvation = -3694.626903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.17935 -39.10505 -38.10757 -37.11465 -34.32638 -33.93024 -33.31388 -30.43771 -29.59817 -29.46424 -28.50105 -25.97864 -24.62839 -22.66350 -22.47770 -21.85423 -21.15000 -20.73673 -19.97556 -19.29202 -17.61800 -17.46973 -16.77145 -15.80256 -15.55193 -15.39065 -15.23510 -14.51371 -14.13891 -14.04205 -13.99281 -13.64831 -13.42340 -13.24677 -12.81710 -12.74969 -12.59589 -12.30768 -12.15355 -11.97364 -11.80940 -11.51474 -11.39448 -11.32610 -10.99964 -10.85736 -10.71643 -10.65347 -10.39448 -10.27757 -10.06530 -9.59809 -9.40300 -9.19431 -8.98820 -7.78852 -7.65672 -7.32359 -7.07981 -4.64398 1.87890 2.21137 2.43232 2.85910 2.92859 2.96393 2.99837 3.11686 3.39949 3.71085 3.76469 3.91871 4.19786 4.41867 4.54506 4.56052 4.70787 4.80075 4.81115 4.99827 5.17493 5.25132 5.28944 5.49597 5.52711 5.53358 5.66845 5.71028 5.73520 5.79160 5.90796 5.96951 6.08401 6.28299 6.57658 6.73303 6.78896 6.97956 7.08060 7.09489 7.29598 7.39556 7.60036 7.73551 7.81785 7.87310 8.02813 8.17805 8.35391 8.58635 8.70607 8.98905 9.83919 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.002150 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.175366 B =13018.948420 C =13720.211733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.200 3.800 3 H 0.099 0.901 4 C -0.170 4.170 5 C -0.170 4.170 6 C -0.172 4.172 7 N -0.370 5.370 8 C -0.003 4.003 9 C 0.025 3.975 10 N -0.655 5.655 11 C 0.574 3.426 12 O -0.563 6.563 13 C -0.283 4.283 14 C -0.063 4.063 15 C -0.177 4.177 16 C 0.129 3.871 17 C -0.440 4.440 18 H 0.086 0.914 19 C 0.074 3.926 20 N -0.770 5.770 21 Si 0.914 3.086 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.258 1.258 25 C -0.238 4.238 26 C -0.019 4.019 27 C 0.050 3.950 28 N -0.290 5.290 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.170 0.830 38 H 0.406 0.594 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.287 0.713 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.143 8.404 16.109 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.098 3.902 3 H 0.117 0.883 4 C -0.190 4.190 5 C -0.208 4.208 6 C -0.209 4.209 7 N -0.156 5.156 8 C -0.149 4.149 9 C -0.080 4.080 10 N -0.300 5.300 11 C 0.370 3.630 12 O -0.444 6.444 13 C -0.288 4.288 14 C -0.082 4.082 15 C -0.197 4.197 16 C 0.126 3.874 17 C -0.468 4.468 18 H 0.104 0.896 19 C -0.148 4.148 20 N -0.393 5.393 21 Si 0.738 3.262 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.182 1.182 25 C -0.258 4.258 26 C -0.038 4.038 27 C -0.138 4.138 28 N -0.111 5.111 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.187 0.813 38 H 0.242 0.758 39 H 0.107 0.893 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.270 9.940 16.627 19.504 hybrid contribution -1.164 -1.849 -0.659 2.282 sum -3.434 8.091 15.968 18.227 Atomic orbital electron populations 1.22144 0.92808 1.03594 1.03369 1.20613 0.94186 0.95694 0.79727 0.88295 1.22709 1.05128 1.00058 0.91057 1.22975 0.98395 1.03176 0.96221 1.23032 0.92496 1.02133 1.03210 1.48298 1.20146 1.24396 1.22772 1.21687 1.01579 0.94760 0.96879 1.17870 0.98924 0.95992 0.95234 1.42950 1.29258 1.30524 1.27279 1.18624 0.80970 0.84025 0.79346 1.90510 1.29805 1.49806 1.74266 1.18761 1.03420 1.03337 1.03289 1.20460 0.94752 0.95418 0.97548 1.20952 1.02508 1.00389 0.95802 1.17807 0.89970 0.89576 0.90095 1.19882 0.93639 1.13296 1.19944 0.89595 1.26115 0.95703 0.98856 0.94102 1.69742 1.00364 1.35531 1.33643 0.86186 0.79058 0.81259 0.79729 1.18972 1.19968 1.18191 1.20722 1.02849 0.99769 1.02411 1.20363 0.95971 0.95360 0.92122 1.24580 0.99462 0.92391 0.97353 1.77310 1.02626 1.23893 1.07265 0.91337 0.90174 0.91358 0.87267 0.88421 0.88441 0.88422 0.88635 0.81286 0.75767 0.89333 0.86236 0.90178 0.88276 0.87905 0.77738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 8.68 37.15 0.32 -0.79 16 2 C 0.20 1.87 3.55 -67.93 -0.24 1.63 16 3 H 0.10 0.92 7.90 -51.93 -0.41 0.51 16 4 C -0.17 -1.44 5.45 -90.62 -0.49 -1.94 16 5 C -0.17 -1.05 9.73 -26.73 -0.26 -1.31 16 6 C -0.17 -1.34 10.18 -26.73 -0.27 -1.61 16 7 N -0.37 -4.88 3.55 -54.52 -0.19 -5.08 16 8 C 0.00 -0.04 10.66 -16.66 -0.18 -0.21 16 9 C 0.02 0.41 6.90 -83.91 -0.58 -0.17 16 10 N -0.66 -11.32 5.42 -10.96 -0.06 -11.38 16 11 C 0.57 12.02 7.73 -12.44 -0.10 11.92 16 12 O -0.56 -12.81 13.47 5.26 0.07 -12.74 16 13 C -0.28 -6.30 5.89 -104.73 -0.62 -6.92 16 14 C -0.06 -1.34 9.47 -39.61 -0.38 -1.72 16 15 C -0.18 -4.23 8.63 -39.27 -0.34 -4.57 16 16 C 0.13 3.21 5.57 -106.80 -0.59 2.62 16 17 C -0.44 -10.72 9.04 -37.75 -0.34 -11.06 16 18 H 0.09 2.00 7.91 -52.48 -0.42 1.59 16 19 C 0.07 1.69 5.13 -17.31 -0.09 1.60 16 20 N -0.77 -18.06 10.99 55.56 0.61 -17.44 16 21 Si 0.91 16.93 29.60 -169.99 -5.03 11.90 16 22 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 24 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 25 C -0.24 -5.64 9.73 -39.27 -0.38 -6.02 16 26 C -0.02 -0.44 9.52 -39.61 -0.38 -0.81 16 27 C 0.05 0.88 10.84 -17.22 -0.19 0.70 16 28 N -0.29 -4.76 12.56 30.71 0.39 -4.38 16 29 H 0.07 0.45 7.17 -51.92 -0.37 0.08 16 30 H 0.08 0.39 7.29 -51.93 -0.38 0.01 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.48 7.61 -51.93 -0.40 0.09 16 35 H 0.10 0.74 8.05 -51.93 -0.42 0.33 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.17 1.65 7.29 -52.48 -0.38 1.27 16 38 H 0.41 6.00 6.83 -40.82 -0.28 5.73 16 39 H 0.09 1.58 6.37 -52.49 -0.33 1.25 16 40 H 0.12 2.88 6.19 -52.49 -0.33 2.56 16 41 H 0.29 6.04 8.29 -40.82 -0.34 5.70 16 42 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.10 2.27 7.63 -52.48 -0.40 1.87 16 44 H 0.21 3.92 5.91 -52.49 -0.31 3.61 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -28.71 368.69 -9.43 -38.14 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -5.67 Total: 14.08 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -5.10 Total: -18.66 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.74 Total: -38.28 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.71 -9.43 -38.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491066189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.232 kcal (2) G-P(sol) polarization free energy of solvation -28.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds